Genetic structure and genetic relatedness of a hatchery stock of Senegal sole (Solea senegalensis) inferred by microsatellites

Aquaculture

Volumn 251, Issue 1, 2006, Pages 46-55

  Porta, Javier ^a   Porta, J Maria ^a   Martínez Rodríguez, Gonzalo ^b   Alvarez, M Carmen ^a  

^a UNIVERSITY OF MÁLAGA   (Spain)

^b INSTITUTO DE CIENCIAS MARINAS DE ANDALUCÍA   (Spain)

Author keywords

Genetic variability; Microsatellites; Relatedness; Solea senegalensis

Indexed keywords

BROOD STOCK; FISH CULTURE; FLATFISH; GENETIC STRUCTURE; POPULATION GENETICS; RELATEDNESS;

EURASIA; EUROPE; SOUTHERN EUROPE; SPAIN;

SOLEA SENEGALENSIS;

EID: 29244431973     PISSN: 00448486     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.aquaculture.2005.05.019     Document Type: Article

References (33)

1. M.S. Blouin, M. Parsons, V. Lacaille, and S. Lotz Use of microsatellite loci to classify individuals by relatedness Molecular Ecology 5 1996 393 401
2. Belkhir, K., Borsa, P., Chikhi, L., Raufaste, N., Bonhomme, F., 2003. GENETIX 4.04, logiciel sous Windows TM pour la génétique des populations. Laboratoire Génome, Populations, Interactions, CNRS UMR 5000, Université de Montpellier II, Montpellier, France (in French).
3. R.G. Danzmann Probmax: a computer program for assigning unknown parentage in pedigree analysis from known genotypic pools of parents and progeny Journal of Heredity 88 1997 33
4. M.T. Dinis, L. Ribeiro, F. Soares, and C. Sarasquete A review on the cultivation potential of Solea senegalensis in Spain and in Portugal Aquaculture 176 1999 27 38
5. C.S. Echt, P. May-Marquardt, M. Hseih, and R. Zahorchak Characterization of microsatellite markers in eastern white pine Genome 39 1996 1102 1108
6. A. Exadactylos, A.J. Geffen, and J.P. Thorpe Population structure of the Dover sole, Solea solea L. in a background of high gene flow Journal of Sea Research 40 1998 117 129
7. D.B. Goldstein, and C. Schlotterer Microsatellites: Evolution and Application 1999 Oxford Univ. Press New York
8. K.F. Goodnight, and D.C. Queller Computer software for performing likelihood tests of pedigree relationship using genetic markers Molecular Ecology 8 1999 1231 1234
9. J. Goudet FSTAT (vers. 1.2): a computer program to calculate F-statistics Journal of Heredity 86 1995 485 486
10. Goudet, J., 2001. FSTAT, a program to estimate and test gene diversities and fixation indices (Version 2.9.3). http://www.unil.ch/izea/softwares/fstat. html.
11. S.W. Guo, and E.A. Thompson Performing exact test of Hardy-Weinberg proportion for multiple alleles Biometrics 48 1992 361 372
12. D. Hedgecock, and F. Sly Genetic drift and effective population sizes of hatchery-propagated stocks of the Pacific oyster, Crassostrea gigas Aquaculture 88 1990 21 38
13. A. Iyengar, S. Piyapattanakorn, D.M. Stone, D.A. Heipel, B.R. Howell, S.M. Baynes, and N. Maclean Identification of microsatellite repeats in Turbot (Scophthalmus maximus) and Dover sole (Solea solea) using RAPD based technique; characterization of microsatellite markers in Dover sole Marine Biotechnology 2 2000 49 56
14. C.C. Li, and D.G. Horvitz Some methods of estimating the inbreeding coefficient American Journal of Human Genetics 5 1953 107 117
15. M. Lynch, and K. Ritland Estimation of the pairwise relatedness with molecular markers Genetics 152 1999 1753 1766
16. G. Martínez, E.M. Shaw, M. Carrillo, and S. Zanuy A protein salting-out method applied in genomic DNA isolation from fish whole blood BioTechniques 24 1988 238 239
17. E. Mathieu, M. Autem, M. Roux, and F. Bonhomme Epreuve de validation dans l'analyse de structures génétiques mulitvariées: comment tester l'équilibre panmictique? Revue de Statistique Appliquée 38 1990 47 66 (in French)
18. G.J. McDonald, R.G. Danzmann, and M.M. Ferguson Relatedness determination in the absence of pedigree information in three cultured strains of rainbow trout (Oncorhynchus mykiss) Aquaculture 233 2004 65 78
19. A. Mousadik, and R.J. Petit High level of genetic differentiation for allelic richness among populations of the argan tree [Argania spinosa (L.) Skeels] endemic to Morocco Theoretical and Applied Genetics 92 1996 832 839
20. A.T. Norris, D.G. Bradley, and E.P. Cunnigham Microsatellite genetic variation between and within farmed and wild Atlantic salmon (Salmo salar) populations Aquaculture 180 1999 247 264
21. A.T. Norris, D.G. Bradley, and E.P. Cunnigham Parentage and relatedness determination in farmed Atlantic salmon (Salmo salar) using microsatellite markers Aquaculture 182 2000 73 83
22. R. Perez-Enriquez, M. Takagi, and N. Taniguchi Genetic variability and pedigree tracing of a hatchery-reared stock of red sea bream (Pagrus major) used for stock enhancement, based on microsatellite DNA markers Aquaculture 173 1999 413 423
23. J. Porta, and M.C. Alvarez Development and characterization of microsatellite from Senegal sole (Solea senegalensis) Molecular Ecology Notes 4 2004 277 279
24. D.C. Queller, and K.F. Goodnight Estimating relatedness using genetics markers Evolution 43 1989 258 275
25. M. Raymond, and F. Rousst GENEPOP (version 1.2): population genetic software for exact test and ecumenicism Journal of Heredity 86 1995 248 249
26. W.R. Rice Analyzing tables of statistical tests Evolution 43 1989 223 225
27. M. Sekino, T. Sugaya, M. Hara, and N. Taniguchi Microsatellite relatedness estimator used for minimal kinship selection Paralichthys olivaceus Aquaculture 233 2004 163 172
28. D. Tautz Hypervariability of simple sequences as a general source for polymorphic DNA markers Nucleic Acids Research 17 1989 6463 6471
29. C.T. Van de Casteele, P. Galbusera, and E. Matthysen A comparison of microsatellite-based pairwise relatedness estimators Molecular Ecology 10 2001 1539 1549
30. J.L. Weber, and P.E. May Abundant class of human DNA polymorphism which can be typed using the polymerase chain reaction American Journal of Human Genetics 44 1989 388 396
31. B.S. Weir, and C.C. Cockerham Estimating F-statistics for the analysis of population structure Evolution 38 1984 1358 1370
32. S. Wright The interpretation of population structure by F-statistics with special regards to systems of mating Evolution 19 1965 395 420
33. J.M. Wright, and P. Bentzen Microsatellites: genetic markers for the future G.R. Carvalho T.J. Pitcher Molecular Genetics in Fisheries 1995 Chapman & Hall London 117 121