Anisotropic and sub-diffusive water motion at the surface of DNA and of an anionic micelle CsPFO

Journal of Physics Condensed Matter

Volumn 17, Issue 49, 2005, Pages

  Pal, Subrata ^a   Maiti, Prabal K ^a   Bagchi, Biman ^a  

^a INDIAN INSTITUTE OF SCIENCE   (India)

Author keywords

[No Author keywords available]

Indexed keywords

ANISOTROPY; DIFFUSION; HYDRATION; MICELLES;

MEAN SQUARE DISPLACEMENT (MSD); WATER MOTION;

DNA;

EID: 28544443213     PISSN: 09538984     EISSN: 1361648X     Source Type: Journal    
DOI: 10.1088/0953-8984/17/49/023     Document Type: Article

References (59)

1. Nandi N, Bhattacharyya K and Bagchi B 2000 Chem. Rev. 100 2013-46
2. Bhattacharyya K and Bagchi B 2000 J. Phys. Chem. B 104 10603-13
3. Bagchi B 2003 Annu. Rep. Prog. Chem. C 99 127-75
4. Bagchi B 2005 Chem. Rev. 105 3197-219
5. Bhattacharyya K 2003 Acc. Chem. Res. 36 95
6. Halle B 2004 Phil. Trans. R. Soc. B 359 1207-24
7. Modig K, Liepinsch E, Otting G and Halle B 2004 J. Am. Chem. Soc. 126 102-14
8. Russo D, Murarka R K, Copley J R D and Head-Gordon T 2005 J. Phys. Chem. B 109 12966-75
9. Nelson D L and Cox M M 2000 Lehninger Principles of Biochemistry (New York: Worth Publishers)
10. Oosawa F 1971 Polyelectrolytes (New York: Dekker)
11. Branus E B, Madaras M L, Coleman R S, Murphy C J and Berg M A 2002 Phys. Rev. Lett. 88 158101
12. Bonvin A M J J, Sunnerhagen M, Otting G and van Gunsteren W F 1998 J. Mol. Biol. 282 859-73
13. Makarov V, Pettitt B M and Feig M 2002 Acc. Chem. Res. 35 367-84
14. Leipinsh E, Otting G and Wüthrich 1992 Nucleic Acids Res. 24 6549-53
15. Sunnerhagen M, Denisov V P, Venu K, Bonvin A J M M, Carey J, Halle B and Otting G 1998 J. Mol. Biol. 282 857-8
16. Makarov V, Feig M, Andrews B K and Pettitt B M 1998 Biophys. J 75 150-8
17. Bizzari A R and Cannistraro S 2002 J. Phys. Chem. B 106 6617-33
18. Gu W and Schoenborn B P 1995 Proteins Funct. Struct. Genet. 22 20-6
19. Lin S-T, Maiti P K and Goddard W A III 2005 J. Phys. Chem. B 109 8663-72
20. Bandyopadhyay S, Chakraborty S, Balasubramanian S, Pal S and Bagchi B 2004 J. Phys. Chem. B 108 12608-16
21. Case D A et al 2002 AMBER7 (San Francisco, CA: University of California)
22. Cornell W D et al 1995 J. Am. Chem. Soc. 117 5179-97
23. Lee H, Darden T and Pedersen L 1995 Chem. Phys. Lett. 243 229-35
24. York D M, Yang W T, Lee H, Darden T and Pedersen L G 1995 J. Am. Chem. Soc. 117 5001-2
25. Miaskiewicz K, Miller J, Cooney M and Osman R 1996 J. Am. Chem. Soc. 118 9156-63
26. Feig M and Pettitt B M 1998 Biophys. J. 75 134-49
27. Bevan D R, Li L P, Pedersen L G and Darden T A 2000 Biophys. J. 78 668-82
28. Darden T, York D and Pedersen L 1993 J. Chem. Phys. 98 10089-92
29. Essmann U, Perera L, Berkowitz M L, Darden T, Lee H and Pedersen L G 1995 J. Chem. Phys. 103 8577-93
30. Tung C S and Carter E S 1994 CABIOS 10 427-33
31. Ryckaert J P, Ciccotti G and Berendsen H J C 1977 J. Comput. Phys. 23 327-41
32. Berendsen H J C, Postma J P M, van Gunsteren W F, DiNola A and Haak J R 1984 J. Chem. Phys. 81 3684-90
33. Maiti P K, Pascal T A, Vaidehi N and Goddard W A 2004 Nucleic Acids Res. 32 6047-56
34. Maiti P K, Pascal T A, Vaidehi N, Heo J and Goddard W A 2005 Biophys. J. at press
35. Nandi N and Bagchi B 1997 J. Phys. Chem. B 101 10954-61
36. Nandi N and Bagchi B 1998 J. Phys. Chem. A 102 8217-22
37. Bhattacharyya S M, Wang Z-G and Zewail A H 2003 J. Phys. Chem. B 107 13218-28
38. Mukherjee A and Bagchi B 2003 Phys. Chem. Commun. 6 28-31
39. Arai S et al 2005 Nucleic Acids Res. 33 3017-24
40. Allen M P and Tildesley D J 1987 Computer Simulation of Liquids (Oxford: Clarendon)
41. Settles M and Doster W 1996 Faraday Disscuss. 103 269-79
42. Metzler R and Klafter J 2000 Phys. Rep. 339 1-77
43. Metzler R and Klafter J 2000 Phys. Rev. E 61 6308-11
44. Luzar A and Chandler D 1996 Nature 379 55-7
45. Balasubramanian S, Pal S and Bagchi B 2002 Phys. Rev. Lett. 89 115505
46. Bruce C D, Senapati S, Berkowitz M L, Parera L and Forbes M D E 2002 J. Phys. Chem. B 106 10902-7
47. Pal S, Balasubramanian S and Bagchi B 2003 Phys. Rev. E 67 061502
48. Balasubramanian S and Bagchi B 2002 J. Phys. Chem. B 106 3668-72
49. Ikeda M, Nakazato K, Mizuta H, Green M, Hasko D and Ahmed H 2003 Nanotechnology 14 123-7
50. Pal S, Maiti P K and Bagchi B 2005 Manuscript under preparation
51. Feig M and Pettitt B M 1999 J. Mol. Biol. 286 1075-95
52. Feig M and Pettitt B M 1999 Biophys. J. 77 1769-81
53. Ponomarev S Y, Thayer K M and Beveridge D L 2004 Proc. Natl Acad. Sci. USA 101 14771-5
54. Chandra A 2000 Phys. Rev. Lett. 85 768
55. Chowdhuri S and Chandra A 2001 J. Chem. Phys. 115 3732-41
56. Chowdhuri S and Chandra A 2002 Phys. Rev. E 66 041203
57. Chandra A 2003 J. Phys. Chem. B 107 3899-906
58. Choudhury N and Pettitt B M 2005 J. Phys. Chem. B 109 6422-9
59. Nilsson L and Halle B 2005 Proc. Natl Acad. Sci. USA 102 13867-72