메뉴 건너뛰기




Volumn 87, Issue 1, 2006, Pages 103-113

Structural and functional characterization of the coxsackievirus B3 CRE(2C): Role of CRE(2C) in negative- and positive-strand RNA synthesis

Author keywords

[No Author keywords available]

Indexed keywords

CELL EXTRACT; CIS ACTING REPLICATION ELEMENT; MUTANT PROTEIN; UNCLASSIFIED DRUG; VIRUS PROTEIN; VIRUS RNA;

EID: 30344476712     PISSN: 00221317     EISSN: None     Source Type: Journal    
DOI: 10.1099/vir.0.81297-0     Document Type: Article
Times cited : (73)

References (43)
  • 1
    • 0025049209 scopus 로고
    • A functional ribonucleoprotein complex forms around the 5′ end of poliovirus RNA
    • Andino, R., Rieckhof, G. E. & Baltimore, D. (1990). A functional ribonucleoprotein complex forms around the 5′ end of poliovirus RNA. Cell 63, 369-380.
    • (1990) Cell , vol.63 , pp. 369-380
    • Andino, R.1    Rieckhof, G.E.2    Baltimore, D.3
  • 2
    • 0029155434 scopus 로고
    • Complete replication of poliovirus in vitro: Preinitiation RNA replication complexes require soluble cellular factors for the synthesis of VPg-linked RNA
    • Barton, D. J., Black, E. P. & Flanegan, J. B. (1995). Complete replication of poliovirus in vitro: preinitiation RNA replication complexes require soluble cellular factors for the synthesis of VPg-linked RNA. J Virol 69, 5516-5527.
    • (1995) J Virol , vol.69 , pp. 5516-5527
    • Barton, D.J.1    Black, E.P.2    Flanegan, J.B.3
  • 3
    • 0035868852 scopus 로고    scopus 로고
    • 5′ cloverleaf in poliovirus RNA is a cis-acting replication element required for negative-strand synthesis
    • Barton, D. J., O'Donnell, B. J. & Flanegan, J. B. (2001). 5′ cloverleaf in poliovirus RNA is a cis-acting replication element required for negative-strand synthesis. EMBO J 20, 1439-1448.
    • (2001) EMBO J , vol.20 , pp. 1439-1448
    • Barton, D.J.1    O'Donnell, B.J.2    Flanegan, J.B.3
  • 4
    • 22844440540 scopus 로고    scopus 로고
    • Trans-dominant inhibition of RNA viral replication can slow growth of drug-resistant viruses
    • Crowder, S. & Kirkegaard, K. (2005). Trans-dominant inhibition of RNA viral replication can slow growth of drug-resistant viruses. Nat Genet 37, 701-709.
    • (2005) Nat Genet , vol.37 , pp. 701-709
    • Crowder, S.1    Kirkegaard, K.2
  • 5
    • 0032146721 scopus 로고    scopus 로고
    • Switch from translation to RNA replication in a positive-stranded RNA virus
    • Gamarnik, A. V. & Andino, R. (1998). Switch from translation to RNA replication in a positive-stranded RNA virus. Genes Dev 12, 2293-2304.
    • (1998) Genes Dev , vol.12 , pp. 2293-2304
    • Gamarnik, A.V.1    Andino, R.2
  • 9
    • 0037276580 scopus 로고    scopus 로고
    • Structure and function analysis of the poliovirus cis-acting replication element (CRE)
    • Goodfellow, I. G., Kerrigan, D. & Evans, D. J. (2003a). Structure and function analysis of the poliovirus cis-acting replication element (CRE). RNA 9, 124-137.
    • (2003) RNA , vol.9 , pp. 124-137
    • Goodfellow, I.G.1    Kerrigan, D.2    Evans, D.J.3
  • 10
    • 0041351978 scopus 로고    scopus 로고
    • The poliovirus 2C cis-acting replication element-mediated uridylylation of VPg is not required for synthesis of negative-sense genomes
    • Goodfellow, I. G., Polacek, C., Andino, R. & Evans, D. J. (2003b). The poliovirus 2C cis-acting replication element-mediated uridylylation of VPg is not required for synthesis of negative-sense genomes. J Gen Virol 84, 2359-2363.
