메뉴 건너뛰기




Volumn 47, Issue 8, 2005, Pages 998-1008

Genomic rearrangement in endogenous long terminal repeat retrotransposons of rice lines introgressed by wild rice (Zizania latifolia Griseb.)

Author keywords

Genomic rearrangements; Introgressive hybridization; Long terminal repeat (LTR) retrotransposon; Rice; Zizania

Indexed keywords

CROP IMPROVEMENT; GENOMICS; PLANT BREEDING; RICE;

EID: 28844480828     PISSN: 16729072     EISSN: 17447909     Source Type: Journal    
DOI: 10.1111/j.1744-7909.2005.00103.x     Document Type: Article
Times cited : (7)

References (58)
  • 1
    • 0346091287 scopus 로고    scopus 로고
    • Exploring the genomic mysteries of polyploidy in cotton
    • Adams K, Wendel JF (2004). Exploring the genomic mysteries of polyploidy in cotton. Biol J Linn Soc 82, 573-581.
    • (2004) Biol J Linn Soc , vol.82 , pp. 573-581
    • Adams, K.1    Wendel, J.F.2
  • 2
    • 0001080414 scopus 로고
    • Hybridization as an evolutionary stimulus
    • Anderson E, Stebbins GLJR (1954). Hybridization as an evolutionary stimulus. Evolution 8, 378-388.
    • (1954) Evolution , vol.8 , pp. 378-388
    • Anderson, E.1    Stebbins, G.L.J.R.2
  • 4
    • 1542752643 scopus 로고    scopus 로고
    • Transfer and origin of adaptations through natural hybridization: Were Anderson and Stebbins right?
    • Arnold ML (2004). Transfer and origin of adaptations through natural hybridization: Were Anderson and Stebbins right? Plant Cell 16, 562-570.
    • (2004) Plant Cell , vol.16 , pp. 562-570
    • Arnold, M.L.1
  • 5
    • 0033976643 scopus 로고    scopus 로고
    • Transposable element contributions to plant gene and genome evolution
    • Bennetzen JL (2000). Transposable element contributions to plant gene and genome evolution. Plant Mol Biol 42, 251-269.
    • (2000) Plant Mol Biol , vol.42 , pp. 251-269
    • Bennetzen, J.L.1
  • 6
    • 0037633476 scopus 로고    scopus 로고
    • Plant LTR-retrotransposons and MITEs: Control of transposition and impact on the evolution of plant genes and genomes
    • Casacuberta JM, Santiago N (2003). Plant LTR-retrotransposons and MITEs: Control of transposition and impact on the evolution of plant genes and genomes. Gene 311, 1-11.
    • (2003) Gene , vol.311 , pp. 1-11
    • Casacuberta, J.M.1    Santiago, N.2
  • 7
    • 0033824517 scopus 로고    scopus 로고
    • Genetic and epigenetic interactions in allopolyploid plants
    • Comai L (2000). Genetic and epigenetic interactions in allopolyploid plants. Plant Mol Biol 43, 387-399.
    • (2000) Plant Mol Biol , vol.43 , pp. 387-399
    • Comai, L.1
  • 8
    • 0346127430 scopus 로고    scopus 로고
    • Cryptic trysts, genomic mergers, and plant speciation
    • Cronn RC, Wendel JF (2003). Cryptic trysts, genomic mergers, and plant speciation. New Phytol 161, 133-142.
    • (2003) New Phytol , vol.161 , pp. 133-142
    • Cronn, R.C.1    Wendel, J.F.2
  • 9
    • 4444376316 scopus 로고    scopus 로고
    • Alien DNA introgression into rice causes heritable alterations in DNA methylation patterns in an active retrotransposon Tos17
    • Dong YZ, Liu ZL, Dong YS et al. (2004). Alien DNA introgression into rice causes heritable alterations in DNA methylation patterns in an active retrotransposon Tos17. Acta Bot Sin 46, 100-109.
    • (2004) Acta Bot Sin , vol.46 , pp. 100-109
    • Dong, Y.Z.1    Liu, Z.L.2    Dong, Y.S.3
  • 10
    • 16344366778 scopus 로고    scopus 로고
    • Allopolyploidy: A shaping force in the evolution of wheat genomes
    • Feldman M, Levy AA (2005). Allopolyploidy: A shaping force in the evolution of wheat genomes. Cytogenet Genome Res 109, 250-258.
