Identification of microsatellite repeats in turbot (Scophthalmus maximus) and dover sole (Solea solea) using a RAPD-based technique: Characterization of microsatellite markers in dover sole

Marine Biotechnology

Volumn 2, Issue 1, 2000, Pages 49-56

  Iyengar, Arati ^a   Piyapattanakorn, Sanit ^a   Stone, David M ^b   Heipel, Diana A ^b   Howell, Bari R ^b   Baynes, Stephen M ^b   Maclean, Norman ^a  

^a UNIVERSITY OF SOUTHAMPTON   (United Kingdom)

^b CENTRE FOR ENVIRONMENT   (United Kingdom)

Author keywords

Dover sole; Microsatellite markers; Microsatellite repeats; RAPD; Turbot

Indexed keywords

ALLOENZYME; DNA POLYMORPHISM; GENE LOCUS; HETEROZYGOSITY; MICROSATELLITE DNA; RANDOM AMPLIFIED POLYMORPHIC DNA; REPETITIVE DNA;

BIOTECHNOLOGY; FLATFISH; GENETIC MARKER;

PLEURONECTIFORMES; SCOPHTHALMUS MAXIMUS; SOLEA SOLEA;

EID: 0034082049     PISSN: 14362228     EISSN: None     Source Type: Journal    
DOI: 10.1007/s101269900007     Document Type: Article

References (32)

