Unbiased selection of localization elements reveals cis-acting determinants of mRNA bud localization in Saccharomyces cerevisiae

Proceedings of the National Academy of Sciences of the United States of America

Volumn 102, Issue 50, 2005, Pages 18005-18010

  Jambhekar, Ashwini ^a   McDermott, Kimberly ^c   Sorber, Katherine ^a   Shepard, Kelly A ^a   Vale, Ronald D ^a,b   Takizawa, Peter A ^c   DeRisi, Joseph L ^a,b  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c YALE UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

Nonhomologous random recombination; RNA zipcode; Three hybrid selection

Indexed keywords

CIS ACTING ELEMENT; DINUCLEOTIDE; HEMAGGLUTININ; MESSENGER RNA; PROTEIN MYO4P; PROTEIN SHE2P; PROTEIN SHE3P; RNA BINDING PROTEIN; UNCLASSIFIED DRUG;

ARTICLE; BINDING SITE; BUD; CONTROLLED STUDY; DINUCLEOTIDE REPEAT; NONHUMAN; PRIORITY JOURNAL; PROTEIN MOTIF; PROTEIN RNA BINDING; PROTEIN SECONDARY STRUCTURE; RNA RECOMBINATION; RNA STRUCTURE; RNA TRANSPORT; SACCHAROMYCES CEREVISIAE;

BASE PAIRING; DINUCLEOTIDE REPEATS; ELECTROPHORETIC MOBILITY SHIFT ASSAY; GENE LIBRARY; GREEN FLUORESCENT PROTEINS; MULTIPROTEIN COMPLEXES; MYOSIN HEAVY CHAINS; MYOSIN TYPE V; RNA TRANSPORT; RNA, MESSENGER; RNA-BINDING PROTEINS; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS; TWO-HYBRID SYSTEM TECHNIQUES;

SACCHAROMYCES CEREVISIAE;

EID: 29144464175     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0509229102     Document Type: Article

References (25)

1. Oleynikov, Y. & Singer, R. H. (1998) Trends Cell Biol. 8, 381-383.
2. Betley, J. N, Frith, M. C., Graber, J. H., Choo, S. & Deshler, J. O. (2002) Curr. Biol. 12, 1756-1761.
3. Kim-Ha, J., Webster, P. J., Smith, J. L. & Macdonald, P. M. (1993) Development (Cambridge, U.K.) 119, 169-178.
4. Macdonald, P. M. & Kerr, K. (1998) Mol. Cell Biol. 18, 3788-3795.
5. Gautreau, D., Cote, C. A. & Mowry, K. L. (1997) Development (Cambridge, U.K.) 124, 5013-5020.
6. Shepard, K. A., Gerber, A. P., Jambhekar, A., Takizawa, P. A., Brown, P. O., Herschlag, D., DeRisi, J. L. & Vale, R. D. (2003) Proc. Natl. Acad. Sci. USA 100, 11429-11434.
7. Bohl, F., Kruse, C., Frank, A., Ferring, D. & Jansen, R. P. (2000) EMBO J. 19, 5514-5524.
8. Takizawa, P. A. & Vale, R. D. (2000) Proc. Natl. Acad. Sci. USA 97, 5273-5278.
9. Long, R. M., Gu, W., Lorimer, E., Singer, R. H. & Chartrand, P. (2000) EMBO J. 19, 6592-6601.
10. Gonzalez, I., Buonomo, S. B., Nasmyth, K. & von Ahsen, U. (1999) Curr. Biol. 9, 337-340.
11. Chartrand, P., Meng, X. H., Singer, R. H. & Long, R. M. (1999) Curr. Biol. 9, 333-336.
12. Olivier, C., Poirier, G., Gendron, P., Boisgontier, A., Major, F. & Chartrand, P. (2005) Mol. Cell Biol. 25, 4752-4766.
13. Bittker, J. A., Le, B. V. & Liu, D. R. (2002) Nat. Biotechnol. 20, 1024-1029.
14. Bernstein, D. S., Buter, N., Stumpf, C. & Wickens, M. (2002) Methods 26, 123-141.
15. SenGupta, D. J., Zhang, B., Kraemer, B., Pochart, P., Fields, S. & Wickens, M. (1996) Proc. Natl. Acad. Sci. USA 93, 8496-8501.
16. Longtine, M. S., McKenzie, A., 3rd, Demarini, D. J., Shah, N. G., Wach, A., Brachat, A., Philippsen, P. & Pringle, J. R. (1998) Yeast 14, 953-961.
17. Gietz, R. D. & Woods, R. A. (2002) Methods Enzymol. 350, 87-96.
18. Mathews, D. H., Sabina, J., Zuker, M. & Turner, D. H. (1999) J. Mol. Biol. 288, 911-940.
19. Zuker, M. (2003) Nucleic Acids Res. 31, 3406-3415.
20. Bailey, T. L. & Elkan, C. (1994) Proc. Int. Conf. Intell. Syst. Mol. Biol. 2, 28-36.
21. Kruse, C., Jaedicke, A., Beaudouin, J., Bohl, F., Ferring, D., Guttler, T., Ellenberg, J. & Jansen, R. P. (2002) J. Cell Biol. 159, 971-982.
22. Crooks, G. E., Hon, G., Chandonia, J. M. & Brenner, S. E. (2004) Genome Res. 14, 1188-1190.
23. Schneider, T. D. & Stephens, R. M. (1990) Nucleic Acids Res. 18, 6097-6100.
24. Hook, B., Bernstein, D., Zhang, B. & Wickens, M. (2005) RNA 11, 227-233.
25. Crucs, S., Chatterjee, S. & Gavis, E. R. (2000) Mol. Cell 5, 457-467.