Polymorphisms and genomic organization of repetitive DNA from centromeric regions of Arabidopsis chromosomes

Plant Cell

Volumn 11, Issue 1, 1999, Pages 31-42

  Heslop Harrison, John S ^a,b   Murata, Minoru ^a   Ogura, Yutaka ^a   Schwarzacher, Trude ^a,b   Motoyoshi, Fusao ^a  

^a OKAYAMA UNIVERSITY   (Japan)

^b JOHN INNES CENTRE   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

CHROMOSOME; GENETIC POLYMORPHISM; GENOME ORGANIZATION; PLANT GENETICS; POLYMERASE CHAIN REACTION;

ARABIDOPSIS; EMBRYOPHYTA;

EID: 0032742483     PISSN: 10404651     EISSN: None     Source Type: Journal    
DOI: 10.1105/tpc.11.1.31     Document Type: Article

References (49)

1. Aragon-Alcaide, L., Miller, T., Schwarzacher, T., Reader, S., and Moore, G. (1996). A cereal centromeric sequence. Chromosoma 105, 261-268.
2. Bevan, M., et al. (1997). Objective: The complete sequence of a plant genome. Plant Cell 9, 476-478.
3. Brandes, A., Heslop-Harrison, J.S., Kamm, A., Kubis, S., Doudrick, R.L., and Schmidt, T. (1997a). Comparative analysis of the chromosomal and genomic organization of Ty1-copia-like retrotransposons in pteridophytes, gymnosperms and angiosperms. Plant Mol. Biol. 33, 11-21.
4. Brandes, A., Thompson, H., Dean, C., and Heslop-Harrison, J.S. (1997b). Multiple repetitive DNA sequences in the paracentromeric regions of Arabidopsis thaliana L. Chromosome Res. 5, 238-246.
5. Brinkley, B.R., Ouspenski, I., and Zinkowski, R.P. (1992). Structure and molecular organization of the centromere-kinetochore complex. Trends Cell Biol. 2, 15-21.
6. Centola, M., and Carbon, J. (1994). Cloning and characterization of centromeric DNA from Neurospora crassa. Mol. Cell. Biol. 14, 1510-1519.
7. Choo, K.H., Vissel, B., Nagy, A., Earle, E., and Kalitsis, P. (1991) A survey of the genomic distribution of a satellite DNA on all the human chromosomes, and derivation of a new consensus sequence. Nucleic Acids Res. 19, 1179-1182.
8. Clarke, L. (1990). Centromeres of budding and fission yeasts. Trends Genet. 6, 150-154.
9. Clarke, L., Baum, M., Marschall, L.G., Ngan, V.K., and Steiner, N.C. (1993). Structure and function of Schizosaccharomyces pombe centromeres. Cold Spring Harbor Symp. Quant. Biol. 58, 687-695.
10. Copenhaver, G.P., Browne, W.E., and Preuss, D. (1998). Assaying genome-wide recombination and centromere functions with Arabidopsis tetrads. Proc. Natl. Acad. Sci. USA 95, 247-252.
11. Dod, B., Mottez, E., Desmarais, E., Bonhomme, F., and Roizes, G. (1989) Concerted evolution of light satellite DNA in genus Mus implies amplification and homogenization of large blocks of repeats. Mol. Biol. Evol. 6, 478-491.
12. Dover, G.A. (1982). Molecular drive: A non-Darwinian model of evolution Nature 299, 111-117.
13. Goldberg, I.G., Sawhney, H., Pluta, A.F., Warburton, P.E., and Earnshaw, W.C. (1996). Surprising deficiency of CENP-B binding-sites in African-green monkey α-satellite DNA - Implications for CENP-B function at centromeres. Mol. Cell. Biol. 16, 5156-5168.
14. Harrington, J.J., Van Bokkelen, G., Mays, R.W., Gustashaw, K., and Willard, H.F. (1997). Formation of de novo centromeres and construction of first-generation human artificial microchromosomes. Nature Genet. 15, 345-355.
15. Harrison, G.E., and Heslop-Harrison, J.S. (1995). Centromeric repetitive DNA in the genus Brassica. Theor. Appl. Genet. 90, 157-165.