    • (2003) J Gen Virol , vol.84 , pp. 2359-2363
    • Goodfellow, I.G.1    Polacek, C.2    Andino, R.3    Evans, D.J.4
  • 11
    • 0033919960 scopus 로고    scopus 로고
    • Poliovirus requires a precise 5′ end for efficient positive-strand RNA synthesis
    • Herold, J. & Andino, R. (2000). Poliovirus requires a precise 5′ end for efficient positive-strand RNA synthesis. J Virol 74, 6394-6400.
    • (2000) J Virol , vol.74 , pp. 6394-6400
    • Herold, J.1    Andino, R.2
  • 12
    • 0035265836 scopus 로고    scopus 로고
    • Poliovirus RNA replication requires genome circularization through a protein-protein bridge
    • Herold, J. & Andino, R. (2001). Poliovirus RNA replication requires genome circularization through a protein-protein bridge. Mol Cell 7, 581-591.
    • (2001) Mol Cell , vol.7 , pp. 581-591
    • Herold, J.1    Andino, R.2
  • 13
    • 0025212682 scopus 로고
    • Complete nucleotide sequence of infectious coxsackievirus B3 cDNA: Two initial 5′ uridine residues are regained during plus-strand RNA synthesis
    • Klump, W. M., Bergmann, I., Müller, B. C., Ameis, D. & Kandolf, R. (1990). Complete nucleotide sequence of infectious coxsackievirus B3 cDNA: two initial 5′ uridine residues are regained during plus-strand RNA synthesis. J Virol 64, 1573-1583.
    • (1990) J Virol , vol.64 , pp. 1573-1583
    • Klump, W.M.1    Bergmann, I.2    Müller, B.C.3    Ameis, D.4    Kandolf, R.5
  • 14
    • 0033613152 scopus 로고    scopus 로고
    • A coding RNA sequence acts as a replication signal in cardioviruses
    • Lobert, P.-E., Escriou, N., Ruelle, J. & Michiels, T. (1999). A coding RNA sequence acts as a replication signal in cardioviruses. Proc Natl Acad Sci U S A 96, 11560-11565.
    • (1999) Proc Natl Acad Sci U S A , vol.96 , pp. 11560-11565
    • Lobert, P.-E.1    Escriou, N.2    Ruelle, J.3    Michiels, T.4
  • 15
    • 0034740269 scopus 로고    scopus 로고
    • Poliovirus 5′-terminal cloverleaf RNA is required in cis for VPg uridylylation and the initiation of negative-strand RNA synthesis
    • Lyons, T., Murray, K. E., Roberts, A. W. & Barton, D. J. (2001). Poliovirus 5′-terminal cloverleaf RNA is required in cis for VPg uridylylation and the initiation of negative-strand RNA synthesis. J Virol 75, 10696-10708.
    • (2001) J Virol , vol.75 , pp. 10696-10708
    • Lyons, T.1    Murray, K.E.2    Roberts, A.W.3    Barton, D.J.4
  • 16
    • 0036776467 scopus 로고    scopus 로고
    • Identification and characterization of a cis-acting replication element (cre) adjacent to the internal ribosome entry site of foot-and-mouth disease virus
    • Mason, P. W., Bezborodova, S. V. & Henry, T. M. (2002). Identification and characterization of a cis-acting replication element (cre) adjacent to the internal ribosome entry site of foot-and-mouth disease virus. J Virol 76, 9686-9694.
    • (2002) J Virol , vol.76 , pp. 9686-9694
    • Mason, P.W.1    Bezborodova, S.V.2    Henry, T.M.3
  • 17
    • 0031762554 scopus 로고    scopus 로고
    • The rhinovirus type 14 genome contains an internally located RNA structure that is required for viral replication
    • McKnight, K. L. & Lemon, S. M. (1998). The rhinovirus type 14 genome contains an internally located RNA structure that is required for viral replication. RNA 4, 1569-1584.
