-
1
-
-
0001952059
-
The ATP dependent restriction enzymes
-
Roberts,R.J., Lloyd,R.S. and Linn,S.M. (eds), Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
Bickle,T.A. (1993) The ATP dependent restriction enzymes. In Roberts,R.J., Lloyd,R.S. and Linn,S.M. (eds), Nucleases. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, pp. 89-110.
-
(1993)
Nucleases
, pp. 89-110
-
-
Bickle, T.A.1
-
2
-
-
0002598414
-
Type II restriction enzymes
-
In Linn,S.M., Lloyd,R.S. and Roberts,R.J. (eds), Cold Spring Harbor Laboratory Press, Cold Spring, Harbor, NY
-
Roberts,R.J. and Halford,S.E. (1993) Type II restriction enzymes. In Linn,S.M., Lloyd,R.S. and Roberts,R.J. (eds), Nucleases. Cold Spring Harbor Laboratory Press, Cold Spring, Harbor, NY, pp. 35-88.
-
(1993)
Nucleases
, pp. 35-88
-
-
Roberts, R.J.1
Halford, S.E.2
-
3
-
-
0024833293
-
Recognition of DNA by type II restriction enzymes
-
Bennett,S.P. and Halford,S.E. (1989) Recognition of DNA by type II restriction enzymes. Curr. Top. Cell Regul., 30, 57-104.
-
(1989)
Curr. Top. Cell Regul.
, vol.30
, pp. 57-104
-
-
Bennett, S.P.1
Halford, S.E.2
-
4
-
-
0030911133
-
Recognition and cleavage of DNA by type-II restriction endonucleases
-
Pingoud,A. and Jeltsch,A. (1997) Recognition and cleavage of DNA by type-II restriction endonucleases. Eur. J. Biochem., 246, 1-22.
-
(1997)
Eur. J. Biochem.
, vol.246
, pp. 1-22
-
-
Pingoud, A.1
Jeltsch, A.2
-
5
-
-
0026647626
-
Sequence-specific DNA binding by the MspI DNA MTase
-
Dubey,A.K. and Robert,R.J. (1992) Sequence-specific DNA binding by the MspI DNA MTase. Nucleic Acids Res., 20, 3167-3173
-
(1992)
Nucleic Acids Res.
, vol.20
, pp. 3167-3173
-
-
Dubey, A.K.1
Robert, R.J.2
-
6
-
-
0027422635
-
On the origins, structures and functions of restriction-modification enzymes
-
Heitman,J. (1993) On the origins, structures and functions of restriction-modification enzymes. Genet. Eng., 15, 57-108.
-
(1993)
Genet. Eng.
, vol.15
, pp. 57-108
-
-
Heitman, J.1
-
7
-
-
0035175516
-
REBASE - Restriction enzymes and methylases
-
Roberts,R.J. and Macelis,D. (2001) REBASE - restriction enzymes and methylases. Nucleic Acids Res., 29, 268-269.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 268-269
-
-
Roberts, R.J.1
Macelis, D.2
-
8
-
-
0037389511
-
A nomenclature for restriction enzymes, DNA methyltransferases, homing endonucleases and their genes
-
Roberts,R.J., Belfort,M., Bestor,T., Bhagwat,A.S., Bickle,T.A., Bitinaite,J., Blumenthal,R.M., Degtyarev,S.Kh., Dryden,D.T., Dybvig,K. et al. (2003) A nomenclature for restriction enzymes, DNA methyltransferases, homing endonucleases and their genes. Nucleic Acids Res., 31, 1805-1812.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 1805-1812
-
-
Roberts, R.J.1
Belfort, M.2
Bestor, T.3
Bhagwat, A.S.4
Bickle, T.A.5
Bitinaite, J.6
Blumenthal, R.M.7
Degtyarev, S.Kh.8
Dryden, D.T.9
Dybvig, K.10
-
9
-
-
0025879081
-
M.KpnI is an adenine-methyltransferase
-
Kiss,A., Finta,C. and Venetianer,P. (1991) M.KpnI is an adenine-methyltransferase. Nucleic Acids Res., 19, 3460.
