메뉴 건너뛰기




Volumn 61, Issue 5, 2005, Pages 620-626

Mitogenomic analyses place the gharial (Gavialis gangeticus) on the crocodile tree and provide pre-K/T divergence times for most crocodilians

Author keywords

Crocodylia; Mitochondrial DNA; Molecular dating; Phylogeny; Reptiles

Indexed keywords

ALLIGATOR; ARTICLE; GENE SEQUENCE; GENETIC VARIABILITY; GENOMICS; MITOCHONDRION; MORPHOLOGY; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; SURVIVAL;

EID: 27744569959     PISSN: 00222844     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00239-004-0336-9     Document Type: Article
Times cited : (70)

References (33)
  • 1
    • 0002367729 scopus 로고    scopus 로고
    • MOLPHY version 2.3: Programs for molecular phylogenetics based on maximum likelihood
    • Inst Stat Math, Tokyo
    • Adachi J, Hasegawa M (1996) MOLPHY version 2.3: Programs for molecular phylogenetics based on maximum likelihood. Inst Stat Math, Tokyo. Comput Sci Monogr 28:1-150
    • (1996) Comput Sci Monogr , vol.28 , pp. 1-150
    • Adachi, J.1    Hasegawa, M.2
  • 2
    • 0028110123 scopus 로고
    • Generic affinities among crocodilians as revealed by DNA fingerprinting with a Bkm-derived probe
    • USA
    • Aggarwal RK, Majumdar KC, Lang JW, Singh L (1994) Generic affinities among crocodilians as revealed by DNA fingerprinting with a Bkm-derived probe. Proc Natl Acad Sci USA 91:10601-10605
    • (1994) Proc Natl Acad Sci , vol.91 , pp. 10601-10605
    • Aggarwal, R.K.1    Majumdar, K.C.2    Lang, J.W.3    Singh, L.4
  • 3
    • 0035498870 scopus 로고    scopus 로고
    • Late Cretaceous relatives of rabbits, rodents, and other extant eutherian mammals
    • Archibald JD, Averianov AO, Ekdale EG (2001) Late Cretaceous relatives of rabbits, rodents, and other extant eutherian mammals. Nature 414:62-65
    • (2001) Nature , vol.414 , pp. 62-65
    • Archibald, J.D.1    Averianov, A.O.2    Ekdale, E.G.3
  • 4
    • 0033937019 scopus 로고    scopus 로고
    • The complete mitochondrial genome of the sperm whale and the establishment of a new molecular reference for estimating eutherian divergence dates
    • Arnason U, Gullberg A, Gretarsdottir S, Ursing B, Janke A (2000) The complete mitochondrial genome of the sperm whale and the establishment of a new molecular reference for estimating eutherian divergence dates. J Mol Evol 50:569-578
    • (2000) J Mol Evol , vol.50 , pp. 569-578
    • Arnason, U.1    Gullberg, A.2    Gretarsdottir, S.3    Ursing, B.4    Janke, A.5
  • 5
    • 0025287317 scopus 로고
    • Phylogeny of the major tetrapod groups: Morphological data and divergence dates
    • Benton MJ (1990) Phylogeny of the major tetrapod groups: morphological data and divergence dates. J Mol Evol 30:409-424
    • (1990) J Mol Evol , vol.30 , pp. 409-424
    • Benton, M.J.1
  • 6
    • 0031224811 scopus 로고    scopus 로고
    • Morphology, fossils, divergence timing, and the phylogenetic relationships of Gavialis
    • Brochu CA (1997) Morphology, fossils, divergence timing, and the phylogenetic relationships of Gavialis. Syst Biol 46:479-522
    • (1997) Syst Biol , vol.46 , pp. 479-522
    • Brochu, C.A.1
  • 7
    • 0347093277 scopus 로고    scopus 로고
    • Patterns of calibration age sensitivity with quartet dating methods
    • Brochu CA (2004) Patterns of calibration age sensitivity with quartet dating methods. J Paleont 78:7-30
    • (2004) J Paleont , vol.78 , pp. 7-30
    • Brochu, C.A.1
  • 8
    • 0030621127 scopus 로고    scopus 로고
    • Mass survival of birds across the Cretaceous-Tertiary boundary: Molecular evidence
    • Cooper A, Penny D (1997) Mass survival of birds across the Cretaceous-Tertiary boundary: molecular evidence. Science 275:1109-1113
    • (1997) Science , vol.275 , pp. 1109-1113
    • Cooper, A.1    Penny, D.2
  • 9