    • (1998) RNA , vol.4 , pp. 1569-1584
    • McKnight, K.L.1    Lemon, S.M.2
  • 18
    • 0031060472 scopus 로고    scopus 로고
    • Kissing of the two predominant hairpin loops in the coxsackie B virus 3′ untranslated region is the essential structural feature of the origin of replication required for negative-strand RNA synthesis
    • Melchers, W. J. G., Hoenderop, J. G. J., Bruins Slot, H. J., Pleij, C. W. A., Pilipenko, E. V., Agol, V. I. & Galama, J. M. D. (1997). Kissing of the two predominant hairpin loops in the coxsackie B virus 3′ untranslated region is the essential structural feature of the origin of replication required for negative-strand RNA synthesis. J Virol 71, 686-696.
    • (1997) J Virol , vol.71 , pp. 686-696
    • Melchers, W.J.G.1    Hoenderop, J.G.J.2    Bruins Slot, H.J.3    Pleij, C.W.A.4    Pilipenko, E.V.5    Agol, V.I.6    Galama, J.M.D.7
  • 19
    • 0033942925 scopus 로고    scopus 로고
    • Cross-talk between orientation-dependent recognition determinants of a complex control RNA element, the enterovirus oriR
    • Melchers, W. J. G., Bakkers, J. M. J. E., Bruins Slot, H. J., Galama, J. M. D., Agol, V. I. & Pilipenko, E. V. (2000). Cross-talk between orientation-dependent recognition determinants of a complex control RNA element, the enterovirus oriR. RNA 6, 976-987.
    • (2000) RNA , vol.6 , pp. 976-987
    • Melchers, W.J.G.1    Bakkers, J.M.J.E.2    Bruins Slot, H.J.3    Galama, J.M.D.4    Agol, V.I.5    Pilipenko, E.V.6
  • 21
    • 0031054247 scopus 로고    scopus 로고
    • An RNA tertiary structure in the 3′ untranslated region of enteroviruses is necessary for efficient replication
    • Mirmomeni, M. H., Hughes, P. J. & Stanway, G. (1997). An RNA tertiary structure in the 3′ untranslated region of enteroviruses is necessary for efficient replication. J Virol 71, 2363-2370.
    • (1997) J Virol , vol.71 , pp. 2363-2370
    • Mirmomeni, M.H.1    Hughes, P.J.2    Stanway, G.3
  • 22
    • 0026325508 scopus 로고
    • Cell-free, de novo synthesis of poliovirus
    • Molla, A., Paul, A. V. & Wimmer, E. (1991). Cell-free, de novo synthesis of poliovirus. Science 254, 1647-1651.
    • (1991) Science , vol.254 , pp. 1647-1651
    • Molla, A.1    Paul, A.V.2    Wimmer, E.3
  • 23
    • 0037405928 scopus 로고    scopus 로고
    • Poliovirus cre(2C)-dependent synthesis of VPgpUpU is required for positive- but not negative-strand RNA synthesis
    • Morasco, B. J., Sharma, N., Parilla, J. & Flanegan, J. B. (2003). Poliovirus cre(2C)-dependent synthesis of VPgpUpU is required for positive- but not negative-strand RNA synthesis. J Virol 77, 5136-5144.
    • (2003) J Virol , vol.77 , pp. 5136-5144
    • Morasco, B.J.1    Sharma, N.2    Parilla, J.3    Flanegan, J.B.4
  • 24
    • 0037383425 scopus 로고    scopus 로고
    • Poliovirus CRE-dependent VPg uridylylation is required for positive-strand RNA synthesis but not for negative-strand RNA synthesis
    • Murray, K. E. & Barton, D. J. (2003). Poliovirus CRE-dependent VPg uridylylation is required for positive-strand RNA synthesis but not for negative-strand RNA synthesis. J Virol 77, 4739-4750.
    • (2003) J Virol , vol.77 , pp. 4739-4750
    • Murray, K.E.1    Barton, D.J.2
  • 26
    • 0017755777 scopus 로고
    • The location of the polio genome protein in viral RNAs and its implication for RNA synthesis
    • Nomoto, A., Detjen, B., Pozzatti, R. & Wimmer, E. (1977a). The location of the polio genome protein in viral RNAs and its implication for RNA synthesis. Nature 268, 208-213.