    • (2005) Cytogenet Genome Res , vol.109 , pp. 250-258
    • Feldman, M.1    Levy, A.A.2
  • 11
    • 0037153127 scopus 로고    scopus 로고
    • Sequence and analysis of rice chromosome 4
    • Feng Q, Zhang Y, Hao P et al. (2002). Sequence and analysis of rice chromosome 4. Nature 420, 316-320.
    • (2002) Nature , vol.420 , pp. 316-320
    • Feng, Q.1    Zhang, Y.2    Hao, P.3
  • 12
    • 0036250001 scopus 로고    scopus 로고
    • Plant transposable elements: Where genetics meets genomics
    • Feschotte C, Jiang N, Wessler SR (2002). Plant transposable elements: Where genetics meets genomics. Nat Rev Genet 3, 329-341.
    • (2002) Nat Rev Genet , vol.3 , pp. 329-341
    • Feschotte, C.1    Jiang, N.2    Wessler, S.R.3
  • 13
    • 2442657861 scopus 로고    scopus 로고
    • Evolutionary history of Oryza sativa LTR retrotransposons: A preliminary survey of the rice genome sequences
    • Gao L, McCarthy EM, Ganko EW, McDonald JF (2004). Evolutionary history of Oryza sativa LTR retrotransposons: A preliminary survey of the rice genome sequences. BMC Genomics 5, 1-18.
    • (2004) BMC Genomics , vol.5 , pp. 1-18
    • Gao, L.1    McCarthy, E.M.2    Ganko, E.W.3    McDonald, J.F.4
  • 14
    • 0004042690 scopus 로고
    • Columbia University Press, New York
    • Grant V (1981). Plant Speciation. Columbia University Press, New York.
    • (1981) Plant Speciation
    • Grant, V.1
  • 15
    • 0037546919 scopus 로고    scopus 로고
    • A role for the mismatch repair system during incipient speciation in Saccharomyces
    • Greig D, Travisano M, Louis EJ, Borts RH (2003). A role for the mismatch repair system during incipient speciation in Saccharomyces. J Evol Biol 16, 429-437.
    • (2003) J Evol Biol , vol.16 , pp. 429-437
    • Greig, D.1    Travisano, M.2    Louis, E.J.3    Borts, R.H.4
  • 16
    • 0141451716 scopus 로고    scopus 로고
    • Rapid genomic changes in interspecific and intergeneric hybrids and allopolyploids of Triticeae
    • Han FP, Fedak G, Ouellet T, Liu B (2003). Rapid genomic changes in interspecific and intergeneric hybrids and allopolyploids of Triticeae. Genome 46, 716-723.
    • (2003) Genome , vol.46 , pp. 716-723
    • Han, F.P.1    Fedak, G.2    Ouellet, T.3    Liu, B.4
  • 17
    • 0141907687 scopus 로고    scopus 로고
    • Comparative genetics at the gene and chromosome levels between rice (Oryza sativa) and wild rice (Zizania palustris)
    • Hass BL, Pires JC, Porter R, Phillips RL, Jackson SA (2003). Comparative genetics at the gene and chromosome levels between rice (Oryza sativa) and wild rice (Zizania palustris). Theor Appl Genet 107, 773-782.
    • (2003) Theor Appl Genet , vol.107 , pp. 773-782
    • Hass, B.L.1    Pires, J.C.2    Porter, R.3    Phillips, R.L.4    Jackson, S.A.5
  • 19
    • 0029842813 scopus 로고    scopus 로고
    • Transposable elements behavior following viral genomic stress in Drosophila melanogaster inbred line
    • Jouan-Dufournel I, Cosset FL, Contamine D, Verdier G, Biemont C (1996). Transposable elements behavior following viral genomic stress in Drosophila melanogaster inbred line. J Mol Evol 43, 19-27.
