Conserved and variable domains in satellite DNAs of mitotic parthenogenetic root-knot nematode species

Gene

Volumn 362, Issue 1-2, 2005, Pages 44-50

  Meštrović, Nevenka ^a   Randig, Onivaldo ^b,c   Abad, Pierre ^b   Plohl, Miroslav ^a   Castagnone Sereno, Philippe ^b  

^a RUDER BO KOVI INSTITUTE   (Croatia)

^b Centre National de la Recherche Scientifique   (France)

^c Fellow of the National Research Council   (Brazil)

Author keywords

Concerted evolution; Homogenization; Meloidogyne; Tandem repeats; Variability analysis

Indexed keywords

NUCLEOTIDE; SATELLITE DNA;

ARTICLE; CHROMOSOME SUBSTITUTION; CONTROLLED STUDY; GENE MUTATION; GENETIC VARIABILITY; MELOIDOGYNE JAVANICA; MELOIDOGYNE PARANAENSIS; MITOSIS; MOLECULAR CLONING; NEMATODE; NONHUMAN; NUCLEOTIDE SEQUENCE; PARTHENOGENESIS; PRIORITY JOURNAL; ROOT KNOT;

AMINO ACID SEQUENCE; ANIMALS; CONSERVED SEQUENCE; DNA, SATELLITE; EVOLUTION, MOLECULAR; MOLECULAR SEQUENCE DATA; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, AMINO ACID; TYLENCHOIDEA; VARIATION (GENETICS);

MELOIDOGYNE; MELOIDOGYNE ARENARIA; MELOIDOGYNE JAVANICA; MELOIDOGYNE PARANAENSIS;

EID: 28244443016     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.gene.2005.07.033     Document Type: Article

References (36)