    • (1977) Nature , vol.268 , pp. 208-213
    • Nomoto, A.1    Detjen, B.2    Pozzatti, R.3    Wimmer, E.4
  • 27
    • 0017681842 scopus 로고
    • The 5′-terminal structures of poliovirion RNA and poliovirus mRNA differ only in the genome-linked protein VPg
    • Nomoto, A., Kitamura, N., Golini, F. & Wimmer, E. (1977b). The 5′-terminal structures of poliovirion RNA and poliovirus mRNA differ only in the genome-linked protein VPg. Proc Natl Acad Sci U S A 74, 5345-5349.
    • (1977) Proc Natl Acad Sci U S A , vol.74 , pp. 5345-5349
    • Nomoto, A.1    Kitamura, N.2    Golini, F.3    Wimmer, E.4
  • 28
    • 0032554886 scopus 로고    scopus 로고
    • Protein-primed RNA synthesis by purified poliovirus RNA polymerase
    • Paul, A. V., van Boom, J. H., Filippov, D. & Wimmer, E. (1998). Protein-primed RNA synthesis by purified poliovirus RNA polymerase. Nature 393, 280-284.
    • (1998) Nature , vol.393 , pp. 280-284
    • Paul, A.V.1    van Boom, J.H.2    Filippov, D.3    Wimmer, E.4
  • 29
    • 0033766003 scopus 로고    scopus 로고
    • Identification of an RNA hairpin in poliovirus RNA that serves as the primary template in the in vitro uridylylation of VPg
    • Paul, A. V., Rieder, E., Kim, D. W., van Boom, J. H. & Wimmer, E. (2000). Identification of an RNA hairpin in poliovirus RNA that serves as the primary template in the in vitro uridylylation of VPg. J Virol 74, 10359-10370.
    • (2000) J Virol , vol.74 , pp. 10359-10370
    • Paul, A.V.1    Rieder, E.2    Kim, D.W.3    van Boom, J.H.4    Wimmer, E.5
  • 30
    • 0242415195 scopus 로고    scopus 로고
    • A "slide-back" mechanism for the initiation of protein-primed RNA synthesis by the RNA polymerase of poliovirus
    • Paul, A. V., Yin, J., Mugavero, J., Rieder, E., Liu, Y. & Wimmer, E. (2003). A "slide-back" mechanism for the initiation of protein-primed RNA synthesis by the RNA polymerase of poliovirus. J Biol Chem 278, 43951-43960.
    • (2003) J Biol Chem , vol.278 , pp. 43951-43960
    • Paul, A.V.1    Yin, J.2    Mugavero, J.3    Rieder, E.4    Liu, Y.5    Wimmer, E.6
  • 31
    • 0018148709 scopus 로고
    • Identification of a protein linked to nascent poliovirus RNA and to the polyuridylic acid of negative-strand RNA
    • Pettersson, R. F., Ambros, V. & Baltimore, D. (1978). Identification of a protein linked to nascent poliovirus RNA and to the polyuridylic acid of negative-strand RNA. J Virol 27, 357-365.
    • (1978) J Virol , vol.27 , pp. 357-365
    • Pettersson, R.F.1    Ambros, V.2    Baltimore, D.3
  • 32
    • 0029838843 scopus 로고    scopus 로고
    • Cis-element, oriR, involved in the initiation of (-) strand poliovirus RNA: A quasi-globular multi-domain RNA structure maintained by tertiary ('kissing') interactions
    • Pilipenko, E. V., Poperechny, K. V., Maslova, S. V., Melchers, W. J. G., Bruins Slot, H. J. & Agol, V. I. (1996). Cis-element, oriR, involved in the initiation of (-) strand poliovirus RNA: a quasi-globular multi-domain RNA structure maintained by tertiary ('kissing') interactions. EMBO J 15, 5428-5436.
    • (1996) EMBO J , vol.15 , pp. 5428-5436
    • Pilipenko, E.V.1    Poperechny, K.V.2    Maslova, S.V.3    Melchers, W.J.G.4    Bruins Slot, H.J.5    Agol, V.I.6
  • 33
    • 33745158157 scopus 로고
    • A simple method of estimating fifty percent endpoints
    • Reed, L. J. & Muench, H. (1938). A simple method of estimating fifty percent endpoints. Am J Hyg 27, 493-497.
