-
1
-
-
0034928217
-
Growth stage-based phenotypic analysis of Arabidopsis: A model for high throughput functional genomics in plants
-
Boyes,D.C. et al. (2001) Growth stage-based phenotypic analysis of Arabidopsis: A model for high throughput functional genomics in plants. Plant Cell, 13, 1499-1510.
-
(2001)
Plant Cell
, vol.13
, pp. 1499-1510
-
-
Boyes, D.C.1
-
2
-
-
2342426729
-
Gene selection for oligonucleotide array: An approach using PM probe level data
-
Chen,D.-T. et al. (2004) Gene selection for oligonucleotide array: An approach using PM probe level data. Bioinformatics, 20, 854-862.
-
(2004)
Bioinformatics
, vol.20
, pp. 854-862
-
-
Chen, D.-T.1
-
3
-
-
0036126861
-
A systematic statistical linear modeling approach to oligonucleotide array experiments
-
Chu,T.-M. et al. (2002) A systematic statistical linear modeling approach to oligonucleotide array experiments. Math. Biosci., 176, 35-51.
-
(2002)
Math. Biosci.
, vol.176
, pp. 35-51
-
-
Chu, T.-M.1
-
4
-
-
0042594496
-
Estimation of transformation parameters for microarray data
-
Durbin,B. and Rocke,D.M. (2003) Estimation of transformation parameters for microarray data. Bioinformatics, 19, 1360-1367.
-
(2003)
Bioinformatics
, vol.19
, pp. 1360-1367
-
-
Durbin, B.1
Rocke, D.M.2
-
5
-
-
17344372326
-
Data management and analysis for gene expression arrays
-
Ermolaeva,O. et al. (2001) Data management and analysis for gene expression arrays. Nat. Genet., 20, 19-23.
-
(2001)
Nat. Genet.
, vol.20
, pp. 19-23
-
-
Ermolaeva, O.1
-
6
-
-
0242440112
-
Normalization of DNA-Microarray data by nonlinear correlation maximization
-
Faller,D. et al. (2003) Normalization of DNA-Microarray data by nonlinear correlation maximization. J. Comput. Biol., 10, 751-762.
-
(2003)
J. Comput. Biol.
, vol.10
, pp. 751-762
-
-
Faller, D.1
-
7
-
-
1342288026
-
Affy-analysis of Affymetrix GeneChip data at the probe level
-
Gautier,L. et al. (2004) Affy-analysis of Affymetrix GeneChip data at the probe level. Bioinformatics, 20, 307-315.
-
(2004)
Bioinformatics
, vol.20
, pp. 307-315
-
-
Gautier, L.1
-
8
-
-
0034862548
-
Maximum likelihood estimation of optimal scaling factors for expression array normalization
-
San Jose, California January 2001
-
Hartemink,A.J., Gifford,D.K., Jaakkola,T.S. and Young,R.A. (2001) Maximum likelihood estimation of optimal scaling factors for expression array normalization. In Proceedings of SPIE Bios 2001, San Jose, California January 2001.
-
(2001)
Proceedings of SPIE Bios 2001
-
-
Hartemink, A.J.1
Gifford, D.K.2
Jaakkola, T.S.3
Young, R.A.4
-
9
-
-
18744381360
-
Evaluation of normalization procedures for oligonucleotide array data based on spiked cRNA controls
-
Hill,A.A. et al. (2001) Evaluation of normalization procedures for oligonucleotide array data based on spiked cRNA controls. Genome Biol., 2, 1-13.
-
(2001)
Genome Biol.
, vol.2
, pp. 1-13
-
-
Hill, A.A.1
-
10
-
-
0036947892
-
Robust estimators for expression analysis
-
Hubbell,E. et al. (2002) Robust estimators for expression analysis. Bioinformatics, 18, 1585-1592.
-
(2002)
Bioinformatics
, vol.18
, pp. 1585-1592
-
-
Hubbell, E.1
-
11
-
-
0142121516
-
Exploration, normalization, and summaries of high density oligonucleotide array probe level data
-
Irizarry,R.A. et al. (2003a) Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics, 4, 249-264.
