Poly(glycidyl methacrylate/divinylbenzene)-IDA-FeIII in phosphoproteomics

Journal of Proteome Research

Volumn 4, Issue 6, 2005, Pages 2312-2319

  Aprilita, Nurul H ^a,c   Huck, Christian W ^a   Bakry, Rania ^a   Feuerstein, Isabel ^a   Stecher, Guenther ^a   Morandell, Sandra ^b   Huang, Hong Lei ^b   Stasyk, Taras ^b   Huber, Lukas A ^b   Bonn, Guenther K ^a  

^a UNIVERSITY OF INNSBRUCK   (Austria)

^b INNSBRUCK MEDICAL UNIVERSITY   (Austria)

^c GADJAH MADA UNIVERSITY   (Indonesia)

Author keywords

Glycidyl methacrylate divinylbenze; GST ERK2; Immobilized metal affinity chromatography; Mass spectrometry; Phosphopeptides; Solid phase extraction

Indexed keywords

ACETIC ACID DERIVATIVE; AMINO ACID; BETA CASEIN; DIVINYLBENZENE; GLUTATHIONE TRANSFERASE; GLYCINE DERIVATIVE; IRON COMPLEX; MITOGEN ACTIVATED PROTEIN KINASE 1; MYOGLOBIN; PHOSPHOPEPTIDE; POLYMETHACRYLIC ACID DERIVATIVE; SERINE; SYNTHETIC PEPTIDE; THREONINE; TRYPSIN; TYROSINE;

AFFINITY CHROMATOGRAPHY; ARTICLE; ESTERIFICATION; MASS SPECTROMETRY; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; PEPTIDE SYNTHESIS; POLYMERIZATION; PRIORITY JOURNAL; PROTEOMICS; SCANNING ELECTRON MICROSCOPY; SOLID PHASE EXTRACTION; WESTERN BLOTTING;

AMINO ACID SEQUENCE; CASEINS; CHROMATOGRAPHY, AFFINITY; EPOXY COMPOUNDS; GLUTATHIONE TRANSFERASE; IMINO ACIDS; IRON; MASS SPECTROMETRY; METHACRYLATES; MICROSCOPY, ELECTRON; MITOGEN-ACTIVATED PROTEIN KINASE 1; MODELS, CHEMICAL; MOLECULAR SEQUENCE DATA; MYOGLOBIN; PEPTIDES; PHOSPHOPEPTIDES; PHOSPHOPROTEINS; PHOSPHORYLATION; POLYMERS; PROTEOME; PROTEOMICS; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION; TIME FACTORS; TRYPSIN; VINYL COMPOUNDS;

EID: 29144518428     PISSN: 15353893     EISSN: None     Source Type: Journal    
DOI: 10.1021/pr050224m     Document Type: Article

References (48)

