Phylogeny of pholcid spiders (Araneae: Pholcidae): Combined analysis using morphology and molecules

Molecular Phylogenetics and Evolution

Volumn 37, Issue 3, 2005, Pages 661-673

  Bruvo Madarić, Branka ^a,b   Huber, Bernhard A ^a,c   Steinacher, Arno ^a   Pass, Günther ^a  

^a UNIVERSITY OF VIENNA   (Austria)

^b RUDER BO KOVI INSTITUTE   (Croatia)

^c ZOOLOGISCHES FORSCHUNGSMUSEUM ALEXANDER KOENIG   (Germany)

Author keywords

12S; 16S; 28S; COI; Gaps; Morphology; Pholcidae; Phylogeny; Ribosomal RNA

Indexed keywords

PRIMER DNA; RIBOSOME DNA;

ANIMAL; ARTICLE; BAYES THEOREM; BIOLOGICAL MODEL; CLASSIFICATION; COMPARATIVE STUDY; DNA SEQUENCE; GENETICS; HISTOLOGY; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYLOGENY; SPIDER; STATISTICAL MODEL;

ANIMALS; BASE SEQUENCE; BAYES THEOREM; DNA PRIMERS; DNA, RIBOSOMAL; LIKELIHOOD FUNCTIONS; MODELS, GENETIC; MOLECULAR SEQUENCE DATA; PHYLOGENY; SEQUENCE ANALYSIS, DNA; SPIDERS;

ARANEAE; METAGONIA; PHOLCIDAE;

EID: 27744470234     PISSN: 10557903     EISSN: 10959513     Source Type: Journal    
DOI: 10.1016/j.ympev.2005.08.016     Document Type: Article

References (75)