-
(2003)
Biostatistics
, vol.4
, pp. 249-264
-
-
Irizarry, R.A.1
-
12
-
-
12344280017
-
Summaries of Affymetrix GeneChip probe level data
-
Irizarry,R.A. et al. (2003b) Summaries of Affymetrix GeneChip probe level data. Nucleic Acids Res., 31, e15.
-
(2003)
Nucleic Acids Res.
, vol.31
-
-
Irizarry, R.A.1
-
13
-
-
0034730124
-
Importance of replication in microarray gene expression studies: Statistical methods and evidence from repetitive cDNA hybridizations
-
Lee,M.-I.T. et al. (2000) Importance of replication in microarray gene expression studies: Statistical methods and evidence from repetitive cDNA hybridizations. Proc. Natl Acad. Sci. USA, 97, 9834-9839.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 9834-9839
-
-
Lee, M.-I.T.1
-
14
-
-
0036855390
-
Theoretical and experimental comparisons of gene expression indexes for oligonucleotide arrays
-
Lemon,W.J. et al. (2002) Theoretical and experimental comparisons of gene expression indexes for oligonucleotide arrays. Bioinformatics, 18, 1470-1476.
-
(2002)
Bioinformatics
, vol.18
, pp. 1470-1476
-
-
Lemon, W.J.1
-
15
-
-
0035793042
-
Model-based analysis of oligonucleotide arrays: Expression index computation and outlier detection
-
Li,C. and Wong,W.H. (2001) Model-based analysis of oligonucleotide arrays: Expression index computation and outlier detection. Proc. Natl Acad. Sci. USA, 98, 31-36.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 31-36
-
-
Li, C.1
Wong, W.H.2
-
16
-
-
84984933234
-
High density synthetic oligonucleotide arrays
-
Lipshutz,R. et al. (1999) High density synthetic oligonucleotide arrays. Nat. Genet. Suppl., 21, 20-24.
-
(1999)
Nat. Genet. Suppl.
, vol.21
, pp. 20-24
-
-
Lipshutz, R.1
-
17
-
-
2942560476
-
Responses of primary and secondary metabolism to sugar accumulation revealed by microarray expression analysis of the Arabidopsis mutant, pho3
-
Lloyd,J.C. and Zakhleniuk,O.V. (2004) Responses of primary and secondary metabolism to sugar accumulation revealed by microarray expression analysis of the Arabidopsis mutant, pho3. J. Exptl Bot., 55, 1221-1230.
-
(2004)
J. Exptl. Bot.
, vol.55
, pp. 1221-1230
-
-
Lloyd, J.C.1
Zakhleniuk, O.V.2
-
18
-
-
10544256600
-
Expression monitoring by hybridization to high-density oligonucleotide arrays
-
Lockhart,D. et al. (1996) Expression monitoring by hybridization to high-density oligonucleotide arrays. Nat. Biotechnol., 14, 1675-1680.
-
(1996)
Nat. Biotechnol.
, vol.14
, pp. 1675-1680
-
-
Lockhart, D.1
-
19
-
-
11244333072
-
Statistical process control for large scale microarray experiments
-
Model,F. et al. (2002) Statistical process control for large scale microarray experiments. Bioinformatics, 18 (Suppl. 1), S155-S163.
-
(2002)
Bioinformatics
, vol.18
, Issue.SUPPL. 1
-
-
Model, F.1
-
20
-
-
0036365465
-
From features to expression: High-density oligonucleotide array analysis revisited
-
RESEARCH0018
-
Naef,F. et al. (2002) From features to expression: High-density oligonucleotide array analysis revisited. Genome Biol., 3, RESEARCH0018.
-
(2002)
Genome Biol.
, vol.3
-
-
Naef, F.1
-
21
-
-
0005193405
-
How many replicates of arrays are required to detect gene expression changes in microarray experiments? A mixture model approach
-
Pan,W. et al. (2002) How many replicates of arrays are required to detect gene expression changes in microarray experiments? A mixture model approach. Genome Biol., 3, 1-10.