    • (1996) J Mol Evol , vol.43 , pp. 19-27
    • Jouan-Dufournel, I.1    Cosset, F.L.2    Contamine, D.3    Verdier, G.4    Biemont, C.5
  • 20
    • 0002902693 scopus 로고
    • Simple plant DNA isolation procedures
    • Beckman JS, Osborn TC, eds. Kluwer Academic Publishers, Dordrecht
    • Kidwell KK, Osborn TC (1992). Simple plant DNA isolation procedures. In: Beckman JS, Osborn TC, eds. Plant Genomes: Methods for Genetic and Physical Mapping. Kluwer Academic Publishers, Dordrecht. pp. 1-13.
    • (1992) Plant Genomes: Methods for Genetic and Physical Mapping , pp. 1-13
    • Kidwell, K.K.1    Osborn, T.C.2
  • 21
    • 0346003772 scopus 로고    scopus 로고
    • The plant MITE mPing is mobilized in anther culture
    • Kikuchi K, Terauchi K, Wada M, Hirano HY (2003). The plant MITE mPing is mobilized in anther culture. Nature 421, 167-170.
    • (2003) Nature , vol.421 , pp. 167-170
    • Kikuchi, K.1    Terauchi, K.2    Wada, M.3    Hirano, H.Y.4
  • 22
    • 0034674440 scopus 로고    scopus 로고
    • Inhibition of DNA methyltransferase inhibits DNA replication
    • Knox JD, Araujo FD, Bigey P et al. (2000). Inhibition of DNA methyltransferase inhibits DNA replication. J Biol Chem 275, 17986-17990.
    • (2000) J Biol Chem , vol.275 , pp. 17986-17990
    • Knox, J.D.1    Araujo, F.D.2    Bigey, P.3
  • 24
    • 0036918868 scopus 로고    scopus 로고
    • The impact of polyploidy on grass genome evolution
    • Levy AA, Feldman M (2002). The impact of polyploidy on grass genome evolution. Plant Physiol 130, 1587-1593.
    • (2002) Plant Physiol , vol.130 , pp. 1587-1593
    • Levy, A.A.1    Feldman, M.2
  • 25
    • 0347352344 scopus 로고    scopus 로고
    • Genetic and epigenetic reprogramming of the wheat genome upon allopolyploidization
    • Levy AA, Feldman M (2004). Genetic and epigenetic reprogramming of the wheat genome upon allopolyploidization. Biol J Linn Soc 82, 607-613.
    • (2004) Biol J Linn Soc , vol.82 , pp. 607-613
    • Levy, A.A.1    Feldman, M.2
  • 26
    • 0034108958 scopus 로고    scopus 로고
    • Identification and chromosomal localization of a transcriptionally active retrotransposon of Ty3-gypsy type in rice
    • Li ZY, Chen SY, Zheng XW, Zhu LH (2000). Identification and chromosomal localization of a transcriptionally active retrotransposon of Ty3-gypsy type in rice. Genome 43, 404-408.
    • (2000) Genome , vol.43 , pp. 404-408
    • Li, Z.Y.1    Chen, S.Y.2    Zheng, X.W.3    Zhu, L.H.4
  • 27
    • 0033645667 scopus 로고    scopus 로고
    • Retrotransposon activation followed by rapid repression in introgressed rice plants
    • Liu B, Wendel JF (2000). Retrotransposon activation followed by rapid repression in introgressed rice plants. Genome 43, 874-880.
    • (2000) Genome , vol.43 , pp. 874-880
    • Liu, B.1    Wendel, J.F.2
  • 28
    • 0036889244 scopus 로고    scopus 로고
    • Non-Mendelian phenomena in allopolyploid genome evolution
    • Liu B, Wendel JF (2002). Non-Mendelian phenomena in allopolyploid genome evolution. Curr Genomics 3, 489-506.
    • (2002) Curr Genomics , vol.3 , pp. 489-506
    • Liu, B.1    Wendel, J.F.2
  • 29
    • 0345149793 scopus 로고    scopus 로고
    • Epigenetic phenomena and the evolution of plant allopolyploids
    • Liu B, Wendel JF (2003). Epigenetic phenomena and the evolution of plant allopolyploids. Mol Phylogenet Evol 29, 365-379.
    • (2003) Mol Phylogenet Evol , vol.29 , pp. 365-379
    • Liu, B.1    Wendel, J.F.2
  • 30
    • 0033501451 scopus 로고    scopus 로고
    • Production and molecular characterization of rice lines with introgressed traits from a wild species of Zizania latifolia Griseb
    • Liu B, Piao HM, Zhao FS, Zhao JH, Zhao R (1999). Production and molecular characterization of rice lines with introgressed traits from a wild species of Zizania latifolia Griseb. J Genet Breed 53, 279-284.