1. M.A. Arnedo, J. Coddington, I. Agnarsson, and R.G. Gillespie From a comb to a tree: phylogenetic relationships of the comb-footed spiders (Araneae, Theridiidae) inferred from nuclear and mitochondrial genes Mol. Phyl. Evol. 31 2004 225 245
2. R.H. Baker, and R. DeSalle Multiple sources of character information and the phylogeny of Hawaiian drosophilids Syst. Biol. 46 1997 654 673
3. Bartos, M., 1998. Quantitative analyses of male courtship behavior in Pholcus phalangioides (Fuesslin, 1775) (Araneae, Pholcidae). Proc. 17th European Colloquium of Arachnology, Edinburgh 1997 (P.A. Selden ed.) pp. 171-176.
4. J.A. Blanchong, M.S. Summerfield, M.A. Popson, and E.M. Jakob Chivalry in pholcid spiders revisited J. Arachnol. 23 1995 165 170
5. A. Chenuil, M. Solignac, and M. Bernard Evolution of the large-subunit ribosomal RNA binding site for protein L23/25 Mol. Biol. Evol. 14 1997 578 588
6. D.O. Clary, and D.R. Wolstenholme The mitochondrial DNA molecule of Drosophila yakuba: nucleotide sequence, gene organization, and genetic code J. Mol. Evol. 22 1985 252 271
7. J.A. Coddington, and H.W. Levi Systematics and evolution of spiders (Araneae) Annu. Rev. Ecol. Syst. 22 1991 565 592
8. M.T. Dixon, and D.M. Hillis Ribosomal RNA secondary structure: compensatory mutations and implications for phylogenetic analysis Mol. Biol. Evol. 10 1993 256 267
9. W.G. Eberhard Notes on the ecology and behaviour of Physocyclus globosus (Araneae, Pholcidae) Bull. Br. Arachnol. Soc. 9 1992 38 42
10. W.G. Eberhard, S. Guzmán-Gómez, and K.M. Catley Correlation between spermathecal morphology and mating systems in spiders Biol. J. Linn. Soc. 50 1993 197 209
11. G.D. Edgecombe, G. Giribet, and W.C. Wheeler Phylogeny of Henicopidae (Chilopoda: Litobiomorpha): a combined analysis of morphology and five molecular loci Syst. Entomol. 27 2002 31 64
12. G.D. Edgecombe, and G. Giribet Adding mitochondrial sequence data (16S rRNA and cytochrome c oxidase subunit I) to the phylogeny of centipedes (Myriapoda, Chilopoda): an analysis of morphology and four molecular loci Journal Zool. Syst. Evol. Res. 42 2004 89 134
13. K. Fang, C.C. Yang, B.W. Lue, S.H. Chen, and K.Y. Lue Phylogenetic corroboration of superfamily Lycosoidae spiders (Araneae) as inferred from partial mitochondrial 12S and 16S ribosomal DNA sequences Zool. Stud. 39 2000 107 113
14. P.K. Flook, S. Klee, and C.H.F. Rowell Combined molecular phylogenetic analysis of the Orthoptera (Arthropoda, Insecta) and implications for higher systematics Syst. Biol. 48 1999 233 253
15. O. Folmer, M. Black, W. Hoeh, R. Lutz, and R. Vrijenhoek DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates Mel. Marine Biol. Biot. 3 1994 294 299
16. P.-A. Fürst, and G. Blandenier Psilochorus simoni (Berland, 1911) (Araneae, Pholcidae): Découvertes de nouvelles stations suisses et discussion de son écologie Bull. Soc. Neuchâtel. Sci. Nat. 116 1993 75 85
17. G. Giribet, and W.C. Wheeler On gaps Mol. Phyl. Evol. 13 1999 132 143
18. T.A. Hall BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT Nucl. Acids. Symp. Ser. 41 1999 95 98
19. M.C. Hedin, and W.P. Maddison A combined molecular approach to phylogeny of the jumping spider subfamily Dendryphantinae (Araneae: Salticidae) Mol. Phyl. Evol. 18 2001 386 403
20. B.A. Huber Genital morphology, copulatory mechanism and reproductive biology in Psilochorus simoni (Berland, 1911) (Pholcidae; Araneae) Netherl. J. Zool. 44 1994 85 99
21. B.A. Huber Copulatory mechanism in Holocnemus pluchei and Pholcus opilionoides, with notes on male cheliceral apophyses and stridulatory organs in Pholcidae (Araneae) Acta Zool. Stockholm. 76 1995 291 300
22. B.A. Huber Genitalia, fluctuating asymmetry, and patterns of sexual selection in Physocyclus globosus (Araneae: Pholcidae) Rev. Suisse Zool. suppl. 1996 1996 289 294
23. B.A. Huber On the distinction between Modisimus and Hedypsilus (Pholcidae; Araneae), with notes on behavior and natural history Zool. Scripta 25 1996 233 240
24. B.A. Huber Evidence for gustatorial courtship in a haplogyne spider (Hedypsilus culicinus: Pholcidae: Araneae) Netherl. J. Zool. 47 1997 95 98
