-
1
-
-
0036382768
-
Modeling a minimal ribosome based on comparative sequence analysis
-
J.A. Mears, J.J. Cannone, S.M. Stagg, R.R. Gutell, R.K. Agrawal, and S.C. Harvey Modeling a minimal ribosome based on comparative sequence analysis J. Mol. Biol. 321 2002 215 234
-
(2002)
J. Mol. Biol.
, vol.321
, pp. 215-234
-
-
Mears, J.A.1
Cannone, J.J.2
Stagg, S.M.3
Gutell, R.R.4
Agrawal, R.K.5
Harvey, S.C.6
-
2
-
-
0036830120
-
Ribosomal proteins at the stalk region modulate functional rRNA structures in the GTPase center
-
T. Uchiumi, S. Honma, Y. Endo, and A. Hachimori Ribosomal proteins at the stalk region modulate functional rRNA structures in the GTPase center J. Biol. Chem. 277 2002 41401 41409
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 41401-41409
-
-
Uchiumi, T.1
Honma, S.2
Endo, Y.3
Hachimori, A.4
-
3
-
-
0028953727
-
The sarcin/ricin loop, a modular RNA
-
A.A. Szewczak, and P.B. Moore The sarcin/ricin loop, a modular RNA J. Mol. Biol. 247 1995 81 98
-
(1995)
J. Mol. Biol.
, vol.247
, pp. 81-98
-
-
Szewczak, A.A.1
Moore, P.B.2
-
4
-
-
0343898815
-
Determination of the 28 S ribosomal RNA identity element (G4319) for α-sarcin and the relationship of recognition to the selection of the catalytic site
-
A. Glück, and I.G. Wool Determination of the 28 S ribosomal RNA identity element (G4319) for α-sarcin and the relationship of recognition to the selection of the catalytic site J. Mol. Biol. 256 1996 838 848
-
(1996)
J. Mol. Biol.
, vol.256
, pp. 838-848
-
-
Glück, A.1
Wool, I.G.2
-
5
-
-
0032870204
-
Structural motifs in RNA
-
P.B. Moore Structural motifs in RNA Annu. Rev. Biochem. 68 1999 287 300
-
(1999)
Annu. Rev. Biochem.
, vol.68
, pp. 287-300
-
-
Moore, P.B.1
-
6
-
-
0032505999
-
Crystal structure of the ribosomal RNA domain essential for binding elongation factors
-
C.C. Correll, A. Munishkin, Y.L. Chan, Z. Ren, I.G. Wool, and T.A. Steitz Crystal structure of the ribosomal RNA domain essential for binding elongation factors Proc. Natl. Acad. Sci. USA 95 1998 13436 13441
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 13436-13441
-
-
Correll, C.C.1
Munishkin, A.2
Chan, Y.L.3
Ren, Z.4
Wool, I.G.5
Steitz, T.A.6
-
7
-
-
0033578939
-
The two faces of the Escherichia coli 23 S rRNA sarcin/ricin domain: the structure at 1.11 Å resolution
-
C.C. Correll, I.G. Wool, and A. Munishkin The two faces of the Escherichia coli 23 S rRNA sarcin/ricin domain: the structure at 1.11 Å resolution J. Mol. Biol. 292 1999 275 287
-
(1999)
J. Mol. Biol.
, vol.292
, pp. 275-287
-
-
Correll, C.C.1
Wool, I.G.2
Munishkin, A.3
-
8
-
-
0345531092
-
The common and the distinctive features of the bulged-G motif based on a 1.04 Å resolution RNA structure
-
C.C. Correll, J. Beneken, M.J. Plantinga, M. Lubbers, and Y.L. Chan The common and the distinctive features of the bulged-G motif based on a 1.04 Å resolution RNA structure Nucleic Acids Res. 31 2003 6806 6818
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 6806-6818
-
-
Correll, C.C.1
Beneken, J.2
Plantinga, M.J.3
Lubbers, M.4
Chan, Y.L.5
-
9
-
-
0020479406
-
The site of action of α-sarcin on eukaryotic ribosomes. The sequence at the α-sarcin cleavage site in 28 S ribosomal ribonucleic acid
-
Y. Endo, and I.G. Wool The site of action of α-sarcin on eukaryotic ribosomes. The sequence at the α-sarcin cleavage site in 28 S ribosomal ribonucleic acid J. Biol. Chem. 257 1982 9054 9060
-
(1982)
