Structures and homology modeling of chicken major histocompatibility complex protein class I (BF2 and β2m)

Molecular Immunology

Volumn 43, Issue 7, 2006, Pages 1040-1046

  Yan, Ruo Qian ^a   Li, Xin Sheng ^a   Yang, Tian Yao ^a   Xia, Chun ^a  

^a CHINA AGRICULTURAL UNIVERSITY   (China)

Author keywords

2m; BF2; Chicken; Homology modeling; Structure

Indexed keywords

BETA 2 MICROGLOBULIN; BLOOD CLOTTING FACTOR 10A; HYBRID PROTEIN; MAJOR HISTOCOMPATIBILITY ANTIGEN CLASS 1; MONOMER; PEPTIDE; PROTEIN BF 2; PROTEINASE; UNCLASSIFIED DRUG;

ALPHA HELIX; AMINO ACID SEQUENCE; ANTIGEN STRUCTURE; ARTICLE; BETA SHEET; CIRCULAR DICHROISM; CONTROLLED STUDY; ESCHERICHIA COLI; GENE EXPRESSION; GENE LOCUS; MAJOR HISTOCOMPATIBILITY COMPLEX; MOLECULAR MODEL; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN CONFORMATION; PROTEIN DEGRADATION; PROTEIN PURIFICATION; SEQUENCE HOMOLOGY; SOLUBILITY;

ANIMALS; BLOTTING, WESTERN; CHICKENS; ELECTROPHORESIS, POLYACRYLAMIDE GEL; HISTOCOMPATIBILITY ANTIGENS CLASS I; MAJOR HISTOCOMPATIBILITY COMPLEX; MODELS, MOLECULAR; PROTEIN CONFORMATION; PROTEIN STRUCTURE, SECONDARY; RECOMBINANT PROTEINS; SOLUBILITY; STRUCTURAL HOMOLOGY, PROTEIN;

ESCHERICHIA COLI;

EID: 29144470114     PISSN: 01615890     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.molimm.2005.07.007     Document Type: Article

References (28)

