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Volumn 343, Issue 2, 2005, Pages 179-189

Population structure within lineages of Wheat streak mosaic virus derived from a common founding event exhibits stochastic variation inconsistent with the deterministic quasi-species model

Author keywords

Genetic bottlenecks; Genetic drift; Population genetics; Potyvirus; Tritimovirus

Indexed keywords

VIRUS PROTEIN;

EID: 27744473493     PISSN: 00426822     EISSN: 10960341     Source Type: Journal    
DOI: 10.1016/j.virol.2005.08.037     Document Type: Article
Times cited : (29)

References (46)
  • 1
    • 0034532485 scopus 로고    scopus 로고
    • Monte Carlo evaluation of the likelihood for Ne from temporally-spaced samples
    • E.C. Anderson, E.G. Williamson, and E.A. Thompson Monte Carlo evaluation of the likelihood for Ne from temporally-spaced samples Genetics 156 2000 2109 2118
    • (2000) Genetics , vol.156 , pp. 2109-2118
    • Anderson, E.C.1    Williamson, E.G.2    Thompson, E.A.3
  • 2
    • 0032781411 scopus 로고    scopus 로고
    • Reinventing plant virus movement
    • J.C. Carrington Reinventing plant virus movement Trends Microbiol. 7 1999 312 313
    • (1999) Trends Microbiol. , vol.7 , pp. 312-313
    • Carrington, J.C.1
  • 3
    • 0032761880 scopus 로고    scopus 로고
    • Fully biologically active in vitro transcripts of the eriophyid mite-transmitted wheat streak mosaic tritimovirus
    • I.-R. Choi, R. French, G.L. Hein, and D.C. Stenger Fully biologically active in vitro transcripts of the eriophyid mite-transmitted wheat streak mosaic tritimovirus Phytopathology 89 1999 11182 11185
    • (1999) Phytopathology , vol.89 , pp. 11182-11185
    • Choi, I.-R.1    French, R.2    Hein, G.L.3    Stenger, D.C.4
  • 4
    • 0035088670 scopus 로고    scopus 로고
    • Contributions of genetic drift and negative selection on the evolution of three strains of wheat streak mosaic tritimovirus
    • I.-R. Choi, J.S. Hall, M. Henry, L. Zhang, G.L. Hein, R. French, and D.C. Stenger Contributions of genetic drift and negative selection on the evolution of three strains of wheat streak mosaic tritimovirus Arch. Virol. 146 2001 619 628
    • (2001) Arch. Virol. , vol.146 , pp. 619-628
    • Choi, I.-R.1    Hall, J.S.2    Henry, M.3    Zhang, L.4    Hein, G.L.5    French, R.6    Stenger, D.C.7
  • 5
    • 0036132387 scopus 로고    scopus 로고
    • Quasispecies theory in virology
    • E. Domingo Quasispecies theory in virology J. Virol. 76 2002 463 465
    • (2002) J. Virol. , vol.76 , pp. 463-465
    • Domingo, E.1
  • 6
    • 0002130413 scopus 로고
    • Mutation rates and rapid evolution of RNA viruses
    • S.S. Morse Raven Press New York, NY
    • E. Domingo, and J.J. Holland Mutation rates and rapid evolution of RNA viruses S.S. Morse The Evolutionary Biology of Viruses 1994 Raven Press New York, NY 161 184
    • (1994) The Evolutionary Biology of Viruses , pp. 161-184
    • Domingo, E.1    Holland, J.J.2
  • 7
    • 0030747157 scopus 로고    scopus 로고
    • RNA virus mutations and fitness for survival
    • E. Domingo, and J.J. Holland RNA virus mutations and fitness for survival Annu. Rev. Microbiol. 51 1997 151 178
    • (1997) Annu. Rev. Microbiol. , vol.51 , pp. 151-178
    • Domingo, E.1    Holland, J.J.2
  • 8
    • 0017806301 scopus 로고
    • Nucleotide sequence heterogeneity of an RNA phage population
    • E. Domingo, D. Sabo, T. Taniguchi, and C. Weissman Nucleotide sequence heterogeneity of an RNA phage population Cell 13 1978 735 744
    • (1978) Cell , vol.13 , pp. 735-744
    • Domingo, E.1    Sabo, D.2    Taniguchi, T.3    Weissman, C.4
  • 11
    • 0027221640 scopus 로고
    • Rates of spontaneous mutation among RNA viruses
    • J.W. Drake Rates of spontaneous mutation among RNA viruses Proc. Natl. Acad. Sci. U. S. A. 90 1993 4171 4175
    • (1993) Proc. Natl. Acad. Sci. U. S. A. , vol.90 , pp. 4171-4175
    • Drake, J.W.1
  • 13
    • 0030162644 scopus 로고    scopus 로고
    • On the nature of virus quasispecies
