Direct prediction of HP sequences of compact polymer chains from elastic force

Polymer

Volumn 47, Issue 2, 2006, Pages 735-741

  Zhang, Linxi ^a   Su, Jiaye ^b  

^a WENZHOU UNIVERSITY   (China)

^b ZHEJIANG UNIVERSITY   (China)

Author keywords

HP sequence; Nanopore; PERM

Indexed keywords

DNA; ELASTIC MODULI; FREE ENERGY; PARAMETER ESTIMATION; PROTEINS; SPECTROSCOPIC ANALYSIS; THERMODYNAMIC PROPERTIES;

HP SEQUENCE; NANOPORE; PERM (PRUNED-ENRICHED-ROSENBLUTH METHOD) SIMULATION; SINGLE-MOLECULE FORCE SPECTROSCOPY (SMFS);

ORGANIC POLYMERS;

POLYMER SCIENCE;

EID: 30144435957     PISSN: 00323861     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.polymer.2005.11.081     Document Type: Article

References (44)

1. U. Gerland, R. Bundschuh, and T. Hwa Phys Biol 1 2004 19
2. Y. Kantor, and M. Kardar Phys Rev E 69 2004 021806
3. P. Tian, and G.D. Smith J Chem Phys 119 2003 11475
4. W. Sung, and P.J. Park Phys Rev Lett 77 1996 4
5. J. Chuang, Y. Kantor, and M. Kardar Phys Rev E 65 2001 011802
6. M. Muthukumar J Chem Phys 111 1999 10371
7. S.E. Henrickson, M. Misakian, B. Robertson, and J. Kasianowicz Phys Rev Lett 85 2000 3057
8. A. Meller, L. Nivon, and D. Branton Phys Rev Lett 86 2001 3435
9. W. Vercoutere, S. Winters-Hilt, H. Olsen, D. Deamer, D. Haussler, and M. Akeson Nat Biotechnol 19 2001 248
10. A.F. Sauer-Budge, J.A. Nyamwanda, D.K. Lubensky, and D. Branton Phys Rev Lett 90 2003 238101
11. B. Drieselkelmann Microbiol Rev 58 1994 293
12. G. Schatz, and B. Dobberstein Science 271 1996 1519
13. S.M. Simon, and G. Blobel Cell 65 1991 371
14. D.C. Chang Guide to electroporation and electrofusion 1992 Academic Press New York
15. J. Kasianowicz, E. Brandin, D. Branton, and D. Deamer Proc Natl Acad Sci USA 93 1996 13770
16. M. Akeson, D. Branton, J. Kasianowicz, E. Brandin, and D. Deamer Biophys J 77 1999 3227
17. A. Meller, L. Nivon, E. Brandin, J. Golovchenko, and D. Branton Proc Natl Acad Sci USA 97 2000 1079
18. T. Hugel, and M. Seitz Macromol Rapid Commnu 22 2001 989
19. H.G. Hansma, and J.H. Hoh Annu Rev Biophys Biomol Struct 23 1994 115
20. K.A. Dill Biochemistry 24 1985 1501
21. K.F. Lau, and K.A. Dill Macromolecules 22 1989 3986
22. G. Giugliarelli, C. Micheletti, R. Banavar, and A. Maritan J Chem Phys 113 2000 5072
23. H.S. Chan, and K.A. Dill Macromolecules 22 1989 4559
24. D. Leckband Curr Opin Struct Biol 14 2004 524
25. P. Grassberger Phys Rev E 56 1997 3682
26. T.T. Sun, L.X. Zhang, J. Chen, and Y. Shen J Chem Phys 120 2004 5469
27. L.X. Zhang, and T.T. Sun Polymer 45 2004 3547
28. L.X. Zhang, A.G. Xia, Z.T. Jiang, and D.L. Zhao Macromol Theory Simul 10 2001 651
29. L.X. Zhang, Z.T. Jiang, and D.L. Zhao J Polym Sci, Part B Polym Phys 40 2002 105
30. J.G. Curro, and J.E. Mark J Chem Phys 80 1984 4521
31. J.E. Mark J Phys Chem B 107 2003 903
32. J. Chen, L.X. Zhang, and J. Cheng J Chem Phys 121 2004 11481
33. T.T. Sun, and L.X. Zhang Polymer 46 2005 5714
34. K. Solc, and W.H. Stockmayer J Chem Phys 54 1971 2756
35. K. Solc J Chem Phys 55 1971 335
36. G. Zifferer, and W. Preusser Macromol Theory Simul 10 2001 397
37. O. Jagodzinski, E. Eisenriegler, and K. Kremer J Phys I 2 1992 2243
38. M.O. Steinhauser J Chem Phys 122 2005 094901
39. K.M. Fiebig, and K.A. Dill J Chem Phys 98 1993 3475
40. A. Kloczkowski, and R.L Jernigan J Chem Phys 109 1998 5134
41. K.F. Lau, and K.A. Dill Proc Natl Acad Sci USA 87 1990 6388
42. K. Yue, and K.A. Dill Proc Natl Acad Sci USA 89 1992 4163
43. T. Bogner, A. Degenhard, and F. Schmid Phys Rev Lett 93 2004 268108
44. K.A. Dill Biochemistry 29 1990 7134