J. Biol. Chem.
, vol.257
, pp. 9054-9060
-
-
Endo, Y.1
Wool, I.G.2
-
10
-
-
0036301166
-
Initiation factor IF2, thiostrepton and micrococcin prevent the binding of elongation factor G to the Escherichia coli ribosome
-
D.M. Cameron, J. Thompson, P.E. March, and A.E. Dahlberg Initiation factor IF2, thiostrepton and micrococcin prevent the binding of elongation factor G to the Escherichia coli ribosome J. Mol. Biol. 319 2002 27 35
-
(2002)
J. Mol. Biol.
, vol.319
, pp. 27-35
-
-
Cameron, D.M.1
Thompson, J.2
March, P.E.3
Dahlberg, A.E.4
-
11
-
-
0036307983
-
Limitation of ribosomal protein L11 availability in vivo affects translation termination
-
N. Van Dyke, W. Xu, and E.J. Murgota Limitation of ribosomal protein L11 availability in vivo affects translation termination J. Mol. Biol. 319 2002 329 339
-
(2002)
J. Mol. Biol.
, vol.319
, pp. 329-339
-
-
Van Dyke, N.1
Xu, W.2
Murgota, E.J.3
-
12
-
-
0029832599
-
A translational fidelity mutation in the universally conserved sarcin/ricin domain of 25S yeast ribosomal RNA
-
R. Liu, and S.W. Liebman A translational fidelity mutation in the universally conserved sarcin/ricin domain of 25S yeast ribosomal RNA RNA 2 1996 254 263
-
(1996)
RNA
, vol.2
, pp. 254-263
-
-
Liu, R.1
Liebman, S.W.2
-
13
-
-
0038152834
-
Affinity purification of ribosomes with a lethal G2655C mutation in 23 S rRNA that affects the translocation
-
A.A. Leonov, P.V. Sergiev, A.A. Bogdanov, R. Brimacombe, and O.A. Dontsova Affinity purification of ribosomes with a lethal G2655C mutation in 23 S rRNA that affects the translocation J. Biol. Chem. 278 2003 25664 25670
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 25664-25670
-
-
Leonov, A.A.1
Sergiev, P.V.2
Bogdanov, A.A.3
Brimacombe, R.4
Dontsova, O.A.5
-
15
-
-
14744291476
-
Ribosome-inactivating proteins from plants: present status and future prospects
-
F. Stirpe, L. Barbieri, M.G. Batelli, M. Soria, and D.A. Lappi Ribosome-inactivating proteins from plants: present status and future prospects Biotechnology 10 1992 405 412
-
(1992)
Biotechnology
, vol.10
, pp. 405-412
-
-
Stirpe, F.1
Barbieri, L.2
Batelli, M.G.3
Soria, M.4
Lappi, D.A.5
-
17
-
-
0017334489
-
Specific cleavage of ribosomal RNA caused by α-sarcin
-
D.G. Schindler, and J.E. Davies Specific cleavage of ribosomal RNA caused by α-sarcin Nucleic Acid Res. 4 1977 1097 1100
-
(1977)
Nucleic Acid Res.