1. J.D. Altman, P.A. Moss, P.J. Goulder, D.H. Barouch, M.G. McHeyzer-Williams, J.I. Bell, A.J. McMichael, and M.M. Davis Phenotypic analysis of antigen-specific T lymphocytes Science 274 1996 94 96
2. P.J. Bjorkman, M.A. Saper, B. Samraoui, W.S. Bennett, J.L. Strominger, and D.C. Wiley Structure of the human class I histocompatibility antigen, HLA-A2 Nature 329 1987 506 512
3. M.M. Bradford A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding Anal. Biochem. 72 1976 248 254
4. W.E. Briles, R.M. Goto, C. Auffray, and M.M. Miller A polymorphic system related to but genetically independent of the chicken major histocompatibility complex Immunogenetics 37 1993 408 414
5. Y.H. Chen, J.T. Yang, and H.M. Martinez Determination of the secondary structures of proteins by circular dichroism and optical rotatory dispersion Biochemistry 11 1972 4120 4131
6. R.W. Collins Human MHC class I chain related (MIC) genes: their biological function and relevance to disease and transplantation Eur. J. Immunogenet. 31 2004 105 114
7. G.F. Gao, J. Tormo, U.C. Gerth, J.R. Wyer, A.J. McMichael, D.I. Stuart, J.I. Bell, E.Y. Jones, and B.K. Jakobsen Crystal structure of the complex between human CD8alpha (alpha) and HLA-A2 Nature 387 1997 630 634
8. J. Garnier, J.F. Gibrat, and B. Robson GOR method for predicting protein secondary structure from amino acid sequence Methods Enzymol. 266 1996 540 553
9. F. Godeau, I.F. Luescher, D.M. Ojcius, C. Saucier, E. Mottez, L. Cabanie, and P. Kourilsky Purification and ligand binding of a soluble class I major histocompatibility complex molecule consisting of the first three domains of H-2Kd fused to beta 2-microglobulin expressed in the baculovirus-insect cell system J. Biol. Chem. 267 1992 24223 24229
10. J. Hakenberg, A.K. Nussbaum, H. Schild, H.G. Rammensee, C. Kuttler, H.G. Holzhutter, P.M. Kloetzel, S.H. Kaufmann, and H.J. Mollenkopf MAPPP: MHC class I antigenic peptide processing prediction Appl. Bioinform. 2 2003 155 158
11. J. Hammer New methods to predict MHC-binding sequences within protein antigens Curr. Opin. Immunol. 7 1995 263 269
12. J. Kaufman, R. Andersen, D. Avila, J. Engberg, J. Lambris, J. Salomonsen, K. Welinder, and K. Skjodt Different features of the MHC class I heterodimer have evolved at different rates. Chicken B-F and beta 2-microglobulin sequences reveal invariant surface residues J. Immunol. 148 1992 1532 1546
13. J. Kaufman, S. Milne, T.W. Gobel, B.A. Walker, J.P. Jacob, C. Auffray, R. Zoorob, and S. Beck The chicken B locus is a minimal essential major histocompatibility complex Nature 401 1999 923 925
14. M. Krogsgaard, Q.J. Li, C. Sumen, J.B. Huppa, M. Huse, and M.M. Davis Agonist/endogenous peptide-MHC heterodimers drive T cell activation and sensitivity Nature 434 2005 238 243
15. D.R. Madden The three-dimensional structure of peptide-MHC complexes Annu. Rev. Immunol. 13 1995 587 622
16. M.M. Miller, L.D. Bacon, K. Hala, H.D. Hunt, S.J. Ewald, J. Kaufman, R. Zoorob, and W.E. Briles Nomenclature for the chicken major histocompatibility (B and Y) complex Immunogenetics 56 2004 261 279
17. M.M. Miller, R. Goto, A. Bernot, R. Zoorob, C. Auffray, N. Bumstead, and W.E. Briles Two Mhc class I and two Mhc class II genes map to the chicken Rfp-Y system outside the B complex Proc. Natl. Acad. Sci. U.S.A. 91 1994 4397 4401
18. NEB, 1991-2001. pMAL Protein Fusion and Purification System Instruction Manual. New England Biolads Inc., Version 5.01, pp. 1-33.
19. M.B. Oleksiewicz, B. Kristensen, A.S. Ladekjaer-Mikkelsen, and J. Nielsen Development of a rapid in vitro protein refolding assay which discriminates between peptide-bound and peptide-free forms of recombinant porcine major histocompatibility class I complex (SLA-I) Vet. Immunol. Immunopathol. 86 2002 55 77
20. P. Parham Function and polymorphism of human leukocyte antigen-A-C molecules Am. J. Med. 85 1988 2 5
21. K.C. Parker, M. Shields, M. DiBrino, A. Brooks, and J.E. Coligan Peptide binding to MHC class I molecules: implications for antigenic peptide prediction Immunol. Res. 14 1995 34 57
22. M.A. Saper, P.J. Bjorkman, and D.C. Wiley Refined structure of the human histocompatibility antigen HLA-A2 at 2.6 A resolution J. Mol. Biol. 219 1991 277 319
23. J.C. Solheim Class I MHC molecules: assembly and antigen presentation Immunol. Rev. 172 1999 11 19
24. J.L. Strominger Human histocompatibility proteins Immunol. Rev. 185 2002 69 77
25. C. Sylvester-Hvid, L.L. Nielsen, N.J. Hansen, L.O. Pedersen, and S. Buus A single-chain fusion molecule consisting of peptide, major histocompatibility gene complex class I heavy chain and beta2-microglobulin can fold partially correctly, but binds peptide inefficiently Scand. J. Immunol. 50 1999 355 362
26. C. Xia, W. Dan, W. Wen-Xue, W. Jian-Qing, W. Li, Y. Tian-Yao, W. Qin, and N. Yi-Bao Cloning and expression of interferon-alpha/gamma from a domestic porcine breed and its effect on classical swine fever virus Vet. Immunol. Immunopathol. 104 2005 81 89
27. Yan, R.Q., Li, X.S., Yang, T.Y., Xia C. Characterization of BF2 and b2m in three Chinese chicken lines. Vet. Immunol. Immunopathol., in press.
28. B. Zhao, V.S. Mathura, G. Rajaseger, S. Moochhala, M.K. Sakharkar, and P. Kangueane A novel MHCp binding prediction model Hum. Immunol. 64 2003 1123 1143