25. B.A. Huber On American 'Micromerys' and Metagonia (Araneae, Pholcidae), with notes on natural history and genital mechanics Zool. Scripta 25 1997 341 363
26. B.A. Huber Genital mechanics in some Neotropical pholcid spiders (Araneae: Pholcidae), with implications for systematics J. Zool. London 244 1998 587 599
27. B.A. Huber New World pholcid spiders (Araneae: Pholcidae): a revision at generic level Bull. Amer. Mus. Nat. Hist. 254 2000 1 348
28. B.A. Huber The pholcids of Australia (Araneae; Pholcidae): Taxonomy, biogeography, and relationships Bull. Amer. Mus. Nat. Hist. 260 2001 1 144
29. B.A. Huber Functional morphology of the genitalia in the spider Spermophora senoculata (Pholcidae, Araneae) Zool. Anz. 241 2002 105 116
30. B.A. Huber Cladistic analysis of Malagasy pholcid spiders reveals generic level endemism: revision of Zatavua n. gen. and Paramicromerys Millot (Pholcidae, Araneae) Zool. J. Linn. Soc. 137 2003 261 318
31. B.A. Huber High species diversity in one of the dominant groups of spiders in East African montane forests (Araneae: Pholcidae: Buitinga n. gen., Spermophora Hentz) Zool. J. Linn. Soc. 137 2003 555 619
32. B.A. Huber Southern African pholcid spiders: Revision and cladistic analysis of Quamtana gen. nov. and Spermophora Hentz (Araneae: Pholcidae), with notes on male-female covariation Zool. J. Linn. Soc. 139 2003 477 527
33. B.A. Huber Rapid evolution and species-specificity of arthropod genitalia: fact or artifact? Org. Divers. Evol. 3 2003 63 71
34. Huber, B.A., 2005. Revision of the genus Spermophora Hentz in Southeast Asia and on the Pacific Islands, with descriptions of three new genera (Araneae: Pholcidae). Zoolo. Meded. 79-2, 61-114.
35. B.A. Huber, and A.D. Brescovit Ibotyporanga Mello-Leitão: Tropical spiders in Brazilian semi-arid habitats (Araneae: Pholcidae) Ins. Syst. Evol. 34 2003 15 20
36. B.A. Huber, and W.G. Eberhard Courtship, copulation, and genital mechanics in Physocyclus globosus (Araneae, Pholcidae) Can. J. Zool. 74 1997 905 918
37. J.P. Huelsenbeck, and F.R. Ronquist MrBayes: Bayesian inference of phylogeny Bioinformatics 17 2001 754 755
38. R.R. Jackson Predator-prey interactions between jumping spiders (Araneae, Salticidae) and Pholcus phalangioides (Araneae, Pholcidae) J. Zool. Lond. 220 1990 553 559
39. R.R. Jackson Predator-prey interactions between web-invading jumping spiders and two species of tropical web-building pholcid spiders, Psilochorus sphaeroides and Smeringopus pallidus J. Zool. Lond. 227 1992 531 536
40. R.R. Jackson, and R.J. Rowe Web-invasion and araneophagy by New Zealand and Australian pholcid spiders New Zealand J. Zool. 14 1992 139 140
41. R.R. Jackson, R.J. Brassington, and R.J. Rowe Anti-predator defences of Pholcus phalangioides (Araneae, Pholcidae), a web-building and web-invading spider J. Zool. Lond. 220 1990 543 552
42. R.R. Jackson, R.J. Rowe, and G.E. Campbell Anti-predator defences of Psilochorus sphaeroides and Smeringopus pallidus (Araneae, Pholcidae), tropical web-building spiders J. Zool. Lond. 228 1992 227 232
43. E.M. Jakob Costs and benefits of group living for pholcid spiderlings: losing food, saving silk Anim. Behav. 41 1991 711 722
44. E.M. Jakob Contests over prey by group-living pholcids (Holocnemus pluchei) J. Arachnol. 22 1994 39 45
45. J.L. Kaster, and E.M. Jakob Last-male sperm priority in a haplogyne spider (Araneae: Pholcidae): correlations between female morphology and patterns of sperm usage Ann. Entomol. Soc. America 90 1997 254 259
46. A. Kawakita, T. Sota, J.S. Ascher, M. Ito, H. Tanaka, and M. Kato Evolution and phylogenetic utility of alignment gaps within intron sequences of three nuclear genes in bumble bees (Bombus) Mol. Biol. Evol. 20 2003 87 92
47. W.P. Maddison, and M.C. Hedin Jumping spider phylogeny (Araneae: Salticidae) Invertebr. Syst. 17 2003 529 549
48. D.C.S.G. Oliveira, E.H. Wintermute, W.J. Etges, W.B. Heed, P.M. O'Grady, and R. DeSalle Hierarchical structure in the Drosophila mojavensis cluster (Diptera: Drosophilidae) Hereditas 139 2003 223 227
49. A. Phillips, D. Janies, and W.C. Wheeler Multiple sequence alignment in phylogenetic analysis Mol. Phyl. Evol. 16 2000 317 330