, vol.4
, pp. 1097-1100
-
-
Schindler, D.G.1
Davies, J.E.2
-
18
-
-
0023219950
-
RNA N-glycosidase activity of ricin A-chain. Mechanism of action of the toxic lectin ricin on eukaryotic ribosomes
-
Y. Endo, and K. Tsurugi RNA N-glycosidase activity of ricin A-chain. Mechanism of action of the toxic lectin ricin on eukaryotic ribosomes J. Biol. Chem. 262 1987 8128 8130
-
(1987)
J. Biol. Chem.
, vol.262
, pp. 8128-8130
-
-
Endo, Y.1
Tsurugi, K.2
-
19
-
-
0023664263
-
The mechanism of action of ricin and related toxic lectins on eukaryotic ribosomes. The site and the characteristics of the modification in 28 S ribosomal RNA caused by the toxins
-
Y. Endo, K. Mitsui, M. Motizuki, and K. Tsurugi The mechanism of action of ricin and related toxic lectins on eukaryotic ribosomes. The site and the characteristics of the modification in 28 S ribosomal RNA caused by the toxins J. Biol. Chem. 262 1987 5908 5912
-
(1987)
J. Biol. Chem.
, vol.262
, pp. 5908-5912
-
-
Endo, Y.1
Mitsui, K.2
Motizuki, M.3
Tsurugi, K.4
-
20
-
-
0034814019
-
RNase U2 and α-sarcin: a study of relationships
-
A. Martínez-Ruiz, L. García-Ortega, R. Kao, J. Lacadena, M. Oñaderra, J.M. Mancheño, J. Davies, A. Martínez del Pozo, and J.G. Gavilanes RNase U2 and α-sarcin: a study of relationships Methods Enzymol. 341 2001 335 351
-
(2001)
Methods Enzymol.
, vol.341
, pp. 335-351
-
-
Martínez-Ruiz, A.1
García-Ortega, L.2
Kao, R.3
Lacadena, J.4
Oñaderra, M.5
Mancheño, J.M.6
Davies, J.7
Martínez Del Pozo, A.8
Gavilanes, J.G.9
-
21
-
-
0021111605
-
The ribonuclease activity of the cytotoxin alpha-sarcin. The characteristics of the enzymatic activity of α-sarcin with ribosomes and ribonucleic acids as substrates
-
Y. Endo, P.W. Hubert, and I.G. Wool The ribonuclease activity of the cytotoxin alpha-sarcin. The characteristics of the enzymatic activity of α-sarcin with ribosomes and ribonucleic acids as substrates J. Biol. Chem. 258 1983 2662 2667
-
(1983)
J. Biol. Chem.
, vol.258
, pp. 2662-2667
-
-
Endo, Y.1
Hubert, P.W.2
Wool, I.G.3
-
22
-
-
0031589140
-
Comparison of ribosome-inactivating proteins in the induction of apoptosis
-
J.M. Williams, N. Lea, J.M. Lord, L.M. Roberts, D.V. Milford, and C.M. Taylor Comparison of ribosome-inactivating proteins in the induction of apoptosis Toxicol. Lett. 91 1997 121 127
-
(1997)
Toxicol. Lett.
, vol.91
, pp. 121-127
-
-
Williams, J.M.1
Lea, N.2
Lord, J.M.3
Roberts, L.M.4
Milford, D.V.5
Taylor, C.M.6
-
23
-
-
0034832684
-
Cytotoxic mechanism of the ribotoxin α-sarcin. Induction of cell death via apoptosis
-
N. Olmo, J. Turnay, G. González de Buitrago, I. López de Silanes, J.G. Gavilanes, and M.A. Lizarbe Cytotoxic mechanism of the ribotoxin α-sarcin. Induction of cell death via apoptosis Eur. J. Biochem. 268 2001 2113 2123
-
(2001)
Eur. J. Biochem.
, vol.268
, pp. 2113-2123
-
-
Olmo, N.1
Turnay, J.2
González De Buitrago, G.3
López De Silanes, I.4
Gavilanes, J.G.5
Lizarbe, M.A.6
-
24
-
-
4744365694
-
tRNA selection and kinetic proofreading in translation
-
S.C. Blanchard, R.L. Gonzalez, H.D. Kim, S. Chu, and J.D. Puglisi tRNA selection and kinetic proofreading in translation Nat. Struct. Mol. Biol. 11 2004 1008 1014
-
(2004)
Nat. Struct. Mol. Biol.
