The murine orthologue of human antichymotrypsin: A structural paradigm for clade A3 serpins

Journal of Biological Chemistry

Volumn 280, Issue 52, 2005, Pages 43168-43178

  Horvath, Anita J ^a   Irving, James A ^b   Rossjohn, Jamie ^b   Law, Ruby H ^b   Bottomley, Stephen P ^b   Quinsey, Noelene S ^b   Pike, Robert N ^b   Coughlin, Paul B ^a   Whisstock, James C ^b  

^a MONASH UNIVERSITY   (Australia)

^b MONASH UNIVERSITY   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

BIOCHEMISTRY; BIOLOGICAL MEMBRANES; STABILIZATION;

BIOLOGICAL SIGNIFICANCE; ENCEPHALOPATHY; INFLAMMATORY RESPONSE;

PROTEINS;

CATHEPSIN G; CHYMOTRYPSIN INHIBITOR; SERINE PROTEINASE INHIBITOR; TRYPSIN INHIBITOR;

ANIMAL TISSUE; ARTICLE; BETA SHEET; BRAIN DISEASE; CHEMICAL ANALYSIS; CLADISTICS; MOUSE; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN FAMILY; PROTEIN MOTIF; PROTEIN SECONDARY STRUCTURE; PROTEIN STABILITY; PROTEIN STRUCTURE; SEQUENCE ANALYSIS; STRUCTURE ANALYSIS;

ANIMALIA; MURINAE;

EID: 30044444914     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M505598200     Document Type: Article

References (69)

