Different expression patterns of duplicated PHANTASTICA-like genes in Lotus japonicus suggest their divergent functions during compound leaf development

Cell Research

Volumn 15, Issue 8, 2005, Pages 665-677

  Luo, Jiang Hong ^a   Yan, Jun ^a   Weng, Lin ^a   Yang, Jun ^a   Zhao, Zhong ^c   Chen, Jiang Hua ^a   Hu, Xiao He ^a   Luo, Da ^a,b  

^a INSTITUTE OF PLANT PHYSIOLOGY AND ECOLOGY   (China)

^b SHANGHAI JIAO TONG UNIVERSITY   (China)

^c FUDAN UNIVERSITY   (China)

Author keywords

Adaxial identity; Gene duplication; LjPHANa; LjPHANb; Lotus japonicus; Rel mutants

Indexed keywords

HOMEODOMAIN PROTEIN; KNOX1 PROTEIN, PLANT; VEGETABLE PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; CHEMISTRY; DUPLICATE GENE; GENE; GENE EXPRESSION REGULATION; GENETICS; GENOME; GROWTH, DEVELOPMENT AND AGING; LOTUS; METABOLISM; MOLECULAR EVOLUTION; MOLECULAR GENETICS; PHENOTYPE; PLANT LEAF; SEQUENCE HOMOLOGY; TRANSGENIC PLANT; ULTRASTRUCTURE;

AMINO ACID SEQUENCE; EVOLUTION, MOLECULAR; GENE EXPRESSION REGULATION, PLANT; GENES, DUPLICATE; GENES, PLANT; GENOME, PLANT; HOMEODOMAIN PROTEINS; LOTUS; MOLECULAR SEQUENCE DATA; PHENOTYPE; PLANT LEAVES; PLANT PROTEINS; PLANTS, GENETICALLY MODIFIED; SEQUENCE HOMOLOGY;

LOTUS CORNICULATUS VAR. JAPONICUS;

EID: 27944441744     PISSN: 10010602     EISSN: None     Source Type: Journal    
DOI: 10.1038/sj.cr.7290336     Document Type: Article

References (42)