1. R.M.D.G. Carneiro, R.M.A. Almeida, and P. Qhénéhervé Enzyme phenotype of Meloidogyne spp. populations Nematology 2 2000 645 654
2. P. Castagnone-Sereno, H. Leroy, J.P. Semblat, F. Leroy, P. Abad, and C. Zijlstra Unusual and strongly structured sequence variation in a complex satellite DNA family from the nematode Meloidogyne chitwoodi J. Mol. Evol. 46 1998 225 233
3. P. Castagnone-Sereno, J.P. Semblat, F. Leroy, and P. Abad A new AluI satellite DNA in the root-knot nematode Meloidogyne fallax: relationships with satellites from the sympatric species M. hapla and M. chitwoodi Mol. Biol. Evol. 15 1998 1115 1122
4. P. Castagnone-Sereno, F. Leroy, and P. Abad Cloning and characterization of an extremely conserved satellite DNA family from the root-knot nematode Meloidogyne arenaria Genome 43 2000 346 353
5. M. Cesari, A. Luchetti, M. Passamonti, V. Scali, and B. Mantovani Polymerase chain reaction amplification of the Bag320 satellite family reveals the ancestral library and past gene conversion events in Bacillus rossius (Insecta Phasmatodea) Gene 312 2003 289 295
6. I.T. De Ley, P. De Ley, A. Vierstraete, G. Kassen, M. Moens, and J. Vanfleteren Phylogenetic analyses of Meloidogyne small subunit rDNA J. Nematol. 34 2002 319 327
7. G.A. Dover Molecular drive: a cohesive model of species evolution Nature 299 1982 111 117
8. G.A. Dover Molecular drive in multigene families: how biological novelties arise, spread and are assimilated Trends Genet. 2 1986 159 165
9. G.A. Dover Molecular drive Trends Genet. 18 2002 587 589
10. S.E. Hall, G. Kettler, and D. Preuss Centromere satellites from Arabidopsis populations: maintenance of conserved and variable domains Genome Res. 13 2003 195 205
11. S. Henikoff, K. Ahmad, and H.S. Malik The centromere paradox: stable inheritance with rapidly evolving DNA Science 293 2001 1098 1102
12. J.S. Heslop-Harrison, M. Murata, Y. Ogura, T. Schwarzacher, and F. Motoyoshi Polymorphisms and genomic organization of repetitive DNA from centromeric regions of Arabidopsis chromosomes Plant Cell 11 1999 31 42
13. J.S. Heslop-Harrison, A. Brandes, and T. Schwarzacher Tandemly repeated DNA sequences and centromeric chromosomal regions of Arabidopsis species Chromosome Res. 11 2003 241 253
14. A. Luchetti, M. Cesari, G. Carrara, S. Cavicchi, M. Passamonti, V. Scali, and B. Mantovani Unisexuality and molecular drive: bag320 sequence diversity in Bacillus taxa (Insecta Phasmatodea) J. Mol. Evol. 56 2003 587 596
15. A. Luchetti, A. Marino, F. Scanabissi, and B. Mantovani Genomic dynamics of a low-copy-number satellite DNA family in Leptestheria dahalacensis (Crustacea, Branchiopoda, Conchostraca) Gene 342 2004 313 320
16. B. Mantovani Satellite sequence turnover in parthenogenetic systems: the apomictic triploid hybrid Bacillus lynceorum (Insecta, Phasmatodea) Mol. Biol. Evol. 15 1998 1288 1297
17. N. Meštrović, M. Plohl, B. Mravinac, and Crossed D sign. Ugarković Evolution of satellite DNAs from the genus Palorus-experimental evidence for the "library" hypothesis Mol. Biol. Evol. 15 1998 1062 1068
18. B. Mravinac, M. Plohl, N. Meštrović, and Crossed D sign. Ugarković Sequence of PRAT satellite DNA frozen in some coleopteran species J. Mol. Evol. 54 2002 774 783
19. B. Mravinac, M. Plohl, and Crossed D sign. Ugarković Conserved patterns in the evolution of Tribolium satellite DNAs Gene 332 2004 169 177
20. E.C. Pableo, and A.C. Triantaphyllou DNA complexity of the root-knot nematode (Meloidogyne spp.) genome J. Nematol. 21 1989 260 263
21. V. Petrović, and M. Plohl Sequence divergence and conservation in organizationally distinct subfamilies of Donax trunculus satellite DNA Gene 362 2005 37 43 10.1016/j.gene.2005.06.044
22. C. Piotte, P. Castagnone-Sereno, M. Bongiovanni, A. Dalmasso, and P. Abad Cloning and characterization of two satellite DNAs in the low-C-value genome of the nematode Meloidogyne spp Gene 138 1994 175 180
23. M. Plohl, N. Meštrović, B. Bruvo, and Crossed D sign. Ugarković Similarity of structural features and evolution of satellite DNAs from Palorus subdepressus (Coleoptera) and related species J. Mol. Evol. 46 1998 234 239
24. J. Pons, E. Petitpierre, and C. Juan Evolutionary dynamics of satellite DNA family PIM357 in species of the genus Pimelia (Tenebrionidae, Coleoptera) Mol. Biol. Evol. 19 2002 1329 1340
25. D. Posada, and K.A. Crandall Modeltest: testing the model of DNA substitution Bioinformatics 14 1998 817 818
26. O. Randig, M. Bongiovanni, R.M. Carneiro, J.L. Sarah, and P. Castagnone-Sereno A species-specific satellite DNA family in the genome of the coffee root-knot nematode Meloidogyne exigua: application to molecular diagnostics of the parasite Mol. Plant Pathol. 3 2002 431 437
27. F. Robles, R. de la Herran, A. Ludwig, C. Ruiz Rejon, M. Ruiz Rejon, and M.A. Garrido-Ramos Evolution of ancient satellite DNAs in sturgeon genomes Gene 338 2004 133 142
28. D. Rojas-Rousse, Y. Bigot, and G. Periquet DNA insertions as a component of the evolution of unique satellite DNA families in two genera of parasitoid wasps: Diadromus and Eupelmus (Hymenoptera) Mol. Biol. Evol. 10 1993 383 396
29. L.Y. Romanova Evidence for selection in evolution of alpha satellite DNA: the central role of CENP-B/pJ alpha binding region J. Mol. Biol. 261 1996 334 340
30. J. Rozas, and R. Rozas DnaSP version 3: an integrated program for molecular population genetics and molecular evolution analysis Bioinformatics 15 1999 174 175
31. T. Strachan, D. Webb, and G.A. Dover Transition stages of molecular drive in multiple-copy DNA families in Drosophila EMBO J. 4 1985 1701 1708
32. X. Sun, H.D. Le, J.M. Wahlstrom, and G.H. Karpen Sequence analysis of a functional Drosophila centromere Genome Res. 13 2003 182 194
33. D.L. Swofford PAUP*: (Phylogenetic Analysis Using Parsimony*) and Other Methods. Version 4 1998 Sinauer Associates Sunderland Mass
34. G.C.M.V. Tenente, P. De Ley, T. De Ley, G. Karssen, and J.R. Vanfleteren Sequence analysis of the D2/D3 region of the large subunit rDNA from different Meloidogyne isolates Nematropica 34 2004 1 12
35. J.D. Thompson, T.J. Gibson, F. Plewniak, F. Jeanmougin, and D.G. Higgins The Clustal X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools Nucleic Acids Res. 24 1997 4876 4882
36. A.C. Triantaphyllou Cytogenetics, cytotaxonomy and phylogeny of root-knot nematodes J.N. Sasser C.C. Carter An Advanced Treatise on Meloidogyne vol. 1 1985 North Carolina State University Graphics Raleigh 113 126