1. Dickson, I., and Alper, C. A. (1974) Clin. Chim. Acta 54, 381-385
2. Chandra, T., Stackhouse, R., Kidd, V. J., Robson, K. J., and Woo, S. L. (1983) Biochemistry 22, 5055-5061
3. Cichy, J., Potempa, J., Chawla, R. K., and Travis, J. (1995) J. Clin. Invest. 95, 2729-2733
4. Hwang, S. R., Steineckert, B., Kohn, A., Palkovits, M., and Hook, V. Y. (1999) J. Biol. Chem. 274, 1821-1827
5. Travis, J., Bowen, J., and Baugh, R. (1978) Biochemistry 17, 5651-5656
6. Schechter, N. M., Jordan, L. M., James, A. M., Cooperman, B. S., Wang, Z. M., and Rubin, H. (1993) J. Biol. Chem. 268, 23626-23633
7. Abraham, C. R., Selkoe, D. J., and Potter, H. (1988) Cell 52, 487-501
8. Kamboh, M. I., Sanghera, D. K., Ferrell, R. E., and DeKosky, S. T. (1995) Nat. Genet. 10, 486-488
9. Yamada, M., Sodeyama, N., Itoh, Y., Suematsu, N., Otomo, E., Matsushita, M., and Mizusawa, H. (1998) Ann. Neurol. 44, 129-131
10. Abraham, C. R. (2001) Neurobiol. Aging 22, 931-936
11. Irving, J. A., Pike, R. N., Lesk, A. M., and Whisstock, J. C. (2000) Genome Res. 10, 1845-1864
12. Irving, J. A., Steenbakkers, P. J. M., Lesk, A. M., Op den Camp, H. J. M., Pike, R. N., and Whisstock, J. C. W. (2002) Mol. Biol. Evol. 19, 1881-1890
13. Silverman, G. A., Bird, P. I., Carrell, R. W., Church, F. C., Coughlin, P. B., Gettins, P. G., Irving, J. A., Lomas, D. A., Luke, C. J., Moyer, R. W., Pemberton, P. A., Remold-O'Donnell, E., Salvesen, G. S., Travis, J., and Whisstock, J. C. (2001) J. Biol. Chem. 276, 33293-33296
14. Whisstock, J., Skinner, R., and Lesk, A. M. (1998) Trends Biochem. Sci. 23, 63-67
15. Huntington, J. A., Read, R. J., and Carrell, R. W. (2000) Nature 407, 923-926
16. Dunstone, M. A., Dai, W., Whisstock, J. C., Rossjohn, J., Pike, R. N., Feil, S. C., Le Bonniec, B. F., Parker, M. W., and Bottomley, S. P. (2000) Protein Sci. 9, 417-420
17. Chang, W. S., Whisstock, J. C., Hopkins, P. C., Lesk, A. M., Carrell, R. W., and Wardell, M. R. (1997) Protein Sci. 6, 89-98
18. Faber, J. P., Poller, W., Olek, K., Baumann, U., Carlson, J., Lindmark, B., and Eriksson, S. (1993) J. Hepatol. 18, 313-321
19. Poller, W., Faber, J. P., Weidinger, S., Tief, K., Scholz, S., Fischer, M., Olek, K., Kirchgesser, M., and Heidtmann, H. H. (1993) Genomics 17, 740-743
20. Forsyth, S., Horvath, A., and Coughlin, P. (2003) Genomics 81, 336-345
21. Horvath, A. J., Forsyth, S. L., and Coughlin, P. B. (2004) J. Mol. Evol. 59, 488-497
22. Inglis, J. D., and Hill, R. E. (1991) EMBO J. 10, 255-261
23. Barbour, K. W., Wei, F., Brannan, C., Flotte, T. R., Baumann, H., and Berger, F. G. (2002) Genomics 80, 515-522
24. Kaiserman, D., Knaggs, S., Scarff, K. L., Gillard, A., Mirza, G., Cadman, M., McKeone, R., Denny, P., Cooley, J., Benarafa, C., Remold-O'Donnell, E., Ragoussis, J., and Bird, P. I. (2002) Genomics 79, 349-362
25. Cheung, J., Wilson, M. D., Zhang, J., Khaja, R., MacDonald, J. R., Heng, H. H., Koop, B. F., and Scherer, S. W. (2003) Genome. Biol. 4, R47
26. Chomczynski, P., and Sacchi, N. (1987) Anal. Biochem. 162, 156-159
27. Le Bonniec, B. F., Guinto, E. R., and Stone, S. R. (1995) Biochemistry 34, 12241-12248
28. Rovelli, G., Stone, S. R., Guidolin, A., Sommer, J., and Monard, D. (1992) Biochemistry 31, 3542-3549
29. Olson, S. T., Bjork, I., and Shore, J. D. (1993) Methods Enzymol. 222, 525-559
30. Otwinowski, Z., and Minor, W. (1997) Methods Enzymol. 276, 307-326
31. CCP4 (1994) Acta Crystallogr. D. Biol. Crystallogr. 50, 760-763
32. Vagin, A., and Teplyakov, A. (2000) Acta Crystallogr. D. Biol. Crystallogr. 56, 1622-1624
