Identification of σv-dependent genes of Bacillus subtilis

FEMS Microbiology Letters

Volumn 253, Issue 2, 2005, Pages 221-229

  Zellmeier, Stephan ^a   Hofmann, Claudia ^a   Thomas, Sylvia ^a   Wiegert, Thomas ^a   Schumann, Wolfgang ^a  

^a UNIVERSITY OF BAYREUTH   (Germany)

Author keywords

Anti sigma factor; DNA macroarray; ECF sigma factor

Indexed keywords

SIGMA FACTOR;

ARTICLE; BACILLUS SUBTILIS; BACTERIAL GENE; CONTROLLED STUDY; DNA MICROARRAY; GENE CONTROL; GENE IDENTIFICATION; GENE INDUCTION; GENE LOCATION; GENE SEQUENCE; NONHUMAN; NORTHERN BLOTTING; PRIORITY JOURNAL; PROMOTER REGION;

BACILLUS SUBTILIS; BACTERIAL PROTEINS; BASE SEQUENCE; CONSENSUS SEQUENCE; GENE EXPRESSION REGULATION, BACTERIAL; MOLECULAR SEQUENCE DATA; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; OPERON; PROMOTER REGIONS (GENETICS); SIGMA FACTOR; TRANSCRIPTION, GENETIC;

BACILLUS SUBTILIS; BACTERIA (MICROORGANISMS);

EID: 27944446886     PISSN: 03781097     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.femsle.2005.09.056     Document Type: Article

References (33)

