Adhaeribacter aquaticus gen. nov., sp. nov., a Gram-negative isolate from a potable water biofilm

International Journal of Systematic and Evolutionary Microbiology

Volumn 55, Issue 2, 2005, Pages 821-829

  Rickard, A H ^a   Stead, A T ^a   O'May, G A ^b   Lindsay, S ^a   Banner, M ^a   Handley, P S ^a   Gilbert, Peter ^a  

^a UNIVERSITY OF MANCHESTER   (United Kingdom)

^b UNIVERSITY OF DUNDEE   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL RNA; FATTY ACID; RNA 16S;

ADHAERIBACTER AQUATICUS; AEROBIC BACTERIUM; ANTIBIOTIC SENSITIVITY; ARTICLE; BACTERIAL STRAIN; BACTERIUM CULTURE; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATION; BIOFILM; CHEMOTAXONOMY; FATTY ACID ANALYSIS; FLEXIBACTERACEAE; GENE SEQUENCE; GENETIC ANALYSIS; GENOTYPE; GRAM NEGATIVE AEROBIC RODS AND COCCI; GRAM NEGATIVE BACTERIUM; NONHUMAN; NUCLEOTIDE SEQUENCE; PHASE CONTRAST MICROSCOPE; PHENOTYPE; PHYLOGENY; PLASMOLYSIS; PRIORITY JOURNAL; RNA SEQUENCE; SEQUENCE ANALYSIS; STRAIN DIFFERENCE; TRANSMISSION ELECTRON MICROSCOPY; WATER SUPPLY;

BASE COMPOSITION; BIOFILMS; DNA, BACTERIAL; DNA, RIBOSOMAL; DRINKING; FATTY ACIDS; FLEXIBACTERACEAE; FRESH WATER; GENES, RRNA; GENOTYPE; MOLECULAR SEQUENCE DATA; PHENOTYPE; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA;

BACTERIA (MICROORGANISMS); BACTEROIDES; CYTOPHAGA; FLAVOBACTERIUM; FLEXIBACTERACEAE; NEGIBACTERIA;

EID: 16844379251     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.63337-0     Document Type: Article

References (46)