    • (1999) J Genet Breed , vol.53 , pp. 279-284
    • Liu, B.1    Piao, H.M.2    Zhao, F.S.3    Zhao, J.H.4    Zhao, R.5
  • 31
    • 0036705147 scopus 로고    scopus 로고
    • Characterization of two groups of low-copy, chromosome-specific sequences isolated from chromosome 7B in common wheat
    • Liu ZL, Dong YZ, Liu B (2002). Characterization of two groups of low-copy, chromosome-specific sequences isolated from chromosome 7B in common wheat. Acta Bot Sin 44, 946-950.
    • (2002) Acta Bot Sin , vol.44 , pp. 946-950
    • Liu, Z.L.1    Dong, Y.Z.2    Liu, B.3
  • 32
    • 4444247071 scopus 로고    scopus 로고
    • Extensive alterations in DNA methylation and transcription in rice caused by introgression from Zizania latifolia
    • Liu ZL, Wang YM, Shen Y, Guo WL, Hao S, Liu B (2004). Extensive alterations in DNA methylation and transcription in rice caused by introgression from Zizania latifolia. Plant Mol Biol 54, 571-582.
    • (2004) Plant Mol Biol , vol.54 , pp. 571-582
    • Liu, Z.L.1    Wang, Y.M.2    Shen, Y.3    Guo, W.L.4    Hao, S.5    Liu, B.6
  • 33
    • 2342466982 scopus 로고    scopus 로고
    • Analyses of LTR-retrotransposon structures reveal recent and rapid genomic DNA loss in rice
    • Ma J, Devos KM, Bennetzen JL (2004a). Analyses of LTR-retrotransposon structures reveal recent and rapid genomic DNA loss in rice. Genome Res 14, 860-869.
    • (2004) Genome Res , vol.14 , pp. 860-869
    • Ma, J.1    Devos, K.M.2    Bennetzen, J.L.3
  • 34
    • 11144296219 scopus 로고    scopus 로고
    • Polyploidization-induced genome variation in triticale
    • Ma XF, Fang P, Gustafson JP (2004b). Polyploidization-induced genome variation in triticale. Genome 47, 839-848.
    • (2004) Genome , vol.47 , pp. 839-848
    • Ma, X.F.1    Fang, P.2    Gustafson, J.P.3
  • 35
    • 16344369286 scopus 로고    scopus 로고
    • Genome evolution of allopolyploids: A process of cytological and genetic diploidization
    • Ma XF, Gustafson JP (2005). Genome evolution of allopolyploids: A process of cytological and genetic diploidization. 109, 236-249.
    • (2005) , vol.109 , pp. 236-249
    • Ma, X.F.1    Gustafson, J.P.2
  • 36
    • 14744272333 scopus 로고    scopus 로고
    • The effect of stress on genome regulation and structure
    • Madlung A, Comai L (2004). The effect of stress on genome regulation and structure. Ann Bot 94, 481-495.
    • (2004) Ann Bot , vol.94 , pp. 481-495
    • Madlung, A.1    Comai, L.2
  • 37
    • 0033200356 scopus 로고    scopus 로고
    • Rapid structural and epigenetic changes in polyploid and aneuploid genomes
    • Matzke MA, Scheid OM, Matzke AJ (1999). Rapid structural and epigenetic changes in polyploid and aneuploid genomes. Bioessays 21, 761-767.
    • (1999) Bioessays , vol.21 , pp. 761-767
    • Matzke, M.A.1    Scheid, O.M.2    Matzke, A.J.3
  • 38
    • 0037072652 scopus 로고    scopus 로고
    • Long terminal repeat retrotransposons of Oryza sativa
    • RESEARCH0053
    • McCarthy EM, Liu J, Gao LZ, McDonald JF (2002). Long terminal repeat retrotransposons of Oryza sativa. Genome Biol 3, RESEARCH0053.