16. Hegemann, J.H., and Fleig, U.N. (1993). The centromere of budding yeast. Bioessays 15, 451-460.
17. Heslop-Harrison, J.S., Schwarzacher, T., Anamthawat-Jónsson, K., Leitch, A.R., Shi, M., and Leitch, I.J. (1991). In situ hybridization with automated chromosome denaturation. Technique 3, 109-115.
18. Heslop-Harrison, J.S., Brandes, A., Taketa, S., Schmidt, T., Vershinin, A.V., Alkhimova, E.G., Kamm, A., Doudrick, R.L., Schwarzacher, T., Katsiotis, A., Kubis, S., Kumar, A., Pearce, S.R., Flavell, A.J., and Harrison, G.E. (1997). The chromosomal distributions of Ty1-copia group retrotransposable elements in higher plants and their implications for genome evolution. Genetica 100, 197-204.
19. Jiang, J., Nasuda, S., Dong, F., Scherrer, C.W., Woo, S.-S., Wing, R.A., Gill, B.S., and Ward, D.C. (1996). A conserved repetitive DNA element located in the centromeres of cereal chromosomes. Proc. Natl. Acad. Sci. USA 93, 14210-14213.
20. Kamm, A., Schmidt, T., and Heslop-Harrison, J.S. (1994). Molecular and physical organization of highly repetitive undermethylated DNA from Pennisetum glaucum. Mol. Gen. Genet. 244, 420-425.
21. Kamm, A., Galasso, I., Schmidt, T., and Heslop-Harrison, J.S. (1995) Analysis of a repetitive DNA family from Arabidopsis arenosa and relationships between Arabidopsis species. Plant Mol. Biol. 27, 853-862.
22. Kipling, D., and Warburton, P.E. (1997). Centromeres, CENP-B and Tigger too. Trends Genet. 13, 141-145.
23. Kipling, D., Wilson, H.E., Mitchell, A.R., Taylor, B.A., and Cooke, H.J. (1994). Mouse centromere mapping using oligonucleotide probes that detect variants of the minor satellite. Chromosoma 103, 46-55.
24. Koch, J., Hindkjaer, J., Kolvraa, S., and Bolund, L. (1995). Construction of a panel of chromosome-specific oligonucleotide probes (PRINS-primers) useful for the identification of individual human chromosomes in situ. Cytogenet. Cell Genet. 71, 142-147.
25. Leach, C.R., Donald, T.M., Franks, T.K., Spiniello, S.S., Hanrahan, C.F., and Timmis, J.N. (1995). Organization and origin of a B chromosome centromeric sequence from Brachycome dichromosomatica. Chromosoma 103, 708-714.
26. Lee, C., Wevrick, R., Fisher, R.B., Ferguson-Smith, M.A., and Lin, C.C. (1997). Human centromeric DNAs. Hum. Genet. 100, 291-304.
27. Maluszynska, J., and Heslop-Harrison, U.S. (1991). Localization of tandemly repeated DNA sequences in Arabidopsis thaliana. Plant J. 1, 159-166.
28. Martinez-Zapater, J.M., Estelle, M.A., and Somerville, C.R. (1986). A highly repeated DNA sequence in Arabidopsis thaliana. Mol. Gen. Genet. 204, 417-423.
29. Morgante, M., Jurman, I., Shi, L., Zhu, T., Keim, P., and Rafalski, J.A. (1997). The STR120 satellite DNA of soybean. Organization, evolution and chromosomal specificity. Chromosome Res. 5, 363-373.
30. Murata, M., Ogura, Y., and Motoyoshi, F. (1994). Centromeric repetitive sequences in Arabidopsis thaliana. Jpn. J. Genet. 69, 361-370.
31. Muro, Y., Masumoto, H., Yoda, K., Nozaki, N., Ohashi, M., and Okazaki, T. (1992). Centromere protein B assembles human centromeric α-satellite at the 17-bp sequence, CENP-B box. J. Cell Biol. 166, 585-596.
32. Nagaki, K., Tsujimoto, H., and Sasakuma, T. (1998). A novel repetitive sequence of sugar cane, SCEN family, locating on centromeric regions. Chromosome Res, 6, 295-302.