1. Cao, P.; Stults, J. T. Phosphopeptide analysis by on-line immobilized metal-ion affinity chromatography-capillary electrophoresis-electrospray ionization mass spectrometry. J. Chromatogr. A 1999, 853, 225-235.
2. Cohen, P. The origins of protein phosphorylation. Nat. Cell. Biol. 2002, 4, E127-E130.
3. Sulkowski, E. Purification of proteins by IMAC. Trends Biotechnol. 1985, 3, 1-7.
4. Dass, C. Analysis of phosphorylated proteins by mass spectrometry. Appl. Spectrosc. Rev. 2000, 35, 95-128.
5. Neubar, G.; Mann, M. Mapping of Phosphorylation Sites of Gel-Isolated Proteins by Nanoelectrospray Tandem Mass Spectrometry: Potentials and Limitations. Anal. Chem. 1999, 71, 235-242.
6. Annan, R. S.; Huddleston, M. J.; et al. A Multidimensional Electrospray MS-Based Approach to Phosphopeptide Mapping. Anal. Chem. 2001, 73, 393-404.
7. Raska, C. S.; Parker, C. E.; et al. Direct MALDI-MS/MS of Phosphopeptides Affinity-Bound to Immobilized Metal Ion Affinity Chromatography Beads. Anal. Chem. 2002, 74, 3429-3433.
8. Hop, C. E. C.; Bakhtiar, R. An introduction to electrospray ionization and matrix-assisted laser desorption/ionization mass spectrometry: essential tools in a modern biotechnology environment. Biospectroscopy 1997, 3, 259-280.
9. Carr, S. A.; Hemling, M. E.; et al. Integration of mass spectrometry in analytical biotechnology. Anal. Chem. 1991, 63, 2804-2824.
10. Hart, S. R.; Waterfield, M. D.; et al. Factors governing the solubilization of phosphopeptides retained on ferric NTA IMAC beads and their analysis by MALDI TOFMS. J. Am. Soc. Mass Spectrom. 2002, 13, 1042-1051.
11. Posewitz, M. C.; Tempst, P. Immobilized Gallium(III) Affinity Chromatography of Phosphopeptides. Anal. Chem. 1999, 71, 2883-2892.
12. Li, S.; Dass, C. Iron(III)-Immobilized Metal Ion Affinity Chromatography and Mass Spectrometry for the Purification and Characterization of Synthetic Phosphopeptides. Anal. Biochem. 1999, 270, 9-14.
13. Li, S.; Dass, C. Detection of phosphopeptides in bovine adrenal medulla by using iron (III) immobilized-affinity chromatography and mass spectrometry. EJMS. 1999, 5, 279-284.
14. Zhou, W.; Merrick, B. A.; et al. Detection and sequencing of phosphopeptides affinity bound to immobilized metal ion beads by matrix-assisted laser desorption/ionization mass spectrometry. J. Am. Soc. Mass Spectrom. 2000, 11, 273-282.
15. Chaga, G. S. Twenty-five years of immobilized metal ion affinity Chromatography: past, present and future. J. Biochem. Biophys. Methods. 2001, 49, 313-334.
16. Stensballe, A.; Andersen, S.; et al. Characterization of phosphoproteins from electrophoretic gels by nanoscale Fe(III) affinity Chromatography with off-line mass spectrometry analysis. Proteomics 2001, 1, 207-222.
17. Ficarro, S. B.; McCleland, M. L.; et al. Phosphoproteome analysis by mass spectrometry and its application to Saccharomyces cerevisiae. Nat. Biotechnol. 2002, 20, 301-305.
18. Bonn, G. K.; Kalghatgi, K.; et al. Rapid metal-interaction chromatography of proteins and peptides on micropellicular sorbents. Chromatographia 1990, 30, 484-488.
19. Scanff, P.; Yvon, M.; et al. Immobilized iron affinity chromatographic isolation of phosphopeptides. J. Chromatogr. 1991, 539, 425-432.
20. Thompson, A. J.; Hart, S. R.; et al. Characterization of protein phosphorylation by mass spectrometry using immobilized metal ion affinity chromatography with on-resin β-elimination and Michael addition. Anal. Chem. 2003, 75, 3232-3243.
21. McLachin, D. T.; Chait, B. T. Analysis of phosphorylated proteins and peptides by mass spectrometry. Curr. Opin. Biotechnol. 2001, 5, 591-602.
22. Feuerstein, I.; Morandell, S.; et al. Phosphoproteomic Analysis using Immobilized Metal Ion Affinity Chromatography on the Basis of Cellulose Powder. Proteomics, 2005, 5 (1), 46-54.
23. Porath, J.; Carlsson, J.; et al. Metal chelate affinity chromatography, a new approach to protein fractionation. Nature 1975, 258, 598-599.
24. Muszynska, G.; Andersson, L.; et al. Selective adsorption of phosphoproteins on gel-immobilized ferric chelate. Biochemistry 1986, 25, 6850-6853.
