Rapid detection of genomic imbalances using micro-arrays consisting of pooled BACs covering all human chromosome arms

Nucleic Acids Research

Volumn 33, Issue 18, 2005, Pages 1-6

  Knijnenburg, Jeroen ^a   van der Burg, Marja ^a   Nilsson, Philomeen ^b   van Amstel, Hans Kristian Ploos ^b   Tanke, Hans ^a   Szuhai, Károly ^a  

^a LEIDEN UNIVERSITY MEDICAL CENTER   (Netherlands)

^b UNIVERSITY MEDICAL CENTER UTRECHT   (Netherlands)

Author keywords

[No Author keywords available]

Indexed keywords

GENOMIC DNA;

ARTICLE; BLASTOMERE; CANCER CELL CULTURE; CHROMOSOME ARM; COMPARATIVE GENOMIC HYBRIDIZATION; CONTROLLED STUDY; CYTOGENETICS; DISSEMINATED CANCER; DNA DETERMINATION; DNA HYBRIDIZATION; DNA MICROARRAY; FEMALE; FLUORESCENCE ANALYSIS; GENE AMPLIFICATION; GENE EXPRESSION PROFILING; GENE REPLICATION; GENETIC SELECTION; GENETIC VARIABILITY; HUMAN; HUMAN CELL; HUMAN CHROMOSOME; INCUBATION TIME; MALE; MOLECULAR CLONING; ONCOLOGY; PRENATAL DIAGNOSIS; PRIORITY JOURNAL; REPRODUCIBILITY; SENSITIVITY ANALYSIS; ANEUPLOIDY; BACTERIAL ARTIFICIAL CHROMOSOME; CELL LINE; EVALUATION; GENOMICS; METHODOLOGY; TIME;

ANEUPLOIDY; CELL LINE; CHROMOSOMES, ARTIFICIAL, BACTERIAL; CHROMOSOMES, HUMAN; FEMALE; GENOMICS; HUMANS; MALE; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; TIME FACTORS;

EID: 28544445946     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gni161     Document Type: Article

References (15)

1. Pinkel,D., Segraves,R., Sudar,D., Clark,S., Poole,I., Kowbel,D., Collins,C., Kuo,W.L., Chen,C., Zhai,Y. et al. (1998) High resolution analysis of DNA copy number variation using comparative genomic hybridization to microarrays. Nature Genet., 20, 207-211.
2. Ishkanian,A.S., Malloff,C.A., Watson,S.K., DeLeeuw,R.J., Chi,B., Coe,B.P., Snijders,A., Albertson,D.G., Pinkel,D., Marra,M.A. et al. (2004) A tiling resolution DNA microarray with complete coverage of the human genome. Nature Genet., 36, 299-303.
3. Kraus,J., Pantel,K., Pinkel,D., Albertson,D.G. and Speicher,M.R. (2003) High-resolution genomic profiling of occult micrometastatic tumor cells. Genes Chromosomes. Cancer, 36, 159-166.
4. Langer,S., Geigl,J.B., Gangnus,R. and Speicher,M.R. (2005) Sequential application of interphase-FISH and CGH to single cells. Lab Invest, 85, 582-592.
5. Eilers,P.H. and de Menezes,R.X. (2005) Quantile smoothing of array CGH data. Bioinformatics., 21, 1146-1153.
6. Jong,K., Marchiori,E., Meijer,G., Vaart,A.V, and Ylstra,B. (2004) Breakpoint identification and smoothing of array comparative genomic hybridization data. Bioinformatics., 20, 3636-3637.
7. Fiegler,H., Carr,P., Douglas,E.J., Burford,D.C., Hunt,S., Scott,C.E., Smith,J., Vetrie,D., Gorman,P., Tomlinson,I.P. and Carter,N.P. (2003) DNA microarrays for comparative genomic hybridization based on DOP-PCR amplification of BAC and PAC clones. Genes Chromosomes. Cancer, 36, 361-374.
8. Knijnenburg,J., Szuhai,K., Giltay,J., Molenaar,L., Sloos,W., Poot,M., Tanke,H.J. and Rosenberg,C. (2005) Insights from genomic microarrays into structural chromosome rearrangements. Am. J. Med. Genet. A, 132, 36-40.
9. Wessendorf,S., Fritz,B., Wrobel,G., Nessling,M., Lampel,S., Goettel,D., Kuepper,M., Joos,S., Hopman,T., Kokocinski,F. et al. (2002) Automated screening for genomic imbalances using matrix-based comparative genomic hybridization. Lab Invest., 82, 47-60.
10. White,S.J., Breuning,M.H. and den Dunnen,J.T. (2004) Detecting copy number changes in genomic DNA: MAPH and MLPA. Methods Cell Biol., 75, 751-768.
11. Hu,D.G., Webb,G. and Hussey,N. (2004) Aneuploidy detection in single cells using DNA array-based comparative genomic hybridization. Mol. Hum. Reprod., 10, 283-289.
12. Munne,S. (2003) Preimplantation genetic diagnosis and human implantation-a review. Placenta, 24, S70-S76.
13. Baart,E.B., Martini,E. and Van Opstal,D. (2004) Screening for aneuploidies of ten different chromosomes in two rounds of FISH: A short and reliable protocol. Prenat. Diagn., 24, 955-961.
14. Wilton,L., Voullaire,L., Sargeant,P., Williamson,R. and McBain,J. (2003) Preimplantation aneuploidy screening using comparative genomic hybridization or fluorescence in situ hybridization of embryos from patients with recurrent implantation failure. Fertil. Steril., 80, 860-868.
15. Verlinsky,Y. and Kuliev,A. (2003) Preimplantation diagnosis for aneuploidies using fluorescence in situ hybridization or comparative genomic hybridization. Fertil. Steril., 80, 869-870.