    • M. Eigen On the nature of virus quasispecies Trends Microbiol. 4 1996 216 218
    • (1996) Trends Microbiol. , vol.4 , pp. 216-218
    • Eigen, M.1
  • 14
    • 0242406908 scopus 로고    scopus 로고
    • Evolution of wheat streak mosaic virus: Dynamics of population growth within plants may explain limited variation
    • R. French, and D.C. Stenger Evolution of wheat streak mosaic virus: dynamics of population growth within plants may explain limited variation Annu. Rev. Phytopathol. 41 2003 199 214
    • (2003) Annu. Rev. Phytopathol. , vol.41 , pp. 199-214
    • French, R.1    Stenger, D.C.2
  • 16
    • 0035836375 scopus 로고    scopus 로고
    • Three distinct mechanisms facilitate genetic isolation of sympatric wheat streak mosaic virus lineages
    • J.S. Hall, R. French, G.L. Hein, T.J. Morris, and D.C. Stenger Three distinct mechanisms facilitate genetic isolation of sympatric wheat streak mosaic virus lineages Virology 282 2001 230 236
    • (2001) Virology , vol.282 , pp. 230-236
    • Hall, J.S.1    French, R.2    Hein, G.L.3    Morris, T.J.4    Stenger, D.C.5
  • 17
    • 0034785671 scopus 로고    scopus 로고
    • Structure and temporal dynamics of populations within wheat streak mosaic virus isolates
    • J.S. Hall, R. French, T.J. Morris, and D.C. Stenger Structure and temporal dynamics of populations within wheat streak mosaic virus isolates J. Virol. 75 2001 10231 10243
    • (2001) J. Virol. , vol.75 , pp. 10231-10243
    • Hall, J.S.1    French, R.2    Morris, T.J.3    Stenger, D.C.4
  • 18
    • 0036133286 scopus 로고    scopus 로고
    • Is the quasispecies concept relevant to RNA viruses?
    • E.C. Holmes, and A. Moya Is the quasispecies concept relevant to RNA viruses? J. Virol. 76 2002 460 462
    • (2002) J. Virol. , vol.76 , pp. 460-462
    • Holmes, E.C.1    Moya, A.2
  • 19
    • 0022211482 scopus 로고
    • Statistical properties of the number of recombination events in the history of a sample of DNA sequences
    • R. Hudson, and N. Kaplan Statistical properties of the number of recombination events in the history of a sample of DNA sequences Genetics 111 1985 147 164
    • (1985) Genetics , vol.111 , pp. 147-164
    • Hudson, R.1    Kaplan, N.2
  • 20
    • 0026709389 scopus 로고
    • Estimation of levels of gene flow from DNA sequence data
    • R.R. Hudson, M. Slatkin, and W.P. Maddison Estimation of levels of gene flow from DNA sequence data Genetics 132 1992 583 589
    • (1992) Genetics , vol.132 , pp. 583-589
    • Hudson, R.R.1    Slatkin, M.2    Maddison, W.P.3
  • 22
    • 0026741428 scopus 로고
    • Analysis of heterogeneity within the type strain of satellite tobacco mosaic virus reveals several variants and a strong bias for G to a substitution mutations
    • G. Kurath, C.M.E. Rey, and J.A. Dodds Analysis of heterogeneity within the type strain of satellite tobacco mosaic virus reveals several variants and a strong bias for G to A substitution mutations Virology 189 1992 233 244
    • (1992) Virology , vol.189 , pp. 233-244
    • Kurath, G.1    Rey, C.M.E.2    Dodds, J.A.3
  • 23
    • 0001850177 scopus 로고
    • Effective population size, genetic variation, and their use in population management
    • M.E. Soulé Cambridge Univ. Press Cambridge, UK
    • R. Lande, and G.F. Barrowclough Effective population size, genetic variation, and their use in population management M.E. Soulé Viable Populations for Conservation 1987 Cambridge Univ. Press Cambridge, UK 87 123
    • (1987) Viable Populations for Conservation , pp. 87-123
    • Lande, R.1    Barrowclough, G.F.2
  • 24
    • 4544331687 scopus 로고    scopus 로고
    • Genetic bottlenecks reduce population variation in an experimental RNA virus population
    • H. Li, and M.J. Roossinck Genetic bottlenecks reduce population variation in an experimental RNA virus population J. Virol. 2004 10582 10587
    • (2004) J. Virol. , pp. 10582-10587
    • Li, H.1    Roossinck, M.J.2
  • 25
    • 0033000982 scopus 로고    scopus 로고