    • (2002) Genome Biol , vol.3
    • McCarthy, E.M.1    Liu, J.2    Gao, L.Z.3    McDonald, J.F.4
  • 39
    • 0021715393 scopus 로고
    • The significance of responses of the genome to challenge
    • McClintock B (1984). The significance of responses of the genome to challenge. Science 226, 792-801.
    • (1984) Science , vol.226 , pp. 792-801
    • McClintock, B.1
  • 40
    • 0035958048 scopus 로고    scopus 로고
    • Foreign DNA integration. Genome-wide perturbations of methylation and transcription in the recipient genomes
    • Muller K, Heller H, Doerfler W (2001). Foreign DNA integration. Genome-wide perturbations of methylation and transcription in the recipient genomes. J Biol Chem 276, 14271-14278.
    • (2001) J Biol Chem , vol.276 , pp. 14271-14278
    • Muller, K.1    Heller, H.2    Doerfler, W.3
  • 41
  • 42
    • 0037426878 scopus 로고    scopus 로고
    • Mobilization of a transposon in the rice genome
    • Nakazaki T, Okumoto Y, Horibata A et al. (2003). Mobilization of a transposon in the rice genome. Nature 421, 170-172.
    • (2003) Nature , vol.421 , pp. 170-172
    • Nakazaki, T.1    Okumoto, Y.2    Horibata, A.3
  • 43
    • 0034860131 scopus 로고    scopus 로고
    • Allopolyploidy-induced rapid genome evolution in the wheat (Aegilops-Triticum) group
    • Ozkan H, Levy AA, Feldman M (2001). Allopolyploidy-induced rapid genome evolution in the wheat (Aegilops-Triticum) group. Plant Cell 13, 1735-1747.
    • (2001) Plant Cell , vol.13 , pp. 1735-1747
    • Ozkan, H.1    Levy, A.A.2    Feldman, M.3
  • 44
    • 0014194225 scopus 로고
    • Mutagenic effect of irradiated DNA in Drosophila melanogaster
    • Parkash O (1967). Mutagenic effect of irradiated DNA in Drosophila melanogaster. Nature 214, 611-612.
    • (1967) Nature , vol.214 , pp. 611-612
    • Parkash, O.1
  • 45
    • 0024994237 scopus 로고
    • Intragenic transposition of Ac generates a new allele of the maize P gene
    • Peterson T (1990). Intragenic transposition of Ac generates a new allele of the maize P gene. Genetics 126, 469-476.
    • (1990) Genetics , vol.126 , pp. 469-476
    • Peterson, T.1
  • 46
    • 0028984103 scopus 로고
    • The role of hybridization in evolution: Old wine in new skins
    • Rieseberg LH (1995). The role of hybridization in evolution: Old wine in new skins. Am J Bot 82, 944-953.
    • (1995) Am J Bot , vol.82 , pp. 944-953
    • Rieseberg, L.H.1
  • 47
    • 0023955742 scopus 로고
    • Regulation of mouse satellite DNA replication time
    • Selig S, Ariel M, Goitein R, Marcus M, Cedar H (1988). Regulation of mouse satellite DNA replication time. EMBO J 7, 419-426.
    • (1988) EMBO J , vol.7 , pp. 419-426
    • Selig, S.1    Ariel, M.2    Goitein, R.3    Marcus, M.4    Cedar, H.5
  • 48
    • 0034866855 scopus 로고    scopus 로고
    • Sequence elimination and cytosine methylation are rapid and reproducible responses of the genome to wide hybridization and allopolyploidy in wheat
    • Shaked H, Kashkush K, Ozkan H, Feldman M, Levy AA (2001). Sequence elimination and cytosine methylation are rapid and reproducible responses of the genome to wide hybridization and allopolyploidy in wheat. Plant Cell 13, 1749-1759.
    • (2001) Plant Cell , vol.13 , pp. 1749-1759
    • Shaked, H.1    Kashkush, K.2    Ozkan, H.3    Feldman, M.4    Levy, A.A.5
  • 49
    • 16344382176 scopus 로고    scopus 로고
    • Mobilization of the active MITE transposons mPing and Pong in rice by introgression from wild rice (Zizania latifolia Griseb.)
    • Shan XH, Liu ZL, Dong ZY et al. (2005) Mobilization of the active MITE transposons mPing and Pong in rice by introgression from wild rice (Zizania latifolia Griseb.). Mol Biol Evol 22, 976-990.
