Cloning and genomic characterization of sytdep, a new synaptotagmin XIV-related gene

Biochemical and Biophysical Research Communications

Volumn 340, Issue 2, 2006, Pages 386-394

  Herrero Turrión, M Javier ^a   Fukuda, Mitsunori ^b   Mollinedo, Faustino ^a  

^a Centro de Investigacion del Cancer   (Spain)

^b INST OF PHYS AND CHEMICAL RESEARCH   (Japan)

Author keywords

Alternative splicing; C2 domain; Cloning; Gene expression; Genomic characterization; Human neutrophils; Synaptotagmin XIV derived gene

Indexed keywords

AMINO ACID; POLYCLONAL ANTIBODY; SYNAPTOTAGMIN;

AMINO ACID SEQUENCE; AMINO TERMINAL SEQUENCE; ARTICLE; CARBOXY TERMINAL SEQUENCE; CELL DIFFERENTIATION; CHROMOSOME 1; CHROMOSOME 4; CONTROLLED STUDY; EXON; GENE IDENTIFICATION; GENE LOCATION; GENE TRANSLOCATION; GENOME ANALYSIS; HUMAN; HUMAN CELL; INTRON; MOLECULAR CLONING; MOLECULAR RECOGNITION; MOLECULAR WEIGHT; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN EXPRESSION; PROTEIN VARIANT; UPREGULATION;

AMINO ACID SEQUENCE; BASE SEQUENCE; CALCIUM-BINDING PROTEINS; CHROMOSOMES, HUMAN, PAIR 4; CLONING, MOLECULAR; GENOME, HUMAN; HL-60 CELLS; HUMANS; MOLECULAR SEQUENCE DATA; NEUTROPHILS; SEQUENCE ANALYSIS, DNA; SYNAPTOTAGMINS; TRANSLOCATION, GENETIC;

EID: 29644442950     PISSN: 0006291X     EISSN: 10902104     Source Type: Journal    
DOI: 10.1016/j.bbrc.2005.11.184     Document Type: Article

References (37)