    • 0000927769 scopus 로고
    • Biochemical and immunological systematics of the order Crocodilia
    • Hecht MK, Wallace B, Prance GH (eds). Plenum, New York
    • Densmore LD (1983) Biochemical and immunological systematics of the order Crocodilia. In: Hecht MK, Wallace B, Prance GH (eds) Evolutionary biology, Vol 16. Plenum, New York, pp 397-465
    • (1983) Evolutionary Biology , vol.16 , pp. 397-465
    • Densmore, L.D.1
  • 10
    • 0001340979 scopus 로고
    • The systematics and evolution of the Crocodilia as suggested by restriction endonuclease analysis of mitochondrial and nuclear ribosomal DNA
    • Densmore LD, White PS (1991) The systematics and evolution of the Crocodilia as suggested by restriction endonuclease analysis of mitochondrial and nuclear ribosomal DNA. Copeia 1991:602-615
    • (1991) Copeia , vol.1991 , pp. 602-615
    • Densmore, L.D.1    White, P.S.2
  • 11
    • 0034894278 scopus 로고    scopus 로고
    • PAL: An object-oriented programming library for molecular evolution and phylogenetics
    • Drummond A, Strimmer K (2001) PAL: an object-oriented programming library for molecular evolution and phylogenetics. Bioinformatics 17:662-663
    • (2001) Bioinformatics , vol.17 , pp. 662-663
    • Drummond, A.1    Strimmer, K.2
  • 12
    • 7144223368 scopus 로고
    • University of Washington, Seattle, and University Herbarium, University of California, Berkeley
    • Felsenstein J (1993) Phylogenetic Inference Programs (PHYLIP). University of Washington, Seattle, and University Herbarium, University of California, Berkeley
    • (1993) Phylogenetic Inference Programs (PHYLIP)
    • Felsenstein, J.1
  • 13
    • 0027616543 scopus 로고
    • Alignment-ambiguous nucleotide site and the exclusion of systematic data
    • Gatesy J, DeSalle R, Wheeler WC (1993) Alignment-ambiguous nucleotide site and the exclusion of systematic data. Mol Phylogenet Evol 2:152-157
    • (1993) Mol Phylogenet Evol , vol.2 , pp. 152-157
    • Gatesy, J.1    DeSalle, R.2    Wheeler, W.C.3
  • 14
    • 0038785934 scopus 로고    scopus 로고
    • Combined support for wholesale taxic atavism in gavialine crocodylians
    • Gatesy J, Amato G, Norell M, DeSalle R, Hayashi C (2003) Combined support for wholesale taxic atavism in gavialine crocodylians. Syst Biol 52:403-422
    • (2003) Syst Biol , vol.52 , pp. 403-422
    • Gatesy, J.1    Amato, G.2    Norell, M.3    DeSalle, R.4    Hayashi, C.5
  • 15
    • 2442449251 scopus 로고    scopus 로고
    • Inconsistencies in arguments for the supertree approach: Supermatrices versus supertrees of Crocodylia
    • Gatesy J, Baker RH, Hayashi C (2004) Inconsistencies in arguments for the supertree approach: supermatrices versus supertrees of Crocodylia. Syst Biol 53:342-355
    • (2004) Syst Biol , vol.53 , pp. 342-355
    • Gatesy, J.1    Baker, R.H.2    Hayashi, C.3
  • 18
    • 0034849408 scopus 로고    scopus 로고
    • MRBAYES: Bayesian inference of phylogenetic trees
    • Huelsenbeck JP, Ronquist F (2001) MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17:754-755
    • (2001) Bioinformatics , vol.17 , pp. 754-755
    • Huelsenbeck, J.P.1    Ronquist, F.2
  • 19
    • 0030778833 scopus 로고    scopus 로고
    • The complete mitochondrial genome of Alligator mississippiensis and the separation between recent archosauria (birds and crocodiles)
    • Janke A, Arnason U (1997) The complete mitochondrial genome of Alligator mississippiensis and the separation between recent archosauria (birds and crocodiles). Mol Biol Evol 14:1266-1272
    • (1997) Mol Biol Evol , vol.14 , pp. 1266-1272
    • Janke, A.1    Arnason, U.2
  • 21
    • 0035932330 scopus 로고    scopus 로고
    • The mitochondrial genomes of a lizard, Iguana iguana, and the caiman, Caiman crocodylus: Implications for amniotes phylogeny