, vol.11
, pp. 1008-1014
-
-
Blanchard, S.C.1
Gonzalez, R.L.2
Kim, H.D.3
Chu, S.4
Puglisi, J.D.5
-
25
-
-
0026690643
-
Ribotoxin recognition of ribosomal RNA and a proposal for the mechanism of translocation
-
I.G. Wool, A. Gluck, and Y. Endo Ribotoxin recognition of ribosomal RNA and a proposal for the mechanism of translocation Trends Biochem. Sci. 17 1992 266 269
-
(1992)
Trends Biochem. Sci.
, vol.17
, pp. 266-269
-
-
Wool, I.G.1
Gluck, A.2
Endo, Y.3
-
26
-
-
0034760104
-
Crystal structures of restrictocin-inhibitor complexes with implications for RNA recognition and base flipping
-
X. Yang, T. Gerczei, L.T. Glover, and C.C. Correll Crystal structures of restrictocin-inhibitor complexes with implications for RNA recognition and base flipping Nat. Struct. Biol. 8 2001 968 973
-
(2001)
Nat. Struct. Biol.
, vol.8
, pp. 968-973
-
-
Yang, X.1
Gerczei, T.2
Glover, L.T.3
Correll, C.C.4
-
27
-
-
2142805802
-
RNA recognition and base flipping by the toxin sarcin
-
C.C. Correll, X. Yang, T. Gerczei, J. Beneken, and M.J. Plantinga RNA recognition and base flipping by the toxin sarcin J. Synchrotron Radiat. 11 2004 93 96
-
(2004)
J. Synchrotron Radiat.
, vol.11
, pp. 93-96
-
-
Correll, C.C.1
Yang, X.2
Gerczei, T.3
Beneken, J.4
Plantinga, M.J.5
-
29
-
-
0034598935
-
Solution structure of the E. coli 70S ribosome at 11.5 Å resolution
-
I.S. Gabashvili, R.K. Agrawal, C.M. Spahn, R.A. Grassucci, D.I. Svergun, J. Frank, and P. Penczek Solution structure of the E. coli 70S ribosome at 11.5 Å resolution Cell 100 2000 537 549
-
(2000)
Cell
, vol.100
, pp. 537-549
-
-
Gabashvili, I.S.1
Agrawal, R.K.2
Spahn, C.M.3
Grassucci, R.A.4
Svergun, D.I.5
Frank, J.6
Penczek, P.7
-
30
-
-
0034809220
-
Mitogillin and related fungal ribotoxins
-
R. Kao, A. Martínez-Ruiz, A. Martínez del Pozo, R. Crameri, and J. Davies Mitogillin and related fungal ribotoxins Methods Enzymol. 341 2001 324 335
-
(2001)
Methods Enzymol.
, vol.341
, pp. 324-335
-
-
Kao, R.1
Martínez-Ruiz, A.2
Martínez Del Pozo, A.3
Crameri, R.4
Davies, J.5
-
31
-
-
0034674158
-
The highly refined solution structure of the cytotoxic ribonuclease α-sarcin reveals the structural requirements for substrate recognition and ribonucleolytic activity
-
J.M. Pérez-Cañadillas, J. Santoro, R. Campos-Olivas, J. Lacadena, A. Martínez del Pozo, J.G. Gavilanes, M. Rico, and M. Bruix The highly refined solution structure of the cytotoxic ribonuclease α-sarcin reveals the structural requirements for substrate recognition and ribonucleolytic activity J. Mol. Biol. 299 2000 1061 1073
-
(2000)