33. Pelissier, T., Tutois, S., Tourmente, S., Deragon, J.M., and Picard, G. (1996). DNA regions flanking the major Arabidopsis thaliana satellite are principally enriched in Athila retroelement sequences. Genetica 97, 141-151.
34. Round, E.K., Flowers, S.K., and Richards, E.J. (1997). Arabidopsis thaliana centromere regions: Genetic map positions and repetitive DNA structure. Genome Res. 7, 1045-1053.
35. Scheid, O.M., Afsar, K., and Paszkowski, J. (1994). Gene inactivation in Arabidopsis thaliana is not accompanied by an accumulation of repeat-induced point mutations. Mol. Gen. Genet. 244, 325-330.
36. Schmidt, R., West, J., Love, K., Lenehan, Z., Lister, C., Thompson, H., Bouchez, D., and Dean, C. (1995). Physical map and organization of Arabidopsis thaliana chromosome. Science 270, 480-483.
37. Schmidt, T., and Heslop-Harrison, J.S. (1996). High resolution mapping of repetitive DNA by in situ hybridization: Molecular and chromosomal features of prominent dispersed and discretely localized DNA families from the wild beet species Beta procumbens. Plant Mol. Biol. 30, 1099-1114.
38. Schwarzacher, T., Wang, M.L., Leitch, A.R., Miller, N., Moore, G., and Heslop-Harrison, J.S. (1997). Flow cytometric analysis of the chromosomes and stability of a wheat cell-culture line. Theor. Appl. Genet. 94, 91-97.
39. Selker, E.U., Fritz, D.Y., and Singer, M.J. (1993). Dense nonsymmetrical DNA methylation resulting from repeat-induced point mutation in Neurospora. Science 262, 1724-1728.
40. Simoens, C.R., Gielen, J., Van Montagu, M., and Inzé, D. (1988). Characterization of highly repetitive sequences of Arabidopsis thaliana. Nucleic Acids Res. 16, 6753-6766.
41. Steinberg, R.A., and Gorman, K.B. (1992). Linked spontaneous CG→TA mutations at CpG sites in the gene for protein kinase regulatory subunit. Mol. Cell. Biol. 12, 767-772.
42. Sugimoto, K., Shibata, A., and Himeno, M. (1998). Nucleotide specificity at the boundary and size requirement of the target sites recognized by human centromere protein B (CENP-B) in vitro. Chromosome Res. 6, 133-140.
43. Sunkel, C.E., and Coelho, P.A. (1995). The elusive centromere: Sequence divergence and functional conservation. Curr. Opin. Genet. Dev. 5, 756-767.
44. Tyler-Smith, C., Corish, P., and Burns, E. (1998). Neocentromeres. the Y chromosome and centromere evolution. Chromosome Res. 6, 65-71.
45. Uzawa, S., and Yanagida, M. (1992). Visualization of centromeric and nucleolar DNA in fission yeast by fluorescence in situ hybridization. J. Cell Sci. 101, 267-275.
46. Vershinin, A., Schwarzacher, T., and Heslop-Harrison, J.S. (1995). The large scale genomic organization of repetitive DNA families at the telomeres of rye chromosomes. Plant Cell 7, 1823-1833.
47. Willard, H.F. (1985). Chromosome-specific organization of human α satellite DNA. Am. J. Hum. Genet. 37, 524-532.
48. Wilmen, A., Pick, H., Niedenthal, R.K., Sen-Gupta, M., and Hegemann, J.H. (1994). The yeast centromere CDEI/Cpf1 complex: Differences between in vitro binding and in vivo function. Nucleic Acids Res. 22, 2791-2800.
49. Zachgo, E.A., Wang, M.L., Dewdney, J., Bouchez, D., Camilleri, C., Belmonte, S., Huang, L., Dolan, M., and Goodman, H.M. (1996). A physical map of chromosome 2 of Arabidopsis thaliana. Genome Res. 6, 19-25.