    • Temporal changes in allele frequencies provide estimates of population bottleneck size
    • G. Luikart, J.M. Cornuet, and F.W. Allendorf Temporal changes in allele frequencies provide estimates of population bottleneck size Conserv. Biol. 13 1999 523 530
    • (1999) Conserv. Biol. , vol.13 , pp. 523-530
    • Luikart, G.1    Cornuet, J.M.2    Allendorf, F.W.3
  • 26
    • 0031897789 scopus 로고    scopus 로고
    • Detecting recombination from gene trees
    • J. Maynard Smith, and N.H. Smith Detecting recombination from gene trees Mol. Biol. Evol. 15 1998 590 599
    • (1998) Mol. Biol. Evol. , vol.15 , pp. 590-599
    • Maynard Smith, J.1    Smith, N.H.2
  • 27
    • 0029806450 scopus 로고    scopus 로고
    • Characterization of genetic variability among natural populations of wheat streak mosaic virus
    • J.E. McNeil, R. French, G.L. Hein, P.S. Baenziger, and K.M. Eskridge Characterization of genetic variability among natural populations of wheat streak mosaic virus Phytopathology 86 1996 1222 1227
    • (1996) Phytopathology , vol.86 , pp. 1222-1227
    • McNeil, J.E.1    French, R.2    Hein, G.L.3    Baenziger, P.S.4    Eskridge, K.M.5
  • 29
    • 2142753891 scopus 로고    scopus 로고
    • The population genetics and evolutionary epidemiology of RNA viruses
    • A. Moya, E.C. Holmes, and F. González-Candelas The population genetics and evolutionary epidemiology of RNA viruses Nat. Rev., Microbiol. 2 2004 279 288
    • (2004) Nat. Rev., Microbiol. , vol.2 , pp. 279-288
    • Moya, A.1    Holmes, E.C.2    González-Candelas, F.3
  • 31
    • 0042696200 scopus 로고    scopus 로고
    • Contributions of vesicular stomatitis virus to the understanding of RNA virus evolution
    • I.S. Novella Contributions of vesicular stomatitis virus to the understanding of RNA virus evolution Curr. Opin. Microbiol. 6 2003 399 405
    • (2003) Curr. Opin. Microbiol. , vol.6 , pp. 399-405
    • Novella, I.S.1
  • 32
    • 4544245469 scopus 로고    scopus 로고
    • Positive selection of synonymous mutations in vesicular stomatitis virus
    • I.S. Novella, S. Zárate, D. Metzgar, and B.E. Ebendick-Corpus Positive selection of synonymous mutations in vesicular stomatitis virus J. Mol. Biol. 342 2004 1415 1421
    • (2004) J. Mol. Biol. , vol.342 , pp. 1415-1421
    • Novella, I.S.1    Zárate, S.2    Metzgar, D.3    Ebendick-Corpus, B.E.4
  • 33
    • 0347513220 scopus 로고    scopus 로고
    • DnaSP, DNA polymorphism analyses by the coalescent and other methods
    • J. Rozas, J.C. Sanchez-DelBarrio, X. Messeguer, and R. Rozas DnaSP, DNA polymorphism analyses by the coalescent and other methods Bioinformatics 19 2003 2496 2497
    • (2003) Bioinformatics , vol.19 , pp. 2496-2497
    • Rozas, J.1    Sanchez-Delbarrio, J.C.2    Messeguer, X.3    Rozas, R.4
  • 34
    • 0141458956 scopus 로고    scopus 로고
    • Estimation of population bottlenecks during systemic movement of tobacco mosaic virus in tobacco plants
    • S. Sacristán, J.M. Malpica, A. Fraile, and F. García-Arenal Estimation of population bottlenecks during systemic movement of tobacco mosaic virus in tobacco plants J. Virol. 77 2003 9906 9911
    • (2003) J. Virol. , vol.77 , pp. 9906-9911
    • Sacristán, S.1    Malpica, J.M.2    Fraile, A.3    García-Arenal, F.4
  • 35
    • 0034057329 scopus 로고    scopus 로고
    • Evolutionarily related Sindbis-like plant viruses maintain different levels of population diversity in a common host
    • W.L. Schneider, and M.J. Roossinck Evolutionarily related Sindbis-like plant viruses maintain different levels of population diversity in a common host J. Virol. 74 2000 3130 3134
    • (2000) J. Virol. , vol.74 , pp. 3130-3134
    • Schneider, W.L.1    Roossinck, M.J.2
  • 36
    • 0034990080 scopus 로고    scopus 로고
    • Genetic diversity in RNA virus quasispecies is controlled by virus-host interactions
    • W.L. Schneider, and M.J. Roossinck Genetic diversity in RNA virus quasispecies is controlled by virus-host interactions J. Virol. 75 2001 6566 6571
    • (2001) J. Virol. , vol.75 , pp. 6566-6571
