Methods for the study of alternative splicing

Methods

Volumn 37, Issue 4, 2005, Pages 289-291

  Garcia Blanco, Mariano A ^a  

^a DUKE UNIVERSITY MEDICAL CENTER   (United States)

Author keywords

Alternative splicing; Pre mRNAs; Splicing

Indexed keywords

CIS ACTING ELEMENT; TRANS ACTING FACTOR;

ALTERNATIVE RNA SPLICING; ARTICLE; BIOCHEMISTRY; CELL LINE; EXON; GENETICS; HUMAN; IMMUNOPRECIPITATION; IN VITRO STUDY; IN VIVO STUDY; LABORATORY; METHODOLOGY; NONHUMAN; PRIORITY JOURNAL; TISSUE CULTURE; ULTRAVIOLET RADIATION;

ALTERNATIVE SPLICING; ANIMALS; CELLS, CULTURED; COMPUTATIONAL BIOLOGY; DNA SHUFFLING; HUMANS; MOLECULAR BIOLOGY; RNA;

EID: 27944457197     PISSN: 10462023     EISSN: 10959130     Source Type: Journal    
DOI: 10.1016/j.ymeth.2005.10.001     Document Type: Article

References (18)

1. D.L. Black Mechanisms of alternative pre-messenger RNA splicing Annu. Rev. Biochem. 72 2003 291 336
2. B. Modrek, and C.J. Lee Alternative splicing in the human, mouse and rat genomes is associated with an increased frequency of exon creation and/or loss Nat. Genet. 34 2 2003 177 180
3. J.M. Johnson Genome-wide survey of human alternative pre-mRNA splicing with exon junction microarrays Science 302 5653 2003 2141 2144
4. R. Sorek, R. Shamir, and G. Ast How prevalent is functional alternative splicing in the human genome? Trends Genet. 20 2 2004 68 71
5. A. Resch Evidence for a subpopulation of conserved alternative splicing events under selection pressure for protein reading frame preservation Nucleic Acids Res. 32 4 2004 1261 1269
6. J.F. Caceres, and A.R. Kornblihtt Alternative splicing: multiple control mechanisms and involvement in human disease Trends Genet. 18 4 2002 186 193
7. L. Cartegni, S.L. Chew, and A.R. Krainer Listening to silence and understanding nonsense: exonic mutations that affect splicing Nat. Rev. Genet. 3 4 2002 285 298
8. N.A. Faustino, and T.A. Cooper Pre-mRNA splicing and human disease Genes Dev. 17 4 2003 419 437
9. K. Musunuru Cell-specific RNA-binding proteins in human disease Trends Cardiovasc. Med. 13 5 2003 188 195
10. X. Roca, R. Sachidanandam, and A.R. Krainer Intrinsic differences between authentic and cryptic 5′ splice sites Nucleic Acids Res. 31 21 2003 6321 6333
11. M.A. Garcia-Blanco, A.P. Baraniak, and E.L. Lasda Alternative splicing in disease and therapy Nat. Biotechnol. 22 5 2004 535 546
12. A.C. Goldstrohm, A.L. Greenleaf, and M.A. Garcia-Blanco Co-transcriptional splicing of pre-messenger RNAs: considerations for the mechanism of alternative splicing Gene 277 1-2 2001 31 47
13. T. Maniatis, and R. Reed An extensive network of coupling among gene expression machines Nature 416 6880 2002 499 506
14. P.J. Paddison A resource for large-scale RNA-interference-based screens in mammals Nature 428 6981 2004 427 431
15. S. Mili, and J.A. Steitz Evidence for reassociation of RNA-binding proteins after cell lysis: implications for the interpretation of immunoprecipitation analyses RNA 10 11 2004 1692 1694
16. T.W. Cline Maternal and zygotic sex-specific gene interactions in Drosophila melanogaster Genetics 96 4 1980 903 926
17. L.R. Bell Sex-lethal, a Drosophila sex determination switch gene, exhibits sex-specific RNA splicing and sequence similarity to RNA binding proteins Cell 55 6 1988 1037 1046
18. R.N. Kanadia A muscleblind knockout model for myotonic dystrophy Science 302 5652 2003 1978 1980