33. Brunger, A. T., Adams, P. D., Clore, G. M., DeLano, W. L., Gros, P., Grosse-Kunstleve, R. W., Jiang, J. S., Kuszewski, J., Nilges, M., Pannu, N. S., Read, R. J., Rice, L. M., Simonson, T., and Warren, G. L. (1998) Acta Crystallogr. D. Biol. Crystallogr. 54, 905-921
34. Jones, T. A., Zou, J. Y., Cowan, S. W., and Kjeldgaard. (1991) Acta Crystallogr. A 47, 110-119
35. Murshudov, G. N., Vagin, A. A., and Dodson, E. J. (1997) Acta Crystallogr. D. Biol. Crystallogr. 53, 240-255
36. McDonald, I. K., and Thornton, J. M. (1994) J. Mol. Biol. 238, 777-793
37. Kabsch, W., and Sander, C. (1983) Biopolymers 22, 2577-2637
38. Kleywegt, G. J., and Jones, T. A. (1995) Structure 3, 535-540
39. Kraulis, P. J. (1991) J. App. Crystallogr. 24, 946-950
40. Esnouf, R. M. (1999) Acta Crystallogr. D Biol. Crystallogr. 55, 938-940
41. Merritt, E. A., and Bacon, D. J. (1997) Methods Enzymol. 277, 505-524
42. Nicholls, A., Sharp, K. A., and Honig, B. (1991) Proteins 11, 281-296
43. Barton, G. J. (1993) Protein Eng. 6, 37-40
44. Vriend, G. (1990) J. Mol. Graph. 8, 52-56, 29
45. Altschul, S. F., Madden, T. L., Schaffer, A. A., Zhang, J., Zhang, Z., Miller, W., and Lipman, D. J. (1997) Nucleic Acids Res. 25, 3389-3402
46. Adachi, J., and Hasegawa, M. (1996) MOLPHY: Programs for Molecular Phylogenetics, version 2.3, Institute of Statistical Mathematics, Tokyo
47. Irving, J. A., Askew, D. J., and Whisstock, J. C. (2004) Methods 32, 73-92
48. Higgins, D. G., Thompson, J. D., and Gibson, T. J. (1996) Methods Enzymol. 266, 383-402
49. Nielsen, R., and Yang, Z. (1998) Genetics 148, 929-936
50. Kumar, S., Tamura, K., and Nei, M. (2004) Brief. Bioinform. 5, 150-163
51. Yang, Z. (1998) Mol. Biol. Evol. 15, 568-573
52. Hopkins, P. C., Carrell, R. W., and Stone, S. R. (1993) Biochemistry 32, 7650-7657
53. Gooptu, B., Hazes, B., Chang, W. S., Dafforn, T. R., Carrell, R. W., Read, R. J., and Lomas, D. A. (2000) Proc. Natl. Acad. Sci. U. S. A. 97, 67-72
54. Beatty, K., Bieth, J., and Travis, J. (1980) J. Biol. Chem. 255, 3931-3934
55. Lomas, D. A., Stone, S. R., Llewellyn-Jones, C., Keogan, M. T., Wang, Z. M., Rubin, H., Carrell, R. W., and Stockley, R. A. (1995) J. Biol. Chem. 270, 23437-23443
56. Duranton, J., Adam, C., and Bieth, J. G. (1998) Biochemistry 37, 11239-11245
57. Elliott, P. R., Abrahams, J. P., and Lomas, D. A. (1998) J. Mol. Biol. 275, 419-425
58. Wei, A., Rubin, H., Cooperman, B. S., and Christianson, D. W. (1994) Nat. Struct. Biol. 1, 251-258
59. Barbour, K. W., Goodwin, R. L., Guillonneau, F., Wang, Y., Baumann, H., and Berger, F. G. (2002) Mol. Biol. Evol. 19, 718-727
60. Olson, S. T., Bjork, I., Sheffer, R., Craig, P. A., Shore, J. D., and Choay, J. (1992) J. Biol. Chem. 267, 12528-12538
61. O'Keeffe, D., Olson, S. T., Gasiunas, N., Gallagher, J., Baglin, T. P., and Huntington, J. A. (2004) J. Biol. Chem. 279, 50267-50273
62. Siddiqui, A. A., Hughes, A. E., Davies, R. J., and Hill, J. A. (1980) Biochem. Biophys. Res. Commun. 95, 1737-1742
63. Naidoo, N., Cooperman, B. S., Wang, Z. M., Liu, X. Z., and Rubin, H. (1995) J. Biol. Chem. 270, 14548-14555
64. Chaillan-Huntington, C. E., and Patston, P. A. (1998) J. Biol. Chem. 273, 4569-4573
65. Quinsey, N. S., Whisstock, J. C., Le Bonniec, B., Louvain, V., Bottomley, S. P., and Pike, R. N. (2002) J. Biol. Chem. 277, 15971-15978
66. Schechter, I., and Berger, A. (1967) Biochem. Biophys. Res. Commun. 27, 157-162
67. Plotnick, M. I., Schechter, N. M., Wang, Z. M., Liu, X., and Rubin, H. (1997) Biochemistry 36, 14601-14608
68. Rubin, H., Plotnick, M., Wang, Z. M., Liu, X., Zhong, Q., Schechter, N. M., and Cooperman, B. S. (1994) Biochemistry 33, 7627-7633
69. Borregaard, N., and Cowland, J. B. (1997) Blood 89, 3503-3521