1. Beacham, T.D., and Wood. C.C. (1999). Application of microsatellite DNA variation to estimation of stock composition and escapement of Nass River sockeye salmon (Oncorhynchus nerka). Can J Fish Aquat Sci 56:297-310.
2. Beckman, J.S., and Weber, J.L. (1992). Survey of human and rat microsatellites. Genomics 12:627-631.
3. Bouza, C., Sánchez, L., and Martínez, P. (1997). Gene diversity analysis in natural populations and cultured stocks of turbot (Scophthalmus maximus L.) Anim Genet 28:28-36.
4. Brooker, A.L., Cook, D., Bentzen. P., Wright, J.M., and Doyle, R.W. (1994). Organization of microsatellites differs between mammals and cold-water teleost fishes. Can J Fish Aquat Sci 51:1959-1966.
5. Carvalho, G.R., and Hauser, L. (1998). Advances in molecular analysis of fish population structure. Ital J Zool 65:21-33.
6. Chenuil, A., Desmarais, E., Pouyaud, L., and Berrebi, P. (1997). Does polyploidy lead to fewer and shorter microsatellites in Barbus (Teleostei: Cyprinidae)? Mol Ecol 6:169-178.
7. Coughlan, J., Imsland, A.K., Galvin, P.T., Fitzgerald, R.D., Naevdal, G., and Cross, T.F. (1998). Microsatellite DNA variation in wild populations and farmed strains of turbot from Ireland and Norway: a preliminary study. J Fish Biol 52:916-922.
8. Eknath, A.E., Tayamem, M.M., Palada-de Vera, M.S., Danting, J.C., and Reyes, R.A. (1993). Genetic improvement of farmed tilapias: the growth performance of eight strains of Oreochromis niloticus tested in different farmed environments. Aquaculture 111: 171-188.
9. Ender, A., Schwenk, K., Stadler, T., Streit, B., and Schierwater, B. (1996). RAPD identification of microsatellites in Daphnia. Mol Ecol 5:437-441.
10. Estoup, A., Rousset, F., Michalakis, Y., Cornuet, J.-M., Adriamanga, M., and Guyomard, R. (1998a). Comparative analysis of microsatellite and allozyme markers: a case study investigating microgeographic differentiation in brown trout (Salmo trutta). Mol Ecol 7:339-353.
11. Estoup, A., Gharbi, K., SanCristobal, M., Chevalet, C., Haffray, P., and Guyomard, R. (1998b). Parentage assessment using microsatellites in turbot (Scophthalmus maximus) and rainbow trout (Oncorhynchus mykiss) hatchery populations. Can J Fish Aquat Sci 55:715-725.
12. Estoup, A., Presa, P., Krieg, F., Vaiman, D., and Guyomard, R. (1993). (CT)n and (GT)n microsatellites: a new class of genetic markers for Salmo trutta L. (brown trout). Heredity 71:488-496.
13. Exadactylos, A., Geffen, A.J., and Thorpe, J.P. (1998). Population structure of the Dover sole, Solea solea L., in a background of high gene flow. J Sea Res 40:117-129.
14. Herbinger, C.M., Oreilly, P.T., Doyle, R.W., Wright, J.M., and O'Flynn, F. (1999). Early growth performance of Atlantic salmon full-sib families reared in single family tanks versus in mixed family tanks. Aquaculture 173:105-116.
15. Howell, B.R. (1997). A re-appraisal of the potential of the sole, Solea solea (L.) for commercial cultivation. Aquaculture 155:355-365.
16. Iyengar, A., Piyapaltanakorn, S., Heipel, D.A., Stone, D.M., Howell, B.R., Child, A.R., and Maclean, N. A suite of highly polymorphic microsatellite markers in turbot (Scopthalmus maximus L.) with potential for use across several flatfish species. Mol Ecol, in press.
17. Kocher, T.D., Lee, W.J., Sobolewska, H., Penman, D.J., and McAndrew, B. (1998). A genetic linkage map of a cichlid fish, the tilapia (Oreochromis niloticus). Genetics 148:1225-1232.
18. Lundin, M., Mikkelsen, B., Moran, P., Martinez, J.L., and Syed, M. (1999). Cosmid clones from Atlantic salmon: physical genome mapping. Aquaculture 173:59-64.
19. Magnuson, V.L., Ally, D.S., Nylund, S.J., Karanjawala, Z.E., Rayman, J.B., Knapp, J.I., Lowe, A.L., Ghosh, A., and Collins, F.S. (1996). Substrate nucleotide-determined non-templated addition of adenine by Taq DNA polymerase: implications for PCR-based genotyping and cloning. Biotechniques 21:700-709.
20. Miller, L.M., and Kapuscinski, A.R. (1996). Microsatellite DNA markers reveal new levels of genetic variation in Northern pike. Trans Am Fish Soc 125:971-977.
21. Mjolnerod, I.B., Refseth, U.H., Karlsen, E., Balstad, T., Jakobsen, K.S., and Hindar, K. (1997). Genetic differences between two wild and one farmed population of Atlantic salmon (Salmo salar) revealed by three classes of genetic markers. Hereditas 127:239-248.
22. O'Connell, M., and Wright, J.M. (1997). Microsatellite DNA in fishes. Rev Fish Biol Fisheries 7:331-363.
23. PerezEnriquez, R., and Taniguchi, N. (1999). Genetic structure of red sea bream (Pagrus major) population off Japan and the Southwest Pacific, using microsatellite DNA markers. Fisheries Sci 65: 23-30.
24. Reilly, A., Elliot, N.G., Grewe, P.M., Clabby, C., Powell, R., and Ward, R.D. (1999). Genetic differentiation between Tasmanian cultured Atlantic salmon (Salmo salar L.) and their ancestral Canadian population: comparison of microsatellite DNA and allozyme and mitochondrial DNA variation. Aquaculture 173:459-469.
25. Ruzzante, D.E., Taggart, C.T., and Cook, D. (1998). A nuclear DNA basis for shelf-and bank-scale population structure in northwest Atlantic cod (Gadus morhua): Labrador to Georges Bank. Mol Ecol 7:1663-1680.
26. Schug, M.D., Wetterstrand, K.A., Gaudette, M.S., Lim, R.H., Hutter, C.M., and Aquadro, C.F. (1998). The distribution and frequency of microsatellite loci in Drosophila melanogaster. Mol Ecol 7:57-70.
27. Slettan, A., Olsaker, I., and Lie, Ø. (1993). Isolation and characterization of variable (GT)n repetitive sequences from Atlantic salmon, Salmo salar L. Anim Genet 24:195-197.
28. Slettan, A., Olsaker, I., and Lie, Ø. (1997). Segregation studies and linkage analysis of Atlantic salmon microsatellites using haploid genetics. Heredity 78:620-627.
29. Small, M.P., Withler, R.E., and Beacham, T.D. (1998). Population structure and stock identification of British Columbia coho salmon, Oncorhynchus kisutch, based on microsatellite DNA variation. Fish Bull 96:843-858.
30. Streelman, J.T., Zardoya, R., Meyer, A., and Karl, S.A. (1998). Multilocus phylogeny of cichlid fishes (Pisces:Perciformes): evolutionary comparison of microsatellite and single-copy nuclear loci. Mol Biol Evol 15:798-808.
31. Volckaert, F.A.M., and Hellemans, B. (1999). Survival, growth and selection in a communally reared multifactorial cross of African catfish (Clarias gariepinus). Aquaculture 171:49-64.
32. Zane, L., Nelson, W.S., Jones, A.G., and Avise, J.C. (1999). Microsatellite assessment of multiple paternity in natural populations of a live bearing fish, Gambusia holbrooki. J Evol Biol 12:61-69.