메뉴 건너뛰기




Volumn 42, Issue 6, 2004, Pages 2388-2397

Insertions, deletions, and single-nucleotide polymorphisms at rare restriction enzyme sites enhance discriminatory power of polymorphic amplified typing sequences, a novel strain typing system for Escherichia coli O157:H7

Author keywords

[No Author keywords available]

Indexed keywords

DNA;

EID: 2942527347     PISSN: 00951137     EISSN: None     Source Type: Journal    
DOI: 10.1128/JCM.42.6.2388-2397.2004     Document Type: Article
Times cited : (15)

References (40)
  • 1
    • 0002713064 scopus 로고
    • Laboratory procedures for the epidemiologic analysis of microorganisms
    • P. R. Murray, E. J. Baron, M. A. Pfaller, F. C. Tenover, and R. H. Yolken (ed.). ASM Press, Washington, D.C.
    • Arbeit, R. D. 1995. Laboratory procedures for the epidemiologic analysis of microorganisms, p. 190-208. In P. R. Murray, E. J. Baron, M. A. Pfaller, F. C. Tenover, and R. H. Yolken (ed.), Manual of clinical microbiology, 6th ed. ASM Press, Washington, D.C.
    • (1995) Manual of Clinical Microbiology, 6th Ed. , pp. 190-208
    • Arbeit, R.D.1
  • 2
    • 0028097236 scopus 로고
    • Laboratory investigation of a multistate food-borne outbreak of Escherichia coli O157:H7 by using pulsed-field gel electrophoresis and phage typing
    • Barrett, T. J., H. Lior, J. H. Green, R. Khakhria, J. G. Wells, B. P. Bell, K. D. Greene, J. Lewis, and P. M. Griffin. 1994. Laboratory investigation of a multistate food-borne outbreak of Escherichia coli O157:H7 by using pulsed-field gel electrophoresis and phage typing. J. Clin. Microbiol. 32:3013-3017.
    • (1994) J. Clin. Microbiol. , vol.32 , pp. 3013-3017
    • Barrett, T.J.1    Lior, H.2    Green, J.H.3    Khakhria, R.4    Wells, J.G.5    Bell, B.P.6    Greene, K.D.7    Lewis, J.8    Griffin, P.M.9
  • 4
    • 0026639202 scopus 로고
    • DNA fingerprinting of Escherichia coli O157:H7 strains by pulsed field gel electrophoresis
    • Bohm, H., and H. Karch. 1992. DNA fingerprinting of Escherichia coli O157:H7 strains by pulsed field gel electrophoresis. J. Clin. Microbiol. 30:2169-2172.
    • (1992) J. Clin. Microbiol. , vol.30 , pp. 2169-2172
    • Bohm, H.1    Karch, H.2
  • 5
    • 0345668476 scopus 로고    scopus 로고
    • Majority of divergence between closely related DNA samples is due to indels
    • Britten, R. J., L. Rowen, J. Williams, and R. A. Cameron. 2003. Majority of divergence between closely related DNA samples is due to indels. Proc. Natl. Acad. Sci. USA 100:4661-4665.
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 4661-4665
    • Britten, R.J.1    Rowen, L.2    Williams, J.3    Cameron, R.A.4
  • 6
    • 0037952995 scopus 로고    scopus 로고
    • Evaluation of pulsed-field gel electrophoresis as a tool for determining the degree of genetic relatedness between strains of Escherichia coli O157:H7
    • Davis, M. A., D. D. Hancock, T. E. Besser, and D. R. Call. 2003. Evaluation of pulsed-field gel electrophoresis as a tool for determining the degree of genetic relatedness between strains of Escherichia coli O157:H7. J. Clin. Microbiol. 41:1843-1849.
    • (2003) J. Clin. Microbiol. , vol.41 , pp. 1843-1849
    • Davis, M.A.1    Hancock, D.D.2    Besser, T.E.3    Call, D.R.4