    • Janke A, Erpenbeck D, Nielsson M, Arnason U (2001) The mitochondrial genomes of a lizard, Iguana iguana, and the caiman, Caiman crocodylus: implications for amniotes phylogeny. Proc Roy Soc Lond B 268:623-631
    • (2001) Proc Roy Soc Lond B , vol.268 , pp. 623-631
    • Janke, A.1    Erpenbeck, D.2    Nielsson, M.3    Arnason, U.4
  • 23
    • 0032580152 scopus 로고    scopus 로고
    • A molecular timescale for vertebrate evolution
    • Kumar S, Hedges SB (1998) A molecular timescale for vertebrate evolution. Nature 392:917-920
    • (1998) Nature , vol.392 , pp. 917-920
    • Kumar, S.1    Hedges, S.B.2
  • 24
    • 4744344187 scopus 로고    scopus 로고
    • Marsupial relationships and a timeline for marsupial radiation in South Gondwana
    • Nilsson AM, Gullberg A, Spencer P, Arnason U, Janke A (2004) Marsupial relationships and a timeline for marsupial radiation in South Gondwana. Gene 340:189-196
    • (2004) Gene , vol.340 , pp. 189-196
    • Nilsson, A.M.1    Gullberg, A.2    Spencer, P.3    Arnason, U.4    Janke, A.5
  • 25
    • 0000185218 scopus 로고
    • The higher level relationships of extant crocodylia
    • Norell MA (1989) The higher level relationships of extant crocodylia. J Herpetol 23:325-335
    • (1989) J Herpetol , vol.23 , pp. 325-335
    • Norell, M.A.1
  • 26
    • 0030311233 scopus 로고    scopus 로고
    • Data set incongruence and the phylogeny of crocodilians
    • Poe S (1996) Data set incongruence and the phylogeny of crocodilians. Syst Biol 45:393-414
    • (1996) Syst Biol , vol.45 , pp. 393-414
    • Poe, S.1
  • 27
    • 0030124093 scopus 로고    scopus 로고
    • Mitochondrial gene order adjacent to the control region in crocodile, turtle and tuatara
    • Quinn TW, Mindell DP (1996) Mitochondrial gene order adjacent to the control region in crocodile, turtle and tuatara. Mol Phylogenet Evol 5:344-351
    • (1996) Mol Phylogenet Evol , vol.5 , pp. 344-351
    • Quinn, T.W.1    Mindell, D.P.2
  • 28
    • 0036135468 scopus 로고    scopus 로고
    • Estimating absolute rates of molecular evolution and divergence times: A penalized likelihood approach
    • Sanderson MJ (2002) Estimating absolute rates of molecular evolution and divergence times: a penalized likelihood approach. Mol Biol Evol 19:101-109
    • (2002) Mol Biol Evol , vol.19 , pp. 101-109
    • Sanderson, M.J.1
  • 29
    • 0032766857 scopus 로고    scopus 로고
    • Multiple comparisons of log-likelihoods with applications to phylogenetic inference
    • Shimodaira H, Hasegawa M (1999) Multiple comparisons of log-likelihoods with applications to phylogenetic inference. Mol Biol Evol 16:1114-1116
    • (1999) Mol Biol Evol , vol.16 , pp. 1114-1116
    • Shimodaira, H.1    Hasegawa, M.2
  • 30
    • 0029836454 scopus 로고    scopus 로고
    • Quartet puzzling: A quartet maximum likelihood method for reconstructing tree topologies
    • Strimmer K, von Haeseler A (1996) Quartet puzzling: a quartet maximum likelihood method for reconstructing tree topologies. Mol Biol Evol 13:964-969
    • (1996) Mol Biol Evol , vol.13 , pp. 964-969
    • Strimmer, K.1    Von Haeseler, A.2
  • 31
    • 0027157960 scopus 로고
    • Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees
    • Tamura K, Nei M (1993) Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol Biol Evol 10:512-526
    • (1993) Mol Biol Evol , vol.10 , pp. 512-526
    • Tamura, K.1    Nei, M.2
  • 32
    • 0001836592 scopus 로고
    • The evolution of the Crocodilia: A conflict between morphological and biochemical data
    • Tarsitano SF, Frey E, Riess J (1989) The evolution of the Crocodilia: a conflict between morphological and biochemical data. Am Zool 29:843-856
    • (1989) Am Zool , vol.29 , pp. 843-856
    • Tarsitano, S.F.1    Frey, E.2    Riess, J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.