50. A.H. Porter, and E.M. Jakob Allozyme variation in the introduced spider Holocnemus pluchei (Araneae, Pholcidae) in California J. Arachnol. 18 1990 313 319
51. D. Posada, and K.A. Crandall Modeltest: testing the model of DNA substitution Bioinformatics 14 1998 817 818
52. L. Prendini, T.M. Crowe, and W.C. Wheeler Systematics and biogeography of the family Scorpionidae (Chelicerata: Scorpiones) with a discussion on phylogenetic methods Invert. Syst. 17 2003 185 259
53. J.A. Sánchez, H.R. Lasker, and D.J. Taylor Phylogenetic analyses among octocorals (Cnidaria): mitochondrial and nuclear DNA sequences (lsu-rRNA, 16S and ssu-rRNA, 18S) support two convergent clades of branching gorgonians Mol. Phyl. Evol. 29 2003 31 42
54. D. Schaefer, and G. Uhl Male competition over access to females in a spider with last-male sperm precedence Ethology 109 2003 385 400
55. M.A. Schäfer, and G. Uhl Determinants of paternity success in the spider Pholcus phalangioides (Pholcidae: Araneae): the role of male and female mating behaviour Behav. Ecol. Sociobiol. 51 2002 368 377
56. M.P. Simmons, and H. Ochoterena Gaps as characters in sequence-based phylogenetic analyses Syst Biol. 49 2000 369 381
57. M.P. Simmons, H. Ochoterena, and T.G. Carr Incorporation, relative homoplasy, and the effect of gap characters in sequence-based phylogenetic analyses Syst. Biol. 50 2001 454 462
58. Simon, E., 1893. Histoire Naturelle des Araignées. 2e edit, Paris 1, 256-488.
59. C. Simon, F. Frati, A. Beckenbach, B. Crespi, H. Liu, and P. Flook Evolution, weighting, and phylogenetic utility of mitochondrial gene sequences and a compilation of conserved polymerase chain reaction primers Ann. Entomol. Soc. Am. 87 1994 651 701
60. R.J. Sommer, M. Retzlaff, K. Goerlich, K. Sander, and D. Tautz Evolutionary conservation pattern of zinc-finger domains of Drosophila segmentation genes Proc. Natl. Acad. Sci. USA 89 1992 10782 10786
61. Sorenson, M.D., 1999. TreeRot, Version 2. Computer software and documentation. Boston University, MA.
62. D. Strickman, R. Sithiprasasna, and D. Southard Bionomics of the spider, Crossopriza lyoni (Araneae, Pholcidae), a predator of Dengue vectors in Thailand J. Arachnol. 25 1997 194 201
63. Swofford, D.L., 2000. PAUP*: Phylogenetic analysis using parsimony (* and other methods), version 4. Sinauer.
64. J.D. Thompson, D.G. Higgins, and T.J. Gibson CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice Nucl. Acids Res. 22 1994 4673 4680
65. G. Uhl Sperm storage and repeated egg production in female Pholcus phalangioides Fuesslin (Araneae) Bull. Soc. Neuschatel Sci. Nat. 116 1993 245 252
66. G. Uhl Mating behaviour and female sperm storage in Pholcus phalangioides (Fuesslin) (Araneae) Mem. Qd. Mus. 33 1993 667 674
67. G. Uhl Genital morphology and sperm storage in Pholcus phalangioides (Fuesslin, 1775) (Pholcidae; Araneae) Acta Zool. (Stockholm) 75 1994 1 12
68. G. Uhl Ultrastructure of the accessory glands in female genitalia of Pholcus phalangioides (Fuesslin, 1775) (Pholcidae; Araneae) Acta Zool.Stockholm 75 1994 13 25
69. G. Uhl Sperm storage secretion of female cellar spiders (Pholcus phalangioides; Araneae): a gel-electrophoretic analysis J. Zool. London 240 1996 153 161
70. G. Uhl Mating behaviour in the cellar spider, Pholcus phalangioides, indicates sperm mixing Animal Behaviour 56 1998 1155 1159
71. G. Uhl, B.A. Huber, and W. Rose Male pedipalp morphology and copulatory mechanism in Pholcus phalangioides (Fuesslin, 1775) (Araneae, Pholcidae) Bull. Br. Arachnol. Soc. 10 1995 1 9
72. G. Uhl, S. Schmitt, M.A. Schäfer, and W. Blanckenhorn Food and sex-specific growth strategies in a spider Evol. Ecol. Res. 6 2004 523 540
73. W.C. Wheeler Sequence alignment, parameter sensitivity, and the phylogenetic analysis of molecular data Syst. Biol. 44 1995 321 331
74. Young, N., Healy, J., 2002. GapCoder-A computer program for including indels in phylogenetic analysis. http://www.tufts.edu/vet/richlab/young/ GapCoder/.
75. Yoward, P., 1998. Sperm competition in Pholcus phalangioides (Fuesslin, 1775) (Araneae, Pholcidae) - shorter second copulations gain higher paternity reward than first copulations. Proc. 17th European Colloquium of Arachnology, Edinburgh 1997 (P.A. Selden ed.) pp. 167-170.