    • (2005) Mol Biol Evol , vol.22 , pp. 976-990
    • Shan, X.H.1    Liu, Z.L.2    Dong, Z.Y.3
  • 50
    • 0347388384 scopus 로고    scopus 로고
    • Advances in the study of polyploidy since plant speciation
    • Soltis DE, Soltis PS, Tate JA (2004). Advances in the study of polyploidy since plant speciation. New Phytol 167, 173-192.
    • (2004) New Phytol , vol.167 , pp. 173-192
    • Soltis, D.E.1    Soltis, P.S.2    Tate, J.A.3
  • 51
    • 0001716746 scopus 로고
    • The role of hybridization in evolution
    • Stebbins GL Jr (1959). The role of hybridization in evolution. Proc Am Philos Soc 103, 231-251.
    • (1959) Proc Am Philos Soc , vol.103 , pp. 231-251
    • Stebbins Jr., G.L.1
  • 52
    • 0141605863 scopus 로고    scopus 로고
    • Characterization of the copy number of RIRE10 retrotransposon and transcriptional activity of its LTR in rice genome
    • Wang R, Hong GF, Han B (2003). Characterization of the copy number of RIRE10 retrotransposon and transcriptional activity of its LTR in rice genome. Acta Biochim Biophys Sin 35, 768-773.
    • (2003) Acta Biochim Biophys Sin , vol.35 , pp. 768-773
    • Wang, R.1    Hong, G.F.2    Han, B.3
  • 53
    • 0001154497 scopus 로고    scopus 로고
    • Retrotransposons in the genomes of higher plants
    • Wang SP, Zhang QF (1998). Retrotransposons in the genomes of higher plants. Acta Bot Sin 40, 291-297.
    • (1998) Acta Bot Sin , vol.40 , pp. 291-297
    • Wang, S.P.1    Zhang, Q.F.2
  • 54
    • 0031127313 scopus 로고    scopus 로고
    • LTR-retrotransposons in rice: Sequence heterogeneity, species distribution and chromosomal locations
    • Wang SP, Zhang QF, Maughan PJ, Saghai Maroof MA (1997). LTR-retrotransposons in rice: Sequence heterogeneity, species distribution and chromosomal locations. Plant Mol Biol 33, 1051-1058.
    • (1997) Plant Mol Biol , vol.33 , pp. 1051-1058
    • Wang, S.P.1    Zhang, Q.F.2    Maughan, P.J.3    Saghai Maroof, M.A.4
  • 55
    • 25444473362 scopus 로고    scopus 로고
    • Extensive de novo genomic variation in rice induced by introgression from wild rice (Zizania latifolia Griseb.)
    • (in press)
    • Wang YM, Dong ZY, Zhang ZJ et al. (2005). Extensive de novo genomic variation in rice induced by introgression from wild rice (Zizania latifolia Griseb.) Genetics 170 (in press).
    • (2005) Genetics , vol.170
    • Wang, Y.M.1    Dong, Z.Y.2    Zhang, Z.J.3
  • 56
    • 0033974956 scopus 로고    scopus 로고
    • Genome evolution in polyploids
    • Wendel JF (2000). Genome evolution in polyploids. Plant Mol Biol 42, 225-249.
    • (2000) Plant Mol Biol , vol.42 , pp. 225-249
    • Wendel, J.F.1
  • 57
    • 0029583698 scopus 로고
    • LTR-retrotransposons and MITEs: Important players in the evolution of plant genomes
    • Wessler SR, Bureau TE, White SE (1995). LTR-retrotransposons and MITEs: Important players in the evolution of plant genomes. Curr Opin Genet Dev 5, 88814-88821.
    • (1995) Curr Opin Genet Dev , vol.5 , pp. 88814-88821
    • Wessler, S.R.1    Bureau, T.E.2    White, S.E.3
  • 58
    • 0037023384 scopus 로고    scopus 로고
    • A draft sequence of the rice genome (Oryza sativa L. ssp. indica)
    • Yu J, Hu S, Wang J et al. (2002). A draft sequence of the rice genome (Oryza sativa L. ssp. indica). Science 296, 79-92.
    • (2002) Science , vol.296 , pp. 79-92
    • Yu, J.1    Hu, S.2    Wang, J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.