  • 9
    • 0030856706 scopus 로고    scopus 로고
    • Rapid pulsed-field gel electrophoresis protocol for typing of Escherichia coli O157:H7 and other gram-negative organisms in 1 day
    • Gautom, R. K. 1997. Rapid pulsed-field gel electrophoresis protocol for typing of Escherichia coli O157:H7 and other gram-negative organisms in 1 day. J. Clin. Microbiol. 35:727-733.
    • (1997) J. Clin. Microbiol. , vol.35 , pp. 727-733
    • Gautom, R.K.1
  • 12
    • 0027284243 scopus 로고
    • Comparison and genomic sizing of Escherichia coli O157:H7 isolates by pulsed-field gel electrophoresis
    • Harsono, K. D., C. W. Kaspar, and J. B. Luchansky. 1993. Comparison and genomic sizing of Escherichia coli O157:H7 isolates by pulsed-field gel electrophoresis. Appl. Environ Microbiol. 59:3141-3144.
    • (1993) Appl. Environ Microbiol. , vol.59 , pp. 3141-3144
    • Harsono, K.D.1    Kaspar, C.W.2    Luchansky, J.B.3
  • 14
    • 2942540795 scopus 로고
    • DNA subtyping and pattern analysis methods for bacterial pathogens: Who's who in an outbreak
    • Hill, W. E., B. J. Tenge, and K. C. Jinneman. 1995. DNA subtyping and pattern analysis methods for bacterial pathogens: who's who in an outbreak. Clin. Microbiol. Newsl. 17:137-142.
    • (1995) Clin. Microbiol. Newsl. , vol.17 , pp. 137-142
    • Hill, W.E.1    Tenge, B.J.2    Jinneman, K.C.3
  • 15
    • 0029041849 scopus 로고
    • Use of pulsed-field gel electrophoresis for epidemiological study of Escherichia coli O157:H7 during a food-borne outbreak
    • Johnson, J. M., S. D. Weagant, K. C. Jinnemen, and J. L. Bryant. 1995. Use of pulsed-field gel electrophoresis for epidemiological study of Escherichia coli O157:H7 during a food-borne outbreak. Appl. Environ. Microbiol. 61:2806-2808.
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 2806-2808
    • Johnson, J.M.1    Weagant, S.D.2    Jinnemen, K.C.3    Bryant, J.L.4
  • 17
    • 0036708355 scopus 로고    scopus 로고
    • Technical improvement to prevent DNA degradation of enteric pathogens in pulsed-field gel electrophoresis
    • Koort, J. M. K., S. Lukinmaa, M. Rantala, E. Unkila, and A. Siitonen. 2002. Technical improvement to prevent DNA degradation of enteric pathogens in pulsed-field gel electrophoresis. J. Clin. Microbiol. 40:3497-3498.
    • (2002) J. Clin. Microbiol. , vol.40 , pp. 3497-3498
    • Koort, J.M.K.1    Lukinmaa, S.2    Rantala, M.3    Unkila, E.4    Siitonen, A.5
  • 18
    • 0036209592 scopus 로고    scopus 로고
    • Strains of Escherichia coli O157:H7 differ primarily by insertions or deletions, not single-nucleotide polymorphisms
    • Kudva, I. T., P. S. Evans, N. T. Perna, T. J. Barrett, F. M. Ausubel, F. R. Blattner, and S. B. Calderwood. 2002. Strains of Escherichia coli O157:H7 differ primarily by insertions or deletions, not single-nucleotide polymorphisms. J. Bacteriol. 184:1873-1879.
    • (2002) J. Bacteriol. , vol.184 , pp. 1873-1879
    • Kudva, I.T.1    Evans, P.S.2    Perna, N.T.3    Barrett, T.J.4    Ausubel, F.M.5    Blattner, F.R.6    Calderwood, S.B.7
  • 20
    • 0032482924 scopus 로고    scopus 로고
    • Molecular archaeology of the Escherichia coli genome
    • Lawrence, J. G., and H. Ochman. 1998. Molecular archaeology of the Escherichia coli genome. Proc. Natl. Acad. Sci. USA 95:9413-9417.