1. Bharathan G, Sinha NR. The regulation of compound leaf development. Plant Physiol 2001; 127:1533-8.
2. Micol J, Hake S. The development of plant leaves. Plant Physiol 2003; 131:389-94.
3. Bowman JL, Eshed Y, Baum SF. Establishment of polarity in angiosperm lateral organs. Trends Genet 2002; 18:134-41.
4. Bohmert K, Camus I, Bellini C, et al. AGO1 defines a novel locus of Arabidopsis controlling leaf development. EMBO J 1998; 17: 170-80.
5. Waites R, Selvadurai HRN, Oliver IR, Hudson A. The Phantastica gene encodes a MYB transcription factor involved in growth and dorsoventrality of lateral organs in Antirrhinum. Cell 1998; 93: 779-89.
6. Lynn K, Fernandez A, Aida M, et al. The PINHEAD/ZWILLE gene acts pleiotropically in Arabidopsis development and has overlapping functions with the ARGONAUTE1 gene. Development 1999; 126:469-81.
7. McConnell JR, Emery J, Eshed Y, et al. Role of PHABULOSA and PHAVOLUTA in determining radial patterning in shoots. Nature 2001; 411:709-13.
8. Siegfried KR, Eshed Y, Baum SF, et al. Members of the YABBY gene family specify abaxial cell fate in Arabidopsis. Development 1999; 126:4117-28.
9. Kerstetter RA, Bollman K, Taylor RA, et al. KANADI regulates organ polarity in Arabidopsis. Nature 2001; 411:706-8.
10. Waites R, Hudson A. Phantastica: a gene required for dorsoventrality of leaves in Antirrhnum majus. Development 1995; 121: 2143-54.
11. Tsiantis M, Schneeberger R, Golz JF, et al. The maize rough sheath2 gene and leaf development programs in monocot and dicot plants. Science 1999; 284:154-6.
12. Timmermans MCP, Hudson A, Becraft PW, Nelson T. Rough sheath2: A Myb protein that represses knox homeobox genes in maize lateral organ primordia. Science 1999; 284:151-3.
13. Byrne ME, Barley R, Curtis M, et al. Asymmetric leaves1 mediates leaf patterning and stem cell function in Arabidopsis. Nature 2000; 408:967-71.
14. Xu L, Xu Y, Dong A, et al. Novel as1 and as2 defects in leaf adaxial-abaxial polarity reveal the requirement for ASYMMETRIC LEAVES1 and 2 and ERECTA functions in specifying leaf adaxial identity. Development 2003; 130:4097-107.
15. Schneeberger R, Tsiantis M, Freeling M, Langdale JA. The rough sheath2 gene negatively regulates homeobox gene expression during maize leaf development. Development 1998; 125:2857-65.
16. McHale NA, Koning RE. PHANTASTICA regulates development of the adaxial mesophyll in Nicotiana leaves. Plant Cell 2004; 16: 1251-62.
17. Ori N, Eshed Y, Chuck G, et al. Mechanisms that control knox gene expression in the Arabidopsis shoot. Development 2000; 127:5523-32.
18. Harrison CJ, Corley SB, Moylan EC. Independent recruitment of a conserved developmental mechanism during leaf evolution. Nature 2005; 434:509-14.
19. Kim M, McCormick S, Timmermans M, Sinha N. The expression domain of PHANTASTICA determines leaflet placement in compound leaves. Nature 2003; 424:438-43.
20. Lincoln C, Long J, Yamaguchi J, et al. A knotted1-like homeobox gene in Arabidopsis is expressed in the vegetative meristem and dramatically alters leaf morphology when overexpressed in transgenic plants. Plant Cell 1994; 6:1859-76.
21. Hareven D, Gutfinger T, Parnis A. The making of a compound leaf: genetic manipulation of leaf architecture in tomato. Cell 1996; 84:735-44.
22. Parnis A, Cohen O, Gutfinger T, et al. The dominant developmental mutants of tomato, Mouse-ear and Curl, are associated with distinct modes of abnormal transcriptional regulation of a Knotted gene. Plant Cell 1997; 9:2143-58.
23. Janssen BJ, Lund L, Sinha N. Overexpression of a homeobox gene, LeT6, reveals indeterminate features in the tomato compound leaf. Plant Physiol 1998; 117:771-86.
24. Hofer J, Gourlay C, Michael A, Ellis TH. Expression of a class 1 knotted1-like homeobox gene is down-regulated in pea compound leaf primordia. Plant Mol Biol 2001; 45:387-98.
25. Bharathan G, Goliber TE, Moore C, et al. Homologies in leaf form inferred from KNOXI gene expression during development. Science 2002; 296:1858-60.
26. Koltai H, Bird DM. Epistatic repression of PHANTASTICA and class I KNOTTED genes is uncoupled in tomato. Plant J 2000; 22:455-9.
27. Kim M, Pham T, Hamidi A, et al. Reduced leaf complexity in tomato wiry mutants suggests a role for PHAN and KNOX gene in generating compound leaves. Development 2003; 130:4405-15.
28. Hofer J, Turner L, Hellens R, et al. UNIFOLIATA regulates leaf and flower morphogenesis in pea. Curr Biol 1997; 7:581-7.
29. Taylor S, Hofer J, Murfet I. Stamina pistilloida, the Pea Ortholog of Fim and UFO, is required for normal development of flowers, inflorescences, and leaves. Plant Cell 2001; 13:31-46.
30. Tattersall AD, Turner L, Knox MR, et al. The Mutant crispa Reveals Multiple Roles for PHANTASTICA in Pea Compound Leaf Development. Plant cell 2005; 17:1046-60.
31. Hall TA. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl Acids Symp Ser 1999; 41:95-8.
32. Thompson JD, Gibson TJ, Plewniak F, et al. The CLUSTALX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 1997; 25: 4876-82
33. Page RDM. TREEVIEW: An application to display phylogenetic trees on personal computers. Comput Appl Biosci 1996; 12: 357-8.
34. Alvarez J, Guli CL, Lu XH, Smyth DR. Terminal flower: a gene affecting inflorescence development in Arabidopsis thaliana. Plant J 1992; 2:103-16.
35. Jackson D, Veit B, Hake S. Expression of maize KNOTTED1 related homeobox genes in the shoot apical meristem predicts patterns of morphogenesis in the vegetative shoot. Development 1994; 120:405-13.
36. Bradley D, Carpenter R, Sommer H, et al. Complementary floral homeotic phenotypes result from opposite orientations of a transposon at the plena locus of Antirrhinum. Cell 1993; 72:85-95.
37. Theodoris G, Inada N, Freeling M. Conservation and molecular dissection of ROUGH SHEATH2 and ASYMMETRIC LEAVES1 function in leaf development. Proc Natl Acad Sci U S A 2003; 100:6837-42.
38. Nakamura Y, Kaneko T, Asamizu E, et al. Structural analysis of a Lotus japonicus genome. II. Sequence features and mapping of sixty-five TAC clones which cover the 6.5 Mb regions of the genome. DNA Res 2002; 9:63-70.
39. Perry JA, Wang TL, Welham TJ, et al. A tilling reverse genetics tool and a web-accessible collection of mutants of the legume Lotus japonicus. Plant Physiol 2003; 131:866-71.
40. Zhang J. Evolution by gene duplication: an update. Trends Ecol Evol 2003; 18:292-8.
41. Doebley J, Stec A, Hubbard L. The evolution of apical dominance in maize. Nature 1997, 386:485-8.
42. Wang RL, Stec A, Hey J, Lukens L, Doebley J. The limits of selection during maize domestication. Nature, 1999, 398:236-9.