-
(1991)
Nucleic Acids Res.
, vol.19
, pp. 3460
-
-
Kiss, A.1
Finta, C.2
Venetianer, P.3
-
10
-
-
0037424385
-
Kinetic and catalytic properties of dimeric KpnI DNA methyltransferase
-
Bheemanaik,S., Chandrashekaran,S., Nagaraja,V. and Rao,D.N. (2003) Kinetic and catalytic properties of dimeric KpnI DNA methyltransferase. J. Biol. Chem., 278, 7863-7874.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 7863-7874
-
-
Bheemanaik, S.1
Chandrashekaran, S.2
Nagaraja, V.3
Rao, D.N.4
-
11
-
-
0032883428
-
Characterization of DNA binding activities of over-expressed KpnI REase and modification methylase
-
Chandrashekaran,S., Babu,P. and Nagaraja,V. (1999) Characterization of DNA binding activities of over-expressed KpnI REase and modification methylase. J. Biosci., 24, 269-277.
-
(1999)
J. Biosci.
, vol.24
, pp. 269-277
-
-
Chandrashekaran, S.1
Babu, P.2
Nagaraja, V.3
-
12
-
-
0030570441
-
Sequence specific DNA binding of the phage Mu C protein: Footprinting analysis reveals altered DNA conformation upon protein binding
-
Ramesh,V. and Nagaraja,V. (1996) Sequence specific DNA binding of the phage Mu C protein: footprinting analysis reveals altered DNA conformation upon protein binding. J. Mol. Biol., 260, 22-33.
-
(1996)
J. Mol. Biol.
, vol.260
, pp. 22-33
-
-
Ramesh, V.1
Nagaraja, V.2
-
13
-
-
0035860307
-
A novel bipartite mode of binding of M.smegmatis topoisomerase I to its recognition sequence
-
Sikder,D. and Nagaraja,V. (2001) A novel bipartite mode of binding of M.smegmatis topoisomerase I to its recognition sequence. J. Mol. Biol., 312, 347-357.
-
(2001)
J. Mol. Biol.
, vol.312
, pp. 347-357
-
-
Sikder, D.1
Nagaraja, V.2
-
14
-
-
3543135722
-
-
PhD thesis, Indian Institute of Science, Bangalore, India
-
Chandrashekaran,S. (2002) PhD thesis, Indian Institute of Science, Bangalore, India.
-
(2002)
-
-
Chandrashekaran, S.1
-
15
-
-
0028187896
-
DNase I footprinting
-
Kneale,G. (ed.), Humana Press, Totowa, NJ
-
Leblanc,B. and Moss,T. (1994) DNase I footprinting. In Kneale,G. (ed.), DNA-Protein Interactions - Principles and Protocols. Humana Press, Totowa, NJ, pp. 1-10.
-
(1994)
DNA-Protein Interactions - Principles and Protocols
, pp. 1-10
-
-
Leblanc, B.1
Moss, T.2
-
16
-
-
0035515226
-
A versatile in vivo footprinting technique using 1, 10-phenanthroline-copper complex to study important cellular processes
-
Basak,S. and Nagaraja,V. (2001) A versatile in vivo footprinting technique using 1, 10-phenanthroline-copper complex to study important cellular processes. Nucleic Acids Res., 29, e105.
-
(2001)
Nucleic Acids Res.
, vol.29
-
-
Basak, S.1
Nagaraja, V.2
-
17
-
-
0021710080
-
E.coli integration host factor binds to specific sites in DNA
-
Craig,N.L. and Nash,H.A. (1984) E.coli integration host factor binds to specific sites in DNA. Cell, 39, 707-716.