1. Battin, T. J., Wille, A., Sattler, B. & Psenner, R. (2001). Phylogenetic and functional heterogeneity of sediment biofilms along environmental gradients in a glacial stream. Appl Environ Microbiol 67, 799-807.
2. Bott, T. R. & Grant, D. M. (2001). Biofilms in flowing systems. Methods Enzymol 337, 88-103.
3. Bowman, J. P., Nichols, C. M. & Gibson, J. A. (2003). Algoriphagus ratkowskyi gen. nov., sp. nov., Brumimicrobium glaciale gen. nov., sp. nov., Cryomorpha ignava gen. nov., sp. nov. and Crocinitomix catalasitica gen. nov., sp. nov., novel flavobacteria isolated from various polar habitats. Int J Syst Evol Microbiol 53, 1343-1355.
4. Buczolits, S., Denner, E. B., Vybiral, D., Wieser, M., Kämpfer, P. & Busse, H. J. (2002). Classification of three airborne bacteria and proposal of Hymenobacter aerophilus sp. nov. Int J Syst Evol Microbiol 52, 445-456.
5. Burke, V., Robinson, J., Gracey, M., Peterson, D. & Partridge, K. (1984). Isolation of Aeromonas hydrophila from a metropolitan water supply: seasonal correlation with clinical isolates. Appl Environ Microbiol 48, 361-366.
6. Chun, J. & Goodfellow, M. (1995). A phylogenetic analysis of the genus Nocardia with 16S rRNA gene sequences. Int J Syst Bacteriol 45, 240-245.
7. Cohen-Bazire, G., Sistrom, W. R. & Stanier, R. Y. (1957). Kinetic studies of pigment synthesis by non-sulfur purple bacteria. J Cell Physiol 49, 25-68.
8. Collins, M. D., Hutson, R. A., Grant, I. R. & Patterson, M. F. (2000). Phylogenetic characterization of a novel radiation-resistant bacterium from irradiated pork: description of Hymenobacter actinosclerus sp. nov. Int J Syst Evol Microbiol 50, 731-734.
9. Costerton, J. W., Lewandowski, Z., Caldwell, D. E., Korber, D. R. & Lappin-Scott, H. M. (1995). Microbial biofilms. Annu Rev Microbiol 49, 711-745.
10. Edwards, U., Rogall, T., Blocker, H., Emde, M. & Bottger, E. C. (1989). Isolation and direct complete nucleotide determination of entire genes. Characterization of a gene coding for 16S ribosomal RNA. Nucleic Acids Res 17, 7843-7853.
11. Eiler, A., Langenheder, S., Bertilsson, S. & Tranvik, L. J. (2003). Heterotrophic bacterial growth efficiency and community structure at different natural organic carbon concentrations. Appl Environ Microbiol 69, 3701-3709.
12. Flemming, H.-C., Wingender, J., Mayer, C., Korstgens, V. & Borchard, W. (2000). Cohesiveness in biofilm matrix polymers. In Community Structure and Co-operation in Biofilms (Society for General Microbiology Symposium 59), pp. 87-106. Edited by D. G. Allison, P. Gilbert, H. M. Lappin-Scott & M. Wilson. Cambridge: Cambridge University Press.
13. Garbeva, P., Overbeek, L. S., Vuurde, J. W. & Elsas, J. D. (2001). Analysis of endophytic bacterial communities of potato by plating and denaturing gradient gel electrophoresis (DGGE) of 16S rDNA based PCR fragments. Microb Ecol 41, 369-383.
14. Garrity, G. M. & Holt, J. G. (2001). The road map to the Manual. In Bergey's Manual of Systematic Bacteriology, 2nd edn, Vol. 1, pp. 119-166. Edited by D. R. Boone, R. W. Castenholz & G. M. Garrity. New York: Springer.
15. Ghanem, F. M., Ridpath, A. C., Moore, W. E. & Moore, L. V. (1991). Identification of Clostridium botulinum, Clostridium argentinense, and related organisms by cellular fatty acid analysis. J Clin Microbiol 29, 1114-1124.
16. Gilbert, P., Maira-Litran, T., McBain, A. J., Rickard, A. H. & Whyte, F. W. (2002). The physiology and collective recalcitrance of microbial biofilm communities. Adv Microb Physiol 46, 202-256.
17. Glockner, F. O., Amann, R., Alfreider, A., Pernthaler, J., Psenner, R., Trebesius, K. & Schleifer, K. H. (1996). An in situ hybridization protocol for detection and identification of planktonic bacteria. Syst Appl Microbiol 19, 403-406.
18. Handley, P. S., Carter, P. L., Wyatt, J. E. & Hesketh, L M. (1985). Surface structures (peritrichous fibrils and tufts of fibrils) found on Streptococcus sanguis strains may be related to their ability to coaggregate with other oral genera. Infect Immun 47, 217-227.
19. Hiorns, W. D., Methe, B. A., Nierzwicki-Bauer, S. A. & Zehr, J. P. (1997). Bacterial diversity in Adirondack mountain lakes as revealed by 16S rRNA gene sequences. Appl Environ Microbiol 63, 2957-2960.
20. Jukes, T. H. & Cantor, C. R. (1969). Evolution of protein molecules. In Mammalian Protein Metabolism, pp. 21-132, Edited by H. N. Munro. New York: Academic Press.