1. B. Marqueze, F. Berton, and M. Seagar Synaptotagmins in membrane traffic: which vesicles do the tagmins tag? Biochimie 82 2000 409 420
2. M. Fukuda, J.E. Moreira, V. Liu, M. Sugimori, K. Mikoshiba, and R.R. Llinas Role of the conserved WHXL motif in the C terminus of synaptotagmin in synaptic vesicle docking Proc. Natl. Acad. Sci. USA 97 2000 14715 14719
3. 2+ sensor that triggers exocytosis? Nat. Rev. Mol. Cell. Biol. 3 2002 498 508
4. T.C. Sudhof Synaptotagmins: Why so many? J. Biol. Chem. 277 2002 7629 7632
5. 2+-regulated membrane fusion by synaptotagmin and SNAREs Science 304 2004 435 438
6. M. Craxton Synaptotagmin gene content of the sequenced genomes BMC Genom. 5 2004 43
7. M. Yoshihara, and E.S. Montana The synaptotagmins: calcium sensors for vesicular trafficking Neuroscientist 10 2004 566 574
8. E. Hui, J. Bai, P. Wang, M. Sugimori, R.R. Llinas, and E.R. Chapman Three distinct kinetic groupings of the synaptotagmin family: candidate sensors for rapid and delayed exocytosis Proc. Natl. Acad. Sci. USA 102 2005 5210 5214
9. M. Fukuda, and K. Mikoshiba A novel alternatively spliced variant of synaptotagmin VI lacking a transmembrane domain. Implications for distinct functions of the two isoforms J. Biol. Chem. 274 1999 31428 31434
10. M. Craxton, and M. Goedert Alternative splicing of synaptotagmins involving transmembrane exon skipping FEBS Lett. 460 1999 417 422
11. M. Fukuda, Y. Ogata, C. Saegusa, E. Kanno, and K. Mikoshiba Alternative splicing isoforms of synaptotagmin VII in the mouse, rat and human Biochem. J. 365 2002 173 180
12. T. Virmani, W. Han, X. Liu, T.C. Sudhof, and E.T. Kavalali Synaptotagmin 7 splice variants differentially regulate synaptic vesicle recycling EMBO J. 22 2003 5347 5357
13. M. Craxton Genomic analysis of synaptotagmin genes Genomics 77 2001 43 49
14. M. Fukuda Molecular cloning, expression, and characterization of a novel class of synaptotagmin (Syt XIV) conserved from Drosophila to humans J. Biochem. (Tokyo) 133 2003 641 649
15. F. Mollinedo, A.M. Santos-Beneit, and C. Gajate The human leukemia cell line HL-60 as a cell culture model to study neutrophil functions and inflammatory responses M. Clynes Animal Cell Culture Techniques 1998 Springer-Verlag Heidelberg, Germany 264 297
16. B. Martin-Martin, S.M. Nabokina, P.A. Lazo, and F. Mollinedo Co-expression of several human syntaxin genes in neutrophils and differentiating HL-60 cells: variant isoforms and detection of syntaxin 1 J. Leukoc. Biol. 65 1999 397 406
17. F. Mollinedo, B. Martin-Martin, J. Calafat, S.M. Nabokina, and P.A. Lazo Role of vesicle-associated membrane protein-2, through Q-soluble N-ethylmaleimide-sensitive factor attachment protein receptor/R-soluble N-ethylmaleimide-sensitive factor attachment protein receptor interaction, in the exocytosis of specific and tertiary granules of human neutrophils J. Immunol. 170 2003 1034 1042
18. J.D. Thompson, D.G. Higgins, and T.J. Gibson CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice Nucleic Acids Res. 22 1994 4673 4680
19. B. Martin-Martin, S.M. Nabokina, J. Blasi, P.A. Lazo, and F. Mollinedo Involvement of SNAP-23 and syntaxin 6 in human neutrophil exocytosis Blood 96 2000 2574 2583
20. S. Nabokina, G. Egea, J. Blasi, and F. Mollinedo Intracellular location of SNAP-25 in human neutrophils Biochem. Biophys. Res. Commun. 239 1997 592 597
21. A. Nakhost, G. Houeland, V.F. Castellucci, and W.S. Sossin Differential regulation of transmitter release by alternatively spliced forms of synaptotagmin I J. Neurosci. 23 2003 6238 6244
22. J. Bai, and E.R. Chapman The C2 domains of synaptotagmin-partners in exocytosis Trends Biochem. Sci. 29 2004 143 151
23. 2+-binding domain J. Biol. Chem. 273 1998 15879 15882
24. 2+-binding module Biochemistry 40 2001 5854 5860
25. M. Fukuda, A. Yamamoto, and K. Mikoshiba Formation of crystalloid endoplasmic reticulum induced by expression of synaptotagmin lacking the conserved WHXL motif in the C terminus. Structural importance of the WHXL motif in the C2B domain J. Biol. Chem. 276 2001 41112 41119
26. M. Fukuda, E. Kanno, Y. Ogata, and K. Mikoshiba Mechanism of the SDS-resistant synaptotagmin clustering mediated by the cysteine cluster at the interface between the transmembrane and spacer domains J. Biol. Chem. 276 2001 40319 40325
27. M.R. Green Pre-mRNA splicing Annu. Rev. Genet. 20 1986 671 708
28. F. Mollinedo Human neutrophil granules and exocytosis molecular control Inmunologia 22 2003 340 358
29. C. Rickman, D.A. Archer, F.A. Meunier, M. Craxton, M. Fukuda, R.D. Burgoyne, and B. Davletov Synaptotagmin interaction with the syntaxin/SNAP-25 dimer is mediated by an evolutionarily conserved motif and is sensitive to inositol hexakisphosphate J. Biol. Chem. 279 2004 12574 12579
30. J. Bai, C.T. Wang, D.A. Richards, M.B. Jackson, and E.R. Chapman Fusion pore dynamics are regulated by synaptotagmin•t-SNARE interactions Neuron 41 2004 929 942
31. S.K. Rao, C. Huynh, V. Proux-Gillardeaux, T. Galli, and N.W. Andrews Identification of SNAREs involved in synaptotagmin VII-regulated lysosomal exocytosis J. Biol. Chem. 279 2004 20471 20479
32. M. Fukuda, J.E. Moreira, F.M. Lewis, M. Sugimori, M. Niinobe, K. Mikoshiba, and R. Llinas Role of the C2B domain of synaptotagmin in vesicular release and recycling as determined by specific antibody injection into the squid giant synapse preterminal Proc. Natl. Acad. Sci. USA 92 1995 10708 10712
33. +2-independent SNARE complex interaction J. Cell Biol. 147 1999 589 598
34. I. Fernandez, D. Arac, J. Ubach, S.H. Gerber, O. Shin, Y. Gao, R.G. Anderson, T.C. Sudhof, and J. Rizo Three-dimensional structure of the synaptotagmin 1 C2B-domain: synaptotagmin 1 as a phospholipid binding machine Neuron 32 2001 1057 1069
35. G. Schiavo, Q.M. Gu, G.D. Prestwich, T.H. Sollner, and J.E. Rothman Calcium-dependent switching of the specificity of phosphoinositide binding to synaptotagmin Proc. Natl. Acad. Sci. USA 93 1996 13327 13332
36. B. Mehrotra, J.T. Elliott, J. Chen, J.D. Olszewski, A.A. Profit, A. Chaudhary, M. Fukuda, K. Mikoshiba, and G.D. Prestwich Selective photoaffinity labeling of the inositol polyphosphate binding C2B domains of synaptotagmins J. Biol. Chem. 272 1997 4237 4244
37. J. Kyte, and R.F. Doolittle A simple method for displaying the hydropathic character of a protein J. Mol. Biol. 157 1982 105 132