Sampling the complex energy landscape of a simple β-hairpin

Journal of Chemical Physics

Volumn 119, Issue 13, 2003, Pages 6403-6406

  Wei, Guanghong ^a   Derreumaux, Philippe ^b   Mousseau, Normand ^a  

^a UNIVERSITÉ DE MONTRÉAL   (Canada)

^b CNRS Aix Marseille University   (France)

Author keywords

[No Author keywords available]

Indexed keywords

COMPUTER SIMULATION; KINETIC ENERGY; MONTE CARLO METHODS; RELAXATION PROCESSES;

ACTIVATION-RELAXATION;

HIGH ENERGY PHYSICS;

EID: 0142116251     PISSN: 00219606     EISSN: None     Source Type: Journal    
DOI: 10.1063/1.1613642     Document Type: Article

References (27)

1. V. Munoz, P. A. Thompson, J. Hofrichter, and W. A. Eaton, Nature (London) 390, 196 (1997).
2. V. Munoz, E. R. Henry, J. Hofrichter, and W. A. Eaton, Proc. Natl. Acad. Sci. U.S.A. 95, 5872 (1998).
3. A. Kolinski, B. Ilkowski, and J. Skolnick, Biophys. J. 77, 2942 (1999).
4. D. K. Klimov and D. Thirumalai, Proc. Natl. Acad. Sci. U.S.A. 97, 2544 (2000).
5. H. Wang, J. Varady, L. Ng, and S. Sung, Proteins 37, 325 (1999).
6. A. M. Bonvin and W. F. van Gunsteren, J. Mol. Biol. 296, 255 (2000).
7. V. S. Pande and D. S. Rokhsar, Proc. Natl. Acad. Sci. U.S.A. 96, 9062 (1999).
8. A. R. Dinner, T. Lazaridis, and M. Karplus, Proc. Natl. Acad. Sci. U.S.A. 96, 9068 (1999).
9. B. Zagrobic, E. J. Sorin, and V. Pande, J. Mol. Biol. 313, 151 (2001).
10. A. E. García and K. Y. Sanbonmatsu, Proteins 42, 345 (2001).
11. Y. Zhou and A. Linhananta, Proteins 47, 154 (2002).
12. N. Kamiya, J. Higo, and H. Nakamura, Protein Sci. 11, 2297 (2002).
13. R. Zhou, B. J. Berne, and R. Germain, Proc. Natl. Acad. Sci. U.S.A. 98, 14931 (2001).
14. A. R. Fersht, Proc. Natl. Acad. Sci. U.S.A. 99, 14122 (2002).
15. G. T. Barkema and N. Mousseau, Phys. Rev. Lett. 77, 4358 (1996).
16. R. Malek and N. Mousseau, Phys. Rev. E 62, 7723 (2000).
17. G. Wei, N. Mousseau, and P. Derreumaux, J. Chem. Phys. 117, 11379 (2002).
18. P. Derreumaux, Phys. Rev. Lett. 85, 206 (2000).
19. F. Forcellino and P. Derreumaux, Proteins 45, 159 (2001).
20. H. Guo, N. Gresh, B. Roques, and D. Salahub, J. Phys. Chem. B 104, 9746 (2000).
21. N. Kobko, L. Paraskevas, E. del Rio, and J. Dannenberg, J. Am. Chem. Soc. 123, 4348 (2001).
22. P. Derreumaux, J. Chem. Phys. 109, 1567 (1998).
23. A. M. Gronenborn et al., Science 253, 657 (1991).
24. F. J. Blanco, G. Rivas, and L. Serrano, Nat. Struct. Biol. 1, 584 (1994).
25. R. Koradi, M. Billeter, and K. Wuthrich, J. Mol. Graphics 14, 51 (1996).
26. M. Ramirez-Alvarado, T. Kortemme, F. J. Blanco, and L. Serrano, Bioorg Med. Chem. 7, 93 (1999).
27. P. Derreumaux and T. Schlick, Biophys. J. 74, 72 (1998).