High-resolution structure of a picornaviral internal cis-acting RNA replication element (cre)

Proceedings of the National Academy of Sciences of the United States of America

Volumn 101, Issue 34, 2004, Pages 12688-12693

  Thiviyanathan, Varatharasa ^a   Yang, Yan ^a   Kaluarachchi, Kumaralal ^b   Rijnbrand, Rene ^a   Gorenstein, David G ^a   Lemon, Stanley M ^a  

^a University of Texas Medical Branch School of Medicine   (United States)

^b UNIVERSITY OF TEXAS MD ANDERSON CANCER CENTER   (United States)

Author keywords

Stem loop; Uridylylation

Indexed keywords

CIS ACTING ELEMENT; NUCLEOTIDE; PRIMER RNA; RNA POLYMERASE; VIRUS RNA;

ARTICLE; BASE PAIRING; CATALYSIS; ENTEROVIRUS; HUMAN RHINOVIRUS; IN VITRO STUDY; MOLECULAR INTERACTION; NONHUMAN; PICORNAVIRUS; PRIORITY JOURNAL; PROTEIN CONFORMATION; PROTEIN STRUCTURE; RNA REPLICATION; RNA SYNTHESIS; VIRUS REPLICATION;

BASE PAIRING; BASE SEQUENCE; HUMANS; MAGNESIUM; MODELS, MOLECULAR; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; NUCLEIC ACID CONFORMATION; REGULATORY SEQUENCES, NUCLEIC ACID; RHINOVIRUS; RNA; VIRUS REPLICATION;

ENTEROVIRUS; HUMAN RHINOVIRUS 14; HUMAN RHINOVIRUS SP.; PICORNAVIRIDAE; RHINOVIRUS; RNA VIRUSES;

EID: 4344672705     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0403079101     Document Type: Article

References (26)

1. McKnight, K. L. & Lemon, S. M. (1996) J. Virol. 70, 1941-1952.
2. McKnight, K. L. & Lemon, S. M. (1998) RNA 4, 1569-1584.
3. Lobert, P. E., Escriou, N., Ruelle, J. & Michiels, T. (1999) Proc. Natl. Acad. Sci. USA 96, 11560-11565.
4. Goodfellow, I., Chaudhry, Y., Richardson, A., Meredith, J., Almond, J. W., Barclay, W. & Evans, D. J. (2000) J. Virol. 74, 4590-4600.
5. Gerber, K., Wimmer, E. & Paul, A. V. (2001) J. Virol. 75, 10979-10990.
6. Mason, P. W., Bezborodova, S. V. & Henry, T. M. (2002) J. Virol. 76, 9686-9694.
7. Paul, A. V., Rieder, E., Kim, D. W., van Boom, J. H. & Wimmer, E. (2000) J. Virol. 74, 10359-10370.
8. Flanegan, J. B., Petterson, R. F., Ambros, V., Hewlett, N. J. & Baltimore, D. (1977) Proc. Natl. Acad. Sci. USA 74, 961-965.
9. Lee, Y. F., Nomoto, A., Detjen, B. M. & Wimmer, E. (1977) Proc. Natl. Acad. Sci. USA 74, 59-63.
10. Paul, A. V., Yin, J., Mugavero, J., Rieder, E., Liu, Y. & Wimmer, E. (2003) J. Biol. Chem, 278, 43951-43960.
11. Paul, A. V., van Boom, J. H., Filippov, D. & Wimmer, E. (1998) Nature 393, 280-284.
12. Yang, Y., Rijnbrand, R., McKnight, K. L., Wimmer, E., Paul, A., Martin, A. & Lemon, S. M. (2002) J. Virol. 76, 7485-7494.
13. Yang, Y., Rijnbrand, R., Watowich, S. & Lemon, S. M. (2004) J. Biol. Chem. 279, 12659-12667.
14. Yin, J., Paul, A. V., Wimmer, E. & Rieder, E. (2003) J. Virol. 77, 5152-5166.
15. Lukavsky, P. J. & Puglisi, J. D. (2001) Methods 25, 316-332,
16. Brünger, A. T. (1993) X-PLOR: A System for X-Ray Crystallography and NMR (Yale Univ., New Haven, CT), Version 3.1.
17. Zuker, M. (2003) Nucleic Acids Res. 31, 3406-3415.
18. Rieder, E., Paul, A. V., Kim, D. W., van Boom, J. H. & Wimmer, E. (2000) J. Virol. 74, 10371-10380.
19. Gorenstein, D. G. (1994) Chem. Rev. 94, 1315-1338.
20. Pyle, A. M. (2002) J. Biol. Inorg. Chem. 7, 679-690.
21. Paul, A. V., Peters, J., Mugavero, J., Yin, J., van Boom, J. H. & Wimmer, E. (2003) J. Virol. 77, 891-904.
22. Goodfellow, I. G., Kerrigan, D. & Evans, D. J. (2003) RNA 9, 124-137.
23. Serra, M. J., Axenson, T. J. & Turner, D. H. (1994) Biochemistry 33, 14289-14296.
24. Fountain, M. A., Serra, M. J., Krugh, T. R. & Turner, D. H. (1996) Biochemistry 35, 6539-6548.
25. Pathak, H. B., Ghosh, S. K., Roberts, A. W., Sharma, S. D., Yoder, J. D., Arnold, J. J., Gohara, D. W., Barton, D. J., Paul, A. V. & Cameron, C. E. (2002) J. Biol. Chem. 277, 31551-31562.
26. Weeks, K. M. & Crothers, D. M. (1993) Science 261, 1574-1577.