J. Mol. Biol.
, vol.299
, pp. 1061-1073
-
-
Pérez-Cañadillas, J.M.1
Santoro, J.2
Campos-Olivas, R.3
Lacadena, J.4
Martínez Del Pozo, A.5
Gavilanes, J.G.6
Rico, M.7
Bruix, M.8
-
33
-
-
0030586029
-
Insights into specificity of cleavage and mechanism of cell entry from the crystal structure of the highly specific Aspergillus ribotoxin, restrictocin
-
X.J. Yang, and K. Moffat Insights into specificity of cleavage and mechanism of cell entry from the crystal structure of the highly specific Aspergillus ribotoxin, restrictocin Structure 4 1996 837 852
-
(1996)
Structure
, vol.4
, pp. 837-852
-
-
Yang, X.J.1
Moffat, K.2
-
34
-
-
0036978243
-
15N NMR relaxation methods
-
15N NMR relaxation methods J. Biomol. NMR 24 2002 301 316
-
(2002)
J. Biomol. NMR
, vol.24
, pp. 301-316
-
-
Pérez-Cañadillas, J.M.1
Guenneugues, M.2
Campos-Olivas, R.3
Santoro, J.4
Martínez Del Pozo, A.5
Gavilanes, J.G.6
Rico, M.7
Bruix, M.8
-
35
-
-
0037165836
-
2-terminal β-hairpin of the ribotoxin α-sarcin produces a nontoxic but active ribonuclease
-
2-terminal β-hairpin of the ribotoxin α-sarcin produces a nontoxic but active ribonuclease J. Biol. Chem. 277 2002 18632 18639
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 18632-18639
-
-
García-Ortega, L.1
Masip, M.2
Mancheño, J.M.3
Oñaderra, M.4
Lizarbe, M.A.5
García-Mayoral, M.F.6
Bruix, M.7
Martínez Del Pozo, A.8
Gavilanes, J.G.9
-
36
-
-
1842454706
-
NMR structure of the noncytotoxic α-sarcin mutant Δ(7-22): the importance of the native conformation of peripheral loops for activity
-
M.F. García-Mayoral, L. García-Ortega, M.P. Lillo, J. Santoro, A. Martínez del Pozo, J.G. Gavilanes, M. Rico, and M. Bruix NMR structure of the noncytotoxic α-sarcin mutant Δ(7-22): the importance of the native conformation of peripheral loops for activity Protein Sci. 13 2004 1000 1011
-
(2004)
Protein Sci.
, vol.13
, pp. 1000-1011
-
-
García-Mayoral, M.F.1
García-Ortega, L.2
Lillo, M.P.3
Santoro, J.4
Martínez Del Pozo, A.5
Gavilanes, J.G.6
Rico, M.7
Bruix, M.8
-
37
-
-
0031668475
-
Structure and stability of variants of the sarcin-ricin loop of 28S rRNA: NMR studies of the prokaryotic SRL and a functional mutant
-
K. Seggerson, and P.B. Moore Structure and stability of variants of the sarcin-ricin loop of 28S rRNA: NMR studies of the prokaryotic SRL and a functional mutant RNA 4 1998 1203 1215
-
(1998)
RNA
, vol.4
, pp. 1203-1215
-
-
Seggerson, K.1
Moore, P.B.2
-
38
-
-
0034794659
-
Eukaryotic elongation factor 2 can bind to the synthetic oligoribonucleotide that mimics sarcin/ricin domain of rat 28S ribosomal RNA
-
S. Tang, W.J. He, H. Xu, W.Y. Liu, and K.C. Ruan Eukaryotic elongation factor 2 can bind to the synthetic oligoribonucleotide that mimics sarcin/ricin domain of rat 28S ribosomal RNA Mol. Cell. Biochem. 223 2001 117 121
-
(2001)
Mol. Cell. Biochem.