-
(2002)
Genome Biol.
, vol.3
, pp. 1-10
-
-
Pan, W.1
-
22
-
-
0036898577
-
Microarray data normalization and transformation
-
Quackenbush,J. (2002) Microarray data normalization and transformation. Nat. Genet. Suppl., 32, 496-501.
-
(2002)
Nat. Genet. Suppl.
, vol.32
, pp. 496-501
-
-
Quackenbush, J.1
-
23
-
-
0035684378
-
A model for measurement error for gene expression arrays
-
Rocke,D.M. and Durbin,B. (2001) A model for measurement error for gene expression arrays. J. Comput. Biol., 8, 557-569.
-
(2001)
J. Comput. Biol.
, vol.8
, pp. 557-569
-
-
Rocke, D.M.1
Durbin, B.2
-
24
-
-
0037606155
-
Approximate variance-stabilizing transformations for gene-expression microarray data
-
Rocke,D.M. and Durbin,B. (2003) Approximate variance-stabilizing transformations for gene-expression microarray data. Bioinformatics, 19, 966-972.
-
(2003)
Bioinformatics
, vol.19
, pp. 966-972
-
-
Rocke, D.M.1
Durbin, B.2
-
25
-
-
12244298154
-
Statistical analysis of high-density oligonucleotide arrays: A multiplicative noise model
-
Šášik,R. et al. (2002) Statistical analysis of high-density oligonucleotide arrays: A multiplicative noise model. Bioinformatics, 18, 1633-1640.
-
(2002)
Bioinformatics
, vol.18
, pp. 1633-1640
-
-
Šášik, R.1
-
26
-
-
0034536614
-
Analyzing high-density oligonucleotide gene expression array data
-
Schadt,E.E. et al. (2000) Analyzing high-density oligonucleotide gene expression array data. J. Cell. Biochem., 80, 192-202.
-
(2000)
J. Cell. Biochem.
, vol.80
, pp. 192-202
-
-
Schadt, E.E.1
-
27
-
-
0035752668
-
Feature extraction and normalization algorithms for high-density oligonucleotide gene expression array data
-
Schadt,E.E. et al. (2001) Feature extraction and normalization algorithms for high-density oligonucleotide gene expression array data. J. Cell. Biochem. Suppl., 37, 120-125.
-
(2001)
J. Cell. Biochem. Suppl.
, vol.37
, pp. 120-125
-
-
Schadt, E.E.1
-
28
-
-
0000757868
-
-
Schena,M. (ed.), BioTechniques Books, Westborough
-
Warrington,J.A., Dee,S. and Trulson,M. (2000) In Schena,M. (ed.), Microarray Biochip Technology. BioTechniques Books, Westborough, pp. 119-148.
-
(2000)
Microarray Biochip Technology
, pp. 119-148
-
-
Warrington, J.A.1
Dee, S.2
Trulson, M.3
-
29
-
-
9444266425
-
Sample size for detecting differentially expressed genes in microarray experiments
-
Wei,C. et al. (2004) Sample size for detecting differentially expressed genes in microarray experiments. BMC Genomics, 5, 87-96.
-
(2004)
BMC Genomics
, vol.5
, pp. 87-96
-
-
Wei, C.1
-
30
-
-
0037200201
-
A new non-linear normalization method for reducing variability in DNA microarray experiments
-
research 0048.1-0048.16
-
Workman,C. et al. (2002) A new non-linear normalization method for reducing variability in DNA microarray experiments. Genome Biol., 3, research 0048.1-0048.16.
-
(2002)
Genome Biol.
, vol.3
-
-
Workman, C.1
-
31
-
-
1342294092
-
Normalization for cDNA microarray data: A robust composite method addressing single and multiple slide systematic variation
-
Yang,Y.H. et al. (2002) Normalization for cDNA microarray data: A robust composite method addressing single and multiple slide systematic variation. Nucleic Acids Res., 30, e15.
-
(2002)
Nucleic Acids Res.
, vol.30
-
-
Yang, Y.H.1
|