-
(1984)
Cell
, vol.39
, pp. 707-716
-
-
Craig, N.L.1
Nash, H.A.2
-
18
-
-
0023425411
-
Missing contact probing of DNA-protein interactions
-
Brunelle,A. and Schleif,R.F. (1987) Missing contact probing of DNA-protein interactions. Proc. Natl Acad. Sci. USA, 84, 6673-6676.
-
(1987)
Proc. Natl. Acad. Sci. USA
, vol.84
, pp. 6673-6676
-
-
Brunelle, A.1
Schleif, R.F.2
-
19
-
-
0026682657
-
Transcription factors: Structural families and principles of DNA recognition
-
Pabo,C.O. and Sauer,R.T. (1992) Transcription factors: structural families and principles of DNA recognition. Annu. Rev. Biochem., 61, 1053-1095.
-
(1992)
Annu. Rev. Biochem.
, vol.61
, pp. 1053-1095
-
-
Pabo, C.O.1
Sauer, R.T.2
-
21
-
-
0032145158
-
Chemical display of thymine residues flipped out by DNA methyltransferases
-
Serva,S., Weinhold,E., Roberts,R.J. and Klimasauskas,S. (1998) Chemical display of thymine residues flipped out by DNA methyltransferases. Nucleic Acids Res., 26, 3473-3479.
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 3473-3479
-
-
Serva, S.1
Weinhold, E.2
Roberts, R.J.3
Klimasauskas, S.4
-
22
-
-
0023720661
-
DNase I footprinting of restriction enzymes
-
Fox,K.R. (1988) DNase I footprinting of restriction enzymes. Biochem. Biophys. Res. Commun., 155, 779-785.
-
(1988)
Biochem. Biophys. Res. Commun.
, vol.155
, pp. 779-785
-
-
Fox, K.R.1
-
23
-
-
0028967016
-
Sequence-specific DNA recognition by the SmaI endonuclease
-
Withers,B.E. and Dunbar,J.C. (1995) Sequence-specific DNA recognition by the SmaI endonuclease. J. Biol. Chem., 270, 6496-6504.
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 6496-6504
-
-
Withers, B.E.1
Dunbar, J.C.2
-
24
-
-
0029027802
-
DNA determinants in sequence specific recognition by XmaI endonuclease
-
Withers,B.E. and Dunbar,J.C. (1995) DNA determinants in sequence specific recognition by XmaI endonuclease. Nucleic Acids Res., 23, 3571-3577.
-
(1995)
Nucleic Acids Res.
, vol.23
, pp. 3571-3577
-
-
Withers, B.E.1
Dunbar, J.C.2
-
25
-
-
0026696177
-
A site-directed mutagenesis study to identify amino acid residues involved in the catalytic function of the restriction endonuclease EcoRV
-
Selent,U., Ruter,T., Kohler,E., Liedtke,M., Thielking,V., Alves,J., Oelgeschlager,T., Wolfes,H., Peters,F. and Pingoud,A. (1992) A site-directed mutagenesis study to identify amino acid residues involved in the catalytic function of the restriction endonuclease EcoRV. Biochemistry, 31, 4808-4815.
-
(1992)
Biochemistry
, vol.31
, pp. 4808-4815
-
-
Selent, U.1
Ruter, T.2
Kohler, E.3
Liedtke, M.4
Thielking, V.5
Alves, J.6
Oelgeschlager, T.7
Wolfes, H.8
Peters, F.9
Pingoud, A.10
-
26
-
-
0026650908
-
On the catalytic mechanism of EcoRI and EcoRV. A detailed proposal based on biochemical results, structural data and molecular modelling
-
Jeltsch,A., Alves,J., Maass,G. and Pingoud,A. (1992) On the catalytic mechanism of EcoRI and EcoRV. A detailed proposal based on biochemical results, structural data and molecular modelling. FEBS Lett., 304, 4-8.
-
(1992)
FEBS Lett.