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 9413-9417
    • Lawrence, J.G.1    Ochman, H.2
  • 21
    • 0029860724 scopus 로고    scopus 로고
    • High mutation frequencies among Escherichia coli and Salmonella pathogens
    • LeClerc, J. E., B. Li, W. L. Payne, and T. A. Cebula. 1996. High mutation frequencies among Escherichia coli and Salmonella pathogens. Science 274:1208-1211.
    • (1996) Science , vol.274 , pp. 1208-1211
    • LeClerc, J.E.1    Li, B.2    Payne, W.L.3    Cebula, T.A.4
  • 22
    • 0032764023 scopus 로고    scopus 로고
    • Promiscuous origin of a chimeric sequence in the Escherichia coli O157: H7 genome
    • LeClerc, J. E., B. Li, W. L. Payne, and T. A. Cebula. 1999. Promiscuous origin of a chimeric sequence in the Escherichia coli O157:H7 genome. J. Bacteriol. 181:7614-7617.
    • (1999) J. Bacteriol. , vol.181 , pp. 7614-7617
    • LeClerc, J.E.1    Li, B.2    Payne, W.L.3    Cebula, T.A.4
  • 23
    • 0032930707 scopus 로고    scopus 로고
    • Changes in pulsed-field gel electrophoresis patterns in clinical isolates of enterohemorrhagic Escherichia coli O157:H7 associated with loss of Shiga toxin genes
    • Murase, T., S. Yamai, and H. Watanabe. 1999. Changes in pulsed-field gel electrophoresis patterns in clinical isolates of enterohemorrhagic Escherichia coli O157:H7 associated with loss of Shiga toxin genes. Curr. Microbiol. 38:48-50.
    • (1999) Curr. Microbiol. , vol.38 , pp. 48-50
    • Murase, T.1    Yamai, S.2    Watanabe, H.3
  • 24
    • 0029682343 scopus 로고    scopus 로고
    • Molecular population genetic analysis of emerged bacterial pathogens: Selected insights
    • Musser, J. M. 1996. Molecular population genetic analysis of emerged bacterial pathogens: selected insights. Emerg. Infect. Dis. 2:1-17.
    • (1996) Emerg. Infect. Dis. , vol.2 , pp. 1-17
    • Musser, J.M.1
  • 25
    • 0037311986 scopus 로고    scopus 로고
    • Multilocus sequence typing reveals a lack of diversity among Escherichia coli O157:H7 isolates that are distinct by pulsed-field gel electrophoresis
    • Noller, A. C., M. C. McEllistrem, O. C. Stine, J. G. Morris, Jr., D. J. Boxrud, B. Dixon, and L. H. Harrison. 2003. Multilocus sequence typing reveals a lack of diversity among Escherichia coli O157:H7 isolates that are distinct by pulsed-field gel electrophoresis. J. Clin. Microbiol. 41:675-679.
    • (2003) J. Clin. Microbiol. , vol.41 , pp. 675-679
    • Noller, A.C.1    McEllistrem, M.C.2    Stine, O.C.3    Morris Jr., J.G.4    Boxrud, D.J.5    Dixon, B.6    Harrison, L.H.7
  • 26
    • 0034682335 scopus 로고    scopus 로고
    • Lateral gene transfer and the nature of bacterial innovation
    • Ochman, H., J. G. Lawrence, and E. A. Groisman. 2000. Lateral gene transfer and the nature of bacterial innovation. Nature 405:299-304.
    • (2000) Nature , vol.405 , pp. 299-304
    • Ochman, H.1    Lawrence, J.G.2    Groisman, E.A.3
  • 29
    • 0032904916 scopus 로고    scopus 로고
    • Principles and applications of methods for DNA-based typing of microbial organisms
    • Olive, D. M., and P. Bean. 1999. Principles and applications of methods for DNA-based typing of microbial organisms. J. Clin. Microbiol. 37:1661-1669.
    • (1999) J. Clin. Microbiol. , vol.37 , pp. 1661-1669
    • Olive, D.M.1    Bean, P.2
  • 30
    • 0036135012 scopus 로고    scopus 로고
    • Direct detection and characterization of Shiga toxigenic Escherichia coli by multiplex PCR for stx1, stx2, eae, ehxA, and saa
    • Paton, A. W., and J. C. Paton. 2002. Direct detection and characterization of Shiga toxigenic Escherichia coli by multiplex PCR for stx1, stx2, eae, ehxA, and saa. J. Clin. Microbiol. 40:271-274.
    • (2002) J. Clin. Microbiol. , vol.40 , pp. 271-274
    • Paton, A.W.1    Paton, J.C.2
  • 31
    • 0031848112 scopus 로고    scopus 로고
    • Pathogenesis and diagnosis of Shiga toxin-producing Escherichia coli infections
    • Paton, J. C., and A. W. Paton. 1998. Pathogenesis and diagnosis of Shiga toxin-producing Escherichia coli infections. Clin. Microbiol. Rev. 11:450-479.
    • (1998) Clin. Microbiol. Rev. , vol.11 , pp. 450-479
    • Paton, J.C.1    Paton, A.W.2
  • 35
    • 0035382473 scopus 로고    scopus 로고
    • Comparative evaluation of three commercial software packages for analysis of DNA polymorphism patterns
    • Rementeria, A., L. Gallego, G. Quindos, and J. Garaizar. 2001. Comparative evaluation of three commercial software packages for analysis of DNA polymorphism patterns. Clin. Microbiol. Infect. 7:331-336.
    • (2001) Clin. Microbiol. Infect. , vol.7 , pp. 331-336
    • Rementeria, A.1    Gallego, L.2    Quindos, G.3    Garaizar, J.4
  • 36
    • 0037608958 scopus 로고    scopus 로고
    • Escherichia coli O157:H7 Shiga toxin-encoding bacteriophages: Integrations, excisions, truncations, and evolutionary implications
    • Shaikh, N., and P. I. Tarr. 2003. Escherichia coli O157:H7 Shiga toxin-encoding bacteriophages: integrations, excisions, truncations, and evolutionary implications. J. Bacteriol. 185:3596-3605.
    • (2003) J. Bacteriol. , vol.185 , pp. 3596-3605
    • Shaikh, N.1    Tarr, P.I.2
  • 37
    • 0036718561 scopus 로고    scopus 로고
    • Genomic variability of O islands encoding tellurite resistance in enterohemorrhagic Escherichia coli O157:H7 isolates
    • Taylor, D. E., M. Rooker, M. Keelan, L. Ng, I. Martin, N. T. Perna, N. T. V. Burland, and F. R. Blattner. 2002. Genomic variability of O islands encoding tellurite resistance in enterohemorrhagic Escherichia coli O157:H7 isolates. J. Bacteriol. 184:4690-4698.
    • (2002) J. Bacteriol. , vol.184 , pp. 4690-4698
    • Taylor, D.E.1    Rooker, M.2    Keelan, M.3    Ng, L.4    Martin, I.5    Perna, N.T.6    Burland, N.T.V.7    Blattner, F.R.8
  • 38
    • 0029134774 scopus 로고
    • Interpreting chromosomal DNA restriction patterns produced by pulsed-field gel electrophoresis: Criteria for bacterial strain typing
    • Tenover, F. C., R. D. Arbeit, R. V. Goering, P. A. Mickelsen, B. E. Murray, D. H. Persing, and B. Swaminathan. 1995. Interpreting chromosomal DNA restriction patterns produced by pulsed-field gel electrophoresis: criteria for bacterial strain typing. J. Clin. Microbiol. 33:2233-2239.
    • (1995) J. Clin. Microbiol. , vol.33 , pp. 2233-2239
    • Tenover, F.C.1    Arbeit, R.D.2    Goering, R.V.3    Mickelsen, P.A.4    Murray, B.E.5    Persing, D.H.6    Swaminathan, B.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.