21. Junge, K., Eicken, H. & Deming, J. W. (2004). Bacteriol activity at -2 to -20 °C in Arctic wintertime sea ice. Appl Environ Microbiol 70, 550-557.
22. Kerr, C. J., Osborn, K. S., Rickard, A. H., Robson, G. D. & Handley, P. S. (2003). Biofilms in water distribution systems. In Water and Wastewater Engineering, pp. 757-776. Edited by D. Mara & N. J. Horan. London: Academic Press.
23. Kindaichi, T., Ito, T. & Okabe, S. (2004). Ecophysiological interaction between nitrifying bacteria and heterotrophic bacteria in autotrophic nitrifying biofilms as determined by microautoradiography-fluorescence in situ hybridization. Appl Environ Microbiol 70, 1641-1650.
24. Lane, D. L. (1991). 16S/23S rRNA sequencing. In Nucleic Acid Techniques in Bacterial Systematics, pp. 115-175. Edited by E. Stackebrandt & M. Goodfellow. Chichester: Wiley.
25. Lewin, R. A. (1969). A classification of flexibacteria. J Gen Microbiol 58, 189-206.
26. Lewin, R. A. & Lounsbery, D. M. (1969). Isolation, cultivation and characterisation of the flexibacteria. J Gen Microbiol 58, 145-170.
27. Mandel, M. & Marmur, J. (1968). Use of ultraviolet absorbance temperature profile for determining the guanine plus cytosine content of DNA. Methods Enzymol 12B, 195-206.
28. Norton, C. D. & LeChevallier, M. W. (2000). A pilot study of bacteriological population changes through potable water treatment and distribution. Appl Environ Microbiol 66, 268-276.
29. Pearson, W. R. & Lipman, D. J. (1988). Improved tools for biological sequence comparison. Proc Natl Acad Sci U S A 85 2444-2448.
30. Purevdorj, B., Costerton, J. W. & Stoodley, P. (2002). Influence of hydrodynamics and cell signalling on the structure and behaviour of Pseudomonas aeruginosa biofilms. Appl Environ Microbiol 68, 4457-4464.
31. Raj, H. D. & Maloy, S. R. (1990). Family Spirosomaceae: gram-negative ring-forming aerobic bacteria. Crit Rev Microbiol 17, 329-364.
32. Reasoner, D. J. & Geldreich, E. E. (1985). A new medium for the enumeration and subculture of bacteria from potable water. Appl Environ Microbiol 49, 1-7.
33. Reichenbach, H. (1992). The order Cytophagales. In The Prokaryotes, pp. 3631-3675. Edited by A. Balows, H. G. Trüper, M. Dworkin, W. Harder & K.-H. Schleifer. New York: Springer.
34. Rickard, A. H., McBain, A. J., Stead, A. T. & Gilbert, P. (2004). Effects of fluid shear force upon the diversity and species interactions within freshwater biofilms. Appl Environ Microbiol 70, 7426-7435.
35. Schmeisser, C., Stockigt, C., Raasch, C. & 8 other authors (2003). Metagenome survey of biofilms in drinking-water networks. Appl Environ Microbiol 69, 7298-7309.
36. Smibert, R. M. & Krieg, N. R. (1994). Phenotypic characterization. In Methods for General and Molecular Bacteriology pp. 607-654. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Kreig. Washington, DC: American Society for Microbiology.
37. Stackebrandt, E. & Goebel, B. M. (1994). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846-849.
38. Staley, J. T. & Gosink, I J. (1999). Poles apart: biodiversity and biogeography of sea ice bacteria. Annu Rev Microbiol 53, 189-215.
39. Steinert, M., Hentschel, U. & Hacker, J. (2002). Legionella pneumophila: an aquatic microbe goes astray. FEMS Microbiol Rev 26, 149-162.
40. Stoodley, P., Sauer, K., Davies, D. G. & Costerton, J. W. (2002). Biofilms as complex differentiated communities. Annu Rev Microbiol 56, 187-209.
41. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
42. Van de Peer, Y. & De Wachter, R. (1997). Construction of evolutionary distance trees with TREECON for Windows: accounting for variation in nucleotide substitution rate among sites. Comput Appl Biosci 13, 227-230.
43. Weisberg, W. G., Barns, S. M., Pelletier, D. A. & Lane, D. J. (1991). 16S ribosomal DNA amplification for phylogenetic study. J Bacteriol 173, 697-703.
44. Williams, M. M. & Braun-Howland, E. B. (2003). Growth of Escherichia coli in model distribution system biofilms exposed to hypochlorous acid or monochloramine. Appl Environ Microbiol 69, 5463-5471.
45. Yi, H. & Chun, J. (2004). Hongiella mannitolivorans gen. nov., sp. nov., Hongiella halophila sp. nov. and Hongiella ornithinivorans sp. nov., isolated from tidal flat sediment. Int J Syst Evol Microbiol 54, 157-162.
46. Zalmum, A. A., Marialegite, K. & Ghenghesh, K. S. (1998). Bacterial composition of the biofilm on the surface of course sediment of the Danube: with special reference to the clinically important bacteria. Arch Inst Pasteur Tunis 75, 205-209.