, vol.304
, pp. 4-8
-
-
Jeltsch, A.1
Alves, J.2
Maass, G.3
Pingoud, A.4
-
27
-
-
0034640127
-
Binding of EcoP15I DNA methyltransferase to DNA reveals a large structural distortion within the recognition sequence
-
Reddy,Y.V. and Rao,D.N. (2000) Binding of EcoP15I DNA methyltransferase to DNA reveals a large structural distortion within the recognition sequence. J. Mol. Biol., 298, 597-610.
-
(2000)
J. Mol. Biol.
, vol.298
, pp. 597-610
-
-
Reddy, Y.V.1
Rao, D.N.2
-
28
-
-
0017692551
-
Role of the 2-amino group of deoxyguanosine in sequence recognition by EcoRI restriction and modification enzymes
-
Modrich,P and Rubin,RA. (1977) Role of the 2-amino group of deoxyguanosine in sequence recognition by EcoRI restriction and modification enzymes. J. Biol. Chem., 252, 7273-7278.
-
(1977)
J. Biol. Chem.
, vol.252
, pp. 7273-7278
-
-
Modrich, P.1
Rubin, R.A.2
-
29
-
-
0017730133
-
EcoRI methylase. Physical and catalytic properties of the homogeneous enzyme
-
Rubin,R.A. and Modrich,P. (1977) EcoRI methylase. Physical and catalytic properties of the homogeneous enzyme. J. Biol. Chem., 252, 7265-7272
-
(1977)
J. Biol. Chem.
, vol.252
, pp. 7265-7272
-
-
Rubin, R.A.1
Modrich, P.2
-
30
-
-
0022910040
-
The effects of base analogue substitutions on the methylation by the EcoRI modification methylase of octadeoxyribonucleotides containing modified EcoRI recognition sequences
-
Brennan,C.A., Van Cleve,M.D. and Gumport,R.I. (1986) The effects of base analogue substitutions on the methylation by the EcoRI modification methylase of octadeoxyribonucleotides containing modified EcoRI recognition sequences. J. Biol. Chem., 261, 7279-7286.
-
(1986)
J. Biol. Chem.
, vol.261
, pp. 7279-7286
-
-
Brennan, C.A.1
Van Cleve, M.D.2
Gumport, R.I.3
-
31
-
-
0022910040
-
The effects of base analogue substitutions on the cleavage by the EcoRI restriction endonuclease of octadeoxyribonucleotides containing modified EcoRI recognition sequences
-
Brennan,C.A., Van Cleve,M.D. and Gumport,R.I. (1986) The effects of base analogue substitutions on the cleavage by the EcoRI restriction endonuclease of octadeoxyribonucleotides containing modified EcoRI recognition sequences. J. Biol. Chem., 261, 7270-7278.
-
(1986)
J. Biol. Chem.
, vol.261
, pp. 7270-7278
-
-
Brennan, C.A.1
Van Cleve, M.D.2
Gumport, R.I.3
-
32
-
-
0023034951
-
Differences in the kinetic properties of BamHI endonuclease and methylase with linear DNA substrates
-
Nardone,G., George,J. and Chirikjian,J.G. (1986) Differences in the kinetic properties of BamHI endonuclease and methylase with linear DNA substrates. J. Biol. Chem., 261, 12128-12133.
-
(1986)
J. Biol. Chem.
, vol.261
, pp. 12128-12133
-
-
Nardone, G.1
George, J.2
Chirikjian, J.G.3
-
33
-
-
0026553161
-
Oligodeoxynucleotides containing 4-thiothymidine and 6-thiodeoxyguanosine as affinity labels for the EcoRV restriction endonuclease and modification methylase
-
Nikiforov,T.T. and Connolly,B.A. (1992) Oligodeoxynucleotides containing 4-thiothymidine and 6-thiodeoxyguanosine as affinity labels for the EcoRV restriction endonuclease and modification methylase. Nucleic Acids Res., 20, 1209-1214.
-
(1992)
Nucleic Acids Res.
, vol.20
, pp. 1209-1214
-
-
Nikiforov, T.T.1
Connolly, B.A.2
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