    • Schneider, W.L.1    Roossinck, M.J.2
  • 37
    • 0030878535 scopus 로고    scopus 로고
    • Virus 'quasispecies': Making a mountain out of a molehill?
    • D.B. Smith, J. McAllister, C. Casino, and P. Simmonds Virus 'quasispecies': making a mountain out of a molehill? J. Gen. Virol. 78 1997 1511 1519
    • (1997) J. Gen. Virol. , vol.78 , pp. 1511-1519
    • Smith, D.B.1    McAllister, J.2    Casino, C.3    Simmonds, P.4
  • 38
    • 0027064537 scopus 로고
    • Lack of evidence for proofreading mechanisms associated with an RNA virus polymerase
    • D.A. Steninhauser, E. Domingo, and J.J. Holland Lack of evidence for proofreading mechanisms associated with an RNA virus polymerase Gene 122 1992 288 2811
    • (1992) Gene , vol.122 , pp. 288-2811
    • Steninhauser, D.A.1    Domingo, E.2    Holland, J.J.3
  • 39
    • 0031874375 scopus 로고    scopus 로고
    • Phylogenetic relationships within the family Potyviridae: Wheat streak mosaic virus and brome streak mosaic virus are not members of the genus Rymovirus
    • D.C. Stenger, J.S. Hall, I.-R. Choi, and R. French Phylogenetic relationships within the family Potyviridae: wheat streak mosaic virus and brome streak mosaic virus are not members of the genus Rymovirus Phytopathology 88 1998 782 787
    • (1998) Phytopathology , vol.88 , pp. 782-787
    • Stenger, D.C.1    Hall, J.S.2    Choi, I.-R.3    French, R.4
  • 40
    • 0036432967 scopus 로고    scopus 로고
    • Patterns of polymorphism in Wheat streak mosaic virus: Sequence space explored by a clade of closely related viral genotypes rivals that between the most divergent strains
    • D.C. Stenger, D.L. Seifers, and R. French Patterns of polymorphism in Wheat streak mosaic virus: sequence space explored by a clade of closely related viral genotypes rivals that between the most divergent strains Virology 302 2002 58 70
    • (2002) Virology , vol.302 , pp. 58-70
    • Stenger, D.C.1    Seifers, D.L.2    French, R.3
  • 41
    • 0031574072 scopus 로고    scopus 로고
    • The ClustalX windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • J.D. Thompson, T.J. Gibson, F. Plewniak, F. Jeanmougin, and D. Higgins The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools Nucleic Acids Res. 24 1997 4876 4882
    • (1997) Nucleic Acids Res. , vol.24 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.5
  • 42
    • 3042581415 scopus 로고    scopus 로고
    • The ins and outs of nondestructive cell-to-cell and systemic movement of plant viruses
    • E. Waigmann, S. Ueki, K. Trutnyeva, and V. Citovsky The ins and outs of nondestructive cell-to-cell and systemic movement of plant viruses Crit. Rev. Plant Sci. 23 2004 195 250
    • (2004) Crit. Rev. Plant Sci. , vol.23 , pp. 195-250
    • Waigmann, E.1    Ueki, S.2    Trutnyeva, K.3    Citovsky, V.4
  • 43
    • 0024498122 scopus 로고
    • A generalized approach for estimating effective population size from temporal changes in allele frequency
    • R. Waples A generalized approach for estimating effective population size from temporal changes in allele frequency Genetics 121 1989 379 391
    • (1989) Genetics , vol.121 , pp. 379-391
    • Waples, R.1
  • 44
    • 84890417804 scopus 로고
    • The genetical structure of populations
    • S. Wright The genetical structure of populations Ann. Eugenics 15 1951 323 354
    • (1951) Ann. Eugenics , vol.15 , pp. 323-354
    • Wright, S.1
  • 45
    • 0034848170 scopus 로고    scopus 로고
    • DAMBE: Data analysis in molecular biology and evolution
    • X. Xia, and Z. Xie DAMBE: data analysis in molecular biology and evolution J. Hered. 92 2001 371 373
    • (2001) J. Hered. , vol.92 , pp. 371-373
    • Xia, X.1    Xie, Z.2
  • 46
    • 0004252445 scopus 로고
    • Prentice Hall Englewood Cliffs New Jersey
    • J.H. Zar Biostatistical Analysis 1974 Prentice Hall Englewood Cliffs New Jersey 307 308
    • (1974) Biostatistical Analysis , pp. 307-308
    • Zar, J.H.1


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