Immobilization of DNA on 11-mercaptoundecanoic acid-modified gold (111) surface for atomic force microscopy imaging

Microscopy Research and Technique

Volumn 68, Issue 2, 2005, Pages 59-64

  Song, Yonghai ^a   Li, Zhuang ^a   Liu, Zhiguo ^a   Wei, Gang ^a   Wang, Li ^a   Sun, Lanlan ^a  

^a CHANGCHUN INSTITUTE OF APPLIED CHEMISTRY   (China)

Author keywords

11 mercaptoundecanoic acid (MUDA); Atomic force microscopy (AFM); DNA; Gold (111); Self assembled monolayers (SAMs)

Indexed keywords

ATOMIC FORCE MICROSCOPY; CARBOXYLATION; DNA; GOLD; POSITIVE IONS;

11-MERCAPTOUNDECANOIC ACID; ATOMIC FORCE MICROSCOPY; ATOMIC-FORCE-MICROSCOPY; DIVALENT CATION; DNA IMMOBILIZATION; GOLD (111); IMMOBILISATION; MICROSCOPY IMAGING; SELF-ASSEMBLED MONOLAYER;

SELF ASSEMBLED MONOLAYERS;

11 MERCAPTOUNDECANOIC ACID; COPPER ION; GOLD 111; GOLD DERIVATIVE; MAGNESIUM ION; PHOSPHATE; PLASMID DNA; UNCLASSIFIED DRUG; UNDECANOIC ACID; ZINC ION;

ARTICLE; ATOMIC FORCE MICROSCOPY; DNA CONFORMATION; DNA DETERMINATION; MOLECULAR STABILITY; NUCLEIC ACID IMMOBILIZATION; PH; PRIORITY JOURNAL; REPRODUCIBILITY; SURFACE PROPERTY;

EID: 27644566188     PISSN: 1059910X     EISSN: None     Source Type: Journal    
DOI: 10.1002/jemt.20235     Document Type: Article

References (31)

1. Allsion DP, Bottomley LA, Thundat T, Brown GM, Woychik RP, Schrick JJ, Jacobson KB, Warmack EJ. 1992. Immobilization of DNA for scanning probe microscopy. Proc Natl Acad Sci USA 89:10129-10133.
2. Bussiek M, Mucke N, Langowski J. 2003. Polylysine-coated mica can be used to observe systematic changes in the supercoiled DNA conformation by scanning force microscopy in solution. Nucleic Acids Res 31:e137-e147.
3. Bustamante C, Vesenka J, Tang CL, Rees W, Guthold M, Keller R. 1992. Circular DNA molecules imaged in air by scanning force microscopy. Biochemistry 31:22-26.
4. Clavilier J, Armand D, Wu BL. 1982. Electrochemical study of the initial surface condition of platinum surfaces with (100) and (111) orientations. J Electroanal Chem 135:159-166.
5. Dame RT, Wyman C, Goosen N. 2000. H-NS mediated compaction of DNA visualized by atomic force microscopy. Nucleic Acids Res 28:3504-3510.
6. