Phylogenetic evidence for the distinction of Saaremaa and Dobrava hantaviruses

Virology Journal

Volumn 2, Issue , 2005, Pages

  Sironen, Tarja ^a   Vaheri, Antti ^a   Plyusnin, Alexander ^a  

^a UNIVERSITY OF HELSINKI   (Finland)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CALCULATION; DOBRAVA VIRUS; GENE SEQUENCE; GENETIC ANALYSIS; HANTAVIRUS; MOLECULAR CLOCK; MONOPHYLY; NUCLEOTIDE SEQUENCE; PHYLOGENY; SAAREMAA VIRUS; STATISTICAL MODEL; VIRUS GENOME; VIRUS IDENTIFICATION; VIRUS STRAIN;

GENES, VIRAL; HANTAVIRUS; PHYLOGENY; SPECIES SPECIFICITY;

DOBRAVA-BELGRADE VIRUS; HANTAVIRUS; RODENTIA; SAAREMAA VIRUS;

EID: 29244440762     PISSN: 1743422X     EISSN: 1743422X     Source Type: Journal    
DOI: 10.1186/1743-422X-2-90     Document Type: Article

References (23)

1. Elliott RM, Bouloy M, Calisher CH, Goldbach R, Moyer JT, Nichol ST, Pettersson R, Plyusnin A, Schmaljohn CS: Family Bunyaviridae. In Virus taxonomy. VIIth report of the International Committee on Taxonomy of Viruses Edited by: van Regenmortel MHV, Fauquet CM, Bishop DHL, Carsten EB, Estes MK, Lemon SM, Maniloff J, Mayo MA, McGeoch DJ, Pringle CR, Wickner RB. San Diego: Academic Press; 2000:599-621.
2. Vapalahti O, Mustonen J, Lundkvist Å, Henttonen H, Plyusnin A, Vaheri A: Hantavirus infections in Europe. Lancet 2003, 3:653-661.
3. Nemirov K, Vapalahti O, Lundkvist Å, Vasilenko V, Golovljova I, Plyusnina A, Niemimaa J, Laakkonen J, Vaheri A, Plyusnin A: Isolation and characterization of Dobrava hantavirus carried by the striped field mouse (Apodemus agrarius) in Estonia. J Gen Virol 1999, 80:371-379.
4. Brus-Sjölander K, Golovljova I, Plyusnin A, Lundkvist Å: Serological divergence of Dobrava and Saaremaa hantaviruses: evidence for two distinct serotypes. J Epidemiol Infect 2002, 128:99-103.
5. Avsic-Zupanc T, Nemirov K, Petrovec M, Trilar T, Poljak M, Vaheri A, Plyusnin A: Genetic analysis of wild-type Dobrava hantavirus in Slovenia: co-existence of two distinct genetic lineages within the same natural focus. J Gen Virol 2002, 81:1747-1755.
6. Sibold C, Ulrich R, Labuda M, Lundkvist Å, Martens H, Schutt M, Gerke P, Leitmeyer K, Meisel H, Krüger DH: Dobrava hantavirus causes hemorrhagic fever with renal syndrome in central Europe and is carried by two different Apodemus mice species. J Med Virol 2001, 63:158-167.
7. Plyusnin A: Genetics of hantaviruses: implications to taxonomy (review). Arch Virol 2002, 147:665-682.
8. Nemirov K, Henttonen H, Vaheri A, Plyusnin A: Phylogenetic evidence for host switching in the evolution of hantaviruses carried by Apodemus mice. Virus Res 2002, 90:207-215. Erratum 2003, 92:125-126
9. Wang H, Yoshimatsu K, Ebihara H, Ogino M, Araki K, Kariwa H, Wang Z, Luo Z, Li D, Hang C, Arikawa J: Genetic diversity of hantaviruses isolated in china and characterization of novel hantaviruses isolated from Niviventer confucianus and Rattus rattus. Virology 2000, 278:332-345.
10. Klingström J, Hardestam J, Lundkvist Å: Dobrava, but not Saaremaa, hantavirus is lethal and induces nitric oxide production in suckling mice. Microbes and Infection 2005 in press.
11. Klempa B, Schmidt HA, Ulrich R, Kaluz S, Labuda M, Meisel H, Hjelle B, Krüger DH: Genetic interaction between distinct Dobrava hantavirus subtypes in Apodemus agrarius and A. flavicollis in nature. J Virol 2003, 77:804-809.
12. Plyusnin A, Vaheri A, Lundkvist Å: Genetic interaction between Dobrava and Saaremaa hantaviruses: now or millions of years ago? J Virol 2003, 77:7156-7157.
13. Plyusnin A, Krüger DH, Lundkvist Å: Hantavirus infections in Europe. (Review). Adv Vir Res 2001, 57:105-136.
14. Nemirov K, Andersen HK, Leirs H, Henttonen H, Vaheri A, Lundkvist Å, Plyusnin A: Saaremaa hantavirus in Denmark. J Clin Virol 2004, 30:254-257.
15. Schierup MH, Hein J: Recombination and the molecular clock. Mol Biol Evol 2000, 17:1578-1579.
16. Hillis DM, Bull JJ: An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis. Syst Biol 1993, 42:182-192.
17. Page RDM, Holmes EC: Inferring molecular phylogeny. In Molecular evolution: a phylogenetic approach UK: Blackwell Science Ltd; 1998:216-225.
18. Hall T: BioEdit. Biological sequence alignment editor for Windows. 1998 [http://www.mbio.ncsu.edu/BioEdit/bioedit.html]. North Carolina State University, NC, USA
19. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG: The CLUSTAL X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucl Acids Res 1997, 25:4876-4882.
20. Felsenstein J: PHYLIP - Phylogeny Inference Package (Version 3.2). 1989.
21. Strimmer K, von Haeseler A: Quartet puzzling: A quartet maximum likelihood method for reconstructing tree topologies. Mol Biol Evol 1996, 13:964-969.
22. Posada D, Crandall KA: MODELTEST: testing the model of DNA substitution. Bioninformatics 1998, 14:817-818.
23. Swofford DL: PAUP*. Phylogenetic Analysis Using Parsimony (*and Other Methods). Version 4. Sinauer Associates, Sunderland, Massachusetts; 2003.