25. Wong, J. W.; Albright, R. L.; et al. Immobilized metal ion affinity Chromatography (IMAC)-chemistry and bioseparation applications. Sepn. Purif. Methods 1991, 20, 49-106.
26. Porath, J. Immobilized metal ion affinity chromatography. Prot. Expression. Purif. 1992, 3, 263-281.
27. Muszynska, G.; Dobrowolska, G.; et al. Model studies on iron(III) ion affinity chromatography. II. Interaction of immobilized iron(III) ions with phosphorylated amino acids, peptides and proteins. J. Chromatogr. 1992, 604, 19-28.
28. Zachariou, M.; Traverso, I.; et al. High-performance liquid chromatography of amino acids, peptides and proteins. CXXXI. O-Phosphoserine as a new chelating ligand for use with hard Lewis metal ions in the immobilized-metal affinity chromatography of proteins. J. Chromatogr. 1993, 646, 107-120.
29. El-Rassi, Z.; Horváth, C. Metal chelate-interaction chromatography of proteins with iminodiacetic acid-bonded stationary phases on silica support. J. Chromatogr. 1986, 359, 241-253.
30. A. Figueroa, C. Corradini, B. Feibush, B. L. Karger, J. Chromatogr. 1986, 371, 335-352.
31. Toomik, R.; Toomik, P. Preparation of ferric adsorbent paper and its interaction with phosphate-containing biomolecules. Prepr. Biochem. 1992, 22, 183-197.
32. Li, Y.; Lingyun, J.; et al. Affinity chromatography of yeast alcohol dehydrogenase using immobilized monochlorotriazine colourless compounds. Sci. China (Series B) 1998, 41, 596-605.
33. Ueda, E. K. M.; Gout, P. W.; et al. Current and prospective applications of metal ion-protein binding. J. Chromatogr. A 2003, 988, 1-23.
34. Shoemaker, M. T.; Haley, B. E. Identification of a guanine binding domain peptide of the GTP binding site of glutamate dehydrogenase: isolation with metal-chelate affinity chromatography. Biochemistry. 1993, 32, 1883-1890.
35. Ficarro, S.; Chertihin, O.; et al. Phosphoproteome Analysis of Capacitated Human Sperm. J. Biol. Chem. 2003, 278, 11579-11589.
36. Holmes, L. D.; Schiller, M. R. Immobilized iron(III) metal affinity chromatography for the separation of phosphorylated macromolecules: ligands and applications. J. Liq. Chrom., Relat. Technol. 1997, 20, 123-142.
37. Kastner, M. In Protein Liquid Chromatography, Kastner, M., Ed.; Elsevier. Amsterdam, 2000; pp 301-383.
38. Majors, R. E. New designs and formats in solid-phase extraction sample preparation. LC-GC Eur. 2001, 14, 746-751.
39. Huck, C. W.; Bonn, G. K. Recent developments in polymer-based sorbents for solid-phase extraction. J. Chromatogr. A 2000, 885, 51-72.
40. Bratt, C.; Lindberg, C.; et al. Restricted access chromatographic sample preparation of low mass proteins expressed in human fibroblast cells for proteomics analysis. J. Chromatogr. A 2001, 909, 279-288.
41. Bonneil, E.; Li, J.; et al. Integration of solid-phase extraction membranes for sample multiplexing: application to rapid protein identification from gel-isolated protein extracts. Electrophoresis 2002, 23, 3589-3598.
42. Pang, J. X.;, Ginanni, N.; et al. Biomarker discovery in urine by proteomics. J. Proteome. Res. 2002, 1, 161-169.
43. Janini, G. M.; Conrads, T. P.; et al. Development of a two-dimensional protein-peptide separation protocol for comprehensive proteome measurements. J. Chromatogr. B 2003, 787, 43-51.
44. Shen, Y.; Toli, N.; et al. Ultrasensitive Proteomics Using High-Efficiency On-Line Micro-SPE-NanoLC-NanoESI MS and MS/ MS. Anal. Chem. 2004, 76, 144-154.
45. Zhang, S.; Huang, X.; et al. Preparation of monodisperse porous polymethacrylate microspheres and their application in the capillary electrochromatography of macrolide antibiotics. J. Chromatogr. A 2002, 948, 193-201.
46. Annan, R. S.; Carr, S. A. Phosphopeptide Analysis by Matrix-Assisted Laser Desorption Time-of-Flight Mass Spectrometry. Anal. Chem. 1996, 68, 3413-3421.
47. Trojer, L.; Stecher, G.; et al. Characterisation and evaluation of metal-loaded iminodiacetic acid-silica of different porosity for the selective enrichment of phosphopeptides. J. Chromatogr. A 2005, 1079, 197-207.
48. Cobb, M. H.; Goldsmith, E. J. How MAP kinases are regulated. J. Biol. Chem 1995, 270, 14843-14846.