1. G. Storz, and R. Hengge-Aronis Bacterial Stress Responses 2000 American Society for Microbiology Washington, DC
2. J. Errington Bacillus subtilis sporulation: regulation of gene expression and control of morphogenesis Microbiol. Rev. 57 1993 1 33
3. W.G. Haldenwang The sigma factors of Bacillus subtilis Microbiol. Rev. 59 1995 1 30
4. T.L. Raivio, and T.J. Silhavy Periplasmic stress and ECF sigma factors Annu. Rev. Microbiol. 55 2001 591 624
5. J.D. Helmann The extracytoplasmic function (ECF) sigma factors Adv. Microb. Physiol. 46 2002 47 110
6. M.A. Lonetto, K.L. Brown, K.E. Rudd, and M.J. Buttner Analysis of the Streptomyces coelicolor sigE gene reveals the existence of a subfamily of eubacterial RNA polymerase factors involved in the regulation of extracytoplasmic functions Proc. Natl. Acad. Sci. USA 91 1994 7573 7577
7. Kunst, F., Ogasawara, N., Moszer, I. and 148 other authors. (1997) The complete genome sequence of the Gram-positive bacterium Bacillus subtilis. Nature 390, 249-256.
8. D. Missiakas, and S. Raina The extracytoplasmic function sigma factors: role and regulation Mol. Microbiol. 28 1998 1059 1066
9. M, an ECF RNA polymerase sigma factor of Bacillus subtilis 168, is essential for growth and survival in high concentrations of salt Mol. Microbiol. 32 1999 41 50
10. M regulons Mol. Microbiol. 45 2002 1267 1276
11. P.D. Thackray, and A. Moir SigM, an extracytoplasmic function sigma factor of Bacillus subtilis, is activated in response to cell wall antibiotics, ethanol, heat, acid, and superoxide stress J. Bacteriol. 185 2003 3491 3498
12. M. Cao, C.M. Moore, and J.D. Helmann Bacillus subtilis paraquat resistance is directed by sigma(M), an extracytoplasmic function sigma factor, and conferred by YqjL and BcrC J. Bacteriol. 187 2005 2948 2956
13. W regulon Mol. Microbiol. 41 2001 59 71
14. A. Petersohn, M. Brigulla, S. Haas, J.D. Hoheisel, U. Völker, and M. Hecker Global analysis of the general stress response of Bacillus subtilis J. Bacteriol. 183 2001 5617 5631
15. X factor using a consensus-directed search J. Mol. Biol. 279 1998 165 173
16. X regulon J. Bacteriol. 180 1998 3765 3770
17. W factors in Bacillus subtilis J. Bacteriol. 182 2000 5202 5210
18. X factor regulates modification of the cell envelope and resistance to cationic antimicrobial peptides J. Bacteriol. 186 2004 1136 1146
19. S. Tojo, M. Matsunaga, T. Matsumoto, C.M. Kang, H. Yamaguchi, K. Asai, Y. Sadaie, K. Yoshida, and Y. Fujita Organization and expression of the Bacillus subtilis sigY operon J. Biochem. 134 2003 935 946
20. M.J. Horsburgh, P.D. Thackray, and A. Moir Transcriptional responses during outgrowth of Bacillus subtilis endospores Microbiology 147 2001 2933 2941
21. K. Asai, H. Yamaguchi, C.M. Kang, K. Yoshida, Y. Fujita, and Y. Sadaie DNA microarray analysis of Bacillus subtilis sigma factors of extracytoplasmic function family FEMS Microbiol. Lett. 220 2003 155 160
22. M. Yoshimura, K. Asai, Y. Sadaie, and H. Yoshikawa Interaction of Bacillus subtilis extracytoplasmic function (ECF) sigma factors with the N-terminal regions of their potential anti-sigma factors Microbiology 150 2004 591 599
23. J. Sambrook, and D.W. Russell Molecular Cloning. A Laboratory Manual 2001 Cold Spring Harbor Laboratory Press Cold Spring Harbor, New York
24. M. Kaltwasser, T. Wiegert, and W. Schumann Construction and application of epitope- and GFT-tagging integration vectors for Bacillus subtilis Appl. Environ. Microbiol. 68 2001 2624 2628
25. A. Mogk, G. Homuth, C. Scholz, L. Kim, F.X. Schmid, and W. Schumann The GroE chaperonin machine is a major modulator of the CIRCE heat shock regulon of Bacillus subtilis EMBO J. 16 1997 4579 4590
26. N.C. Hauser, M. Vingron, M. Schneider, K. Hellmuth, K.D. Entian, and J.D. Hoheisel Transcriptional profiling on all open reading frames of Saccharomyces cerevisiae Yeast 14 1998 1209 1221
27. M. Wetzstein, U. Völker, J. Dedio, S. Löbau, U. Zuber, M. Schiesswohl, C. Herget, M. Hecker, and W. Schumann Cloning, sequencing, and molecular analysis of the dnaK locus from Bacillus subtilis J. Bacteriol. 174 1992 3300 3310
28. M. Cao, and J.D. Helmann Regulation of the Bacillus subtilis bcrC bacitracin resistance gene by two extracytoplasmic function σ factors J. Bacteriol. 184 2002 6123 6129
29. Bernard, R., El Ghachi, M., Mengin-Lecreux, D., Chippaux, M., and Denizot, F. BrcC from Bacillus subtilis acts as an undecaprenyl pyrophosphate phosphatase in bacitracin resistance. J. Biol. Chem. 280, 28852-28857.
30. A. Benachour, C. Muller, M. Dabrowski-Coton, Y. Le Breton, J.C. Giard, A. Rincé, Y. Auffray, and A. Hartke The Enterococcus faecalis SigV protein is an extracytoplasmic function sigma factor contributing to survival following heat, acid, and ethanol treatments J. Bacteriol. 187 2005 1022 1035
31. H. Saito, T. Shibata, and T. Ando Mapping of genes determining nonpermissiveness and host-specific restriction to bacteriophages in Bacillus subtilis Marburg. Mol. Gen. Genet. 170 1979 117 122
32. W- controlled pbpE gene, resulting in filamentous growth of Bacillus subtilis J. Bacteriol. 185 2003 973 982
33. F. Bolivar, R. Rodriquez, M. Betlach, and H. Boyer Construction and characterization of new cloning vehicles I: ampicillin-resistant derivatives of the plasmid pMB9 Gene 2 1977 75 93