    • (1938) Am J Hyg , vol.27 , pp. 493-497
    • Reed, L.J.1    Muench, H.2
  • 34
    • 0033755326 scopus 로고    scopus 로고
    • Genetic and biochemical studies of poliovirus cis-acting replication element cre in relation to VPg uridylylation
    • Rieder, E., Paul, A. V., Kim, D. W., van Boom, J. H. & Wimmer, E. (2000). Genetic and biochemical studies of poliovirus cis-acting replication element cre in relation to VPg uridylylation. J Virol 74, 10371-10380.
    • (2000) J Virol , vol.74 , pp. 10371-10380
    • Rieder, E.1    Paul, A.V.2    Kim, D.W.3    van Boom, J.H.4    Wimmer, E.5
  • 36
    • 0028871749 scopus 로고
    • Genetic analysis of a hydrophobic domain of coxsackie B3 virus protein 2B: A moderate degree of hydrophobicity is required for a cis-acting function in viral RNA synthesis
    • van Kuppeveld, F. J. M., Galama, J. M. D., Zoll, J. & Melchers, W. J. G. (1995). Genetic analysis of a hydrophobic domain of coxsackie B3 virus protein 2B: a moderate degree of hydrophobicity is required for a cis-acting function in viral RNA synthesis. J Virol 69, 7782-7790.
    • (1995) J Virol , vol.69 , pp. 7782-7790
    • van Kuppeveld, F.J.M.1    Galama, J.M.D.2    Zoll, J.3    Melchers, W.J.G.4
  • 37
  • 40
    • 0035945235 scopus 로고    scopus 로고
    • Conserved RNA secondary structures in Picornaviridae genomes
    • Witwer, C., Rauscher, S., Hofacker, I. L. & Stadler, P. F. (2001). Conserved RNA secondary structures in Picornaviridae genomes. Nucleic Acids Res 29, 5079-5089.
    • (2001) Nucleic Acids Res , vol.29 , pp. 5079-5089
    • Witwer, C.1    Rauscher, S.2    Hofacker, I.L.3    Stadler, P.F.4
  • 41
    • 0036314310 scopus 로고    scopus 로고
    • Sequence requirements for viral RNA replication and VPg uridylylation directed by the internal cis-acting replication element (cre) of human rhinovirus type 14
    • Yang, Y., Rijnbrand, R., McKnight, K. L., Wimmer, E., Paul, A., Martin, A. & Lemon, S. M. (2002). Sequence requirements for viral RNA replication and VPg uridylylation directed by the internal cis-acting replication element (cre) of human rhinovirus type 14. J Virol 76, 7485-7494.
    • (2002) J Virol , vol.76 , pp. 7485-7494
    • Yang, Y.1    Rijnbrand, R.2    McKnight, K.L.3    Wimmer, E.4    Paul, A.5    Martin, A.6    Lemon, S.M.7
  • 42
    • 0037405787 scopus 로고    scopus 로고
    • Functional dissection of a poliovirus cis-acting replication element [PV-cre(2C)]: Analysis of single- and dual-cre viral genomes and proteins that bind specifically to PV-cre RNA
    • Yin, J., Paul, A. V., Wimmer, E. & Rieder, E. (2003). Functional dissection of a poliovirus cis-acting replication element [PV-cre(2C)]: analysis of single- and dual-cre viral genomes and proteins that bind specifically to PV-cre RNA. J Virol 77, 5152-5166.
    • (2003) J Virol , vol.77 , pp. 5152-5166
    • Yin, J.1    Paul, A.V.2    Wimmer, E.3    Rieder, E.4
  • 43
    • 0002287019 scopus 로고    scopus 로고
    • Algorithms and thermodynamics for RNA secondary structure prediction: A practical guide
    • Edited by J. Barciszewski & B. F. C. Clark. Dordrecht: Kluwer
    • Zuker, M., Mathews, D. H. & Turner, D. H. (1999). Algorithms and thermodynamics for RNA secondary structure prediction: a practical guide. In RNA Biochemistry and Biotechnology, pp. 11-43. Edited by J. Barciszewski & B. F. C. Clark. Dordrecht: Kluwer.
    • (1999) RNA Biochemistry and Biotechnology , pp. 11-43
    • Zuker, M.1    Mathews, D.H.2    Turner, D.H.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.