, vol.223
, pp. 117-121
-
-
Tang, S.1
He, W.J.2
Xu, H.3
Liu, W.Y.4
Ruan, K.C.5
-
39
-
-
0034637111
-
The complete atomic structure of the large ribosomal subunit at 2.4 Å resolution
-
N. Ban, P. Nissen, J. Hansen, P.B. Moore, and T.A. Steitz The complete atomic structure of the large ribosomal subunit at 2.4 Å resolution Science 289 2000 905 920
-
(2000)
Science
, vol.289
, pp. 905-920
-
-
Ban, N.1
Nissen, P.2
Hansen, J.3
Moore, P.B.4
Steitz, T.A.5
-
40
-
-
0023917453
-
The cytotoxins α-sarcin and ricin retain their specificity when tested on a synthetic oligoribonucleotide (35-mer) that mimics a region of 28 S ribosomal ribonucleic acid
-
Y. Endo, Y.L. Chan, A. Lin, K. Tsurugi, and I.G. Wool The cytotoxins α-sarcin and ricin retain their specificity when tested on a synthetic oligoribonucleotide (35-mer) that mimics a region of 28 S ribosomal ribonucleic acid J. Biol. Chem. 263 1988 7917 7920
-
(1988)
J. Biol. Chem.
, vol.263
, pp. 7917-7920
-
-
Endo, Y.1
Chan, Y.L.2
Lin, A.3
Tsurugi, K.4
Wool, I.G.5
-
41
-
-
0029881007
-
MOLMOL: a program for display and analysis of macromolecular structures
-
R. Koradi, M. Billeter, and K. Wüthrich MOLMOL: a program for display and analysis of macromolecular structures J. Mol. Graph. 14 1996 51 55
-
(1996)
J. Mol. Graph.
, vol.14
, pp. 51-55
-
-
Koradi, R.1
Billeter, M.2
Wüthrich, K.3
-
42
-
-
0027431887
-
Ribosomal protein L6: structural evidence of gene duplication from a primitive RNA binding protein
-
B.L. Golden, V. Ramakrishnan, and S.W. White Ribosomal protein L6: structural evidence of gene duplication from a primitive RNA binding protein EMBO J. 12 2004 4901 4908
-
(2004)
EMBO J.
, vol.12
, pp. 4901-4908
-
-
Golden, B.L.1
Ramakrishnan, V.2
White, S.W.3
-
43
-
-
0029643859
-
The crystal structure of ribosomal protein L14 reveals an important organizational component of the translational apparatus
-
C. Davies, S.W. White, and V. Ramakrishnan The crystal structure of ribosomal protein L14 reveals an important organizational component of the translational apparatus Structure 4 1996 55 66
-
(1996)
Structure
, vol.4
, pp. 55-66
-
-
Davies, C.1
White, S.W.2
Ramakrishnan, V.3
-
44
-
-
2942615089
-
The roles of ribosomal proteins in the structure assembly, and evolution of the large ribosomal subunit
-
D.J. Klein, P.B. Moore, and T.A. Steitz The roles of ribosomal proteins in the structure assembly, and evolution of the large ribosomal subunit J. Mol. Biol. 340 2004 141 177
-
(2004)
J. Mol. Biol.
, vol.340
, pp. 141-177
-
-
Klein, D.J.1
Moore, P.B.2
Steitz, T.A.3
-
45
-
-
16644372753
-
Atomic model of the Thermus thermophilus 70S ribosome developed in silico
-
C.S. Tung, and K.Y. Sanbonmatsu Atomic model of the Thermus thermophilus 70S ribosome developed in silico Biophys. J. 87 2004 2714 2722
-
(2004)
Biophys. J.
, vol.87
, pp. 2714-2722
-
-
Tung, C.S.1
Sanbonmatsu, K.Y.2
-
46
-
-
0033617455
-
Molecular dissection of mitogillin reveals that the fungal ribotoxins are a family of natural genetically engineered ribonucleases
-
R. Kao, and J. Davies Molecular dissection of mitogillin reveals that the fungal ribotoxins are a family of natural genetically engineered ribonucleases J. Biol. Chem. 274 1999 12576 12582
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 12576-12582
-
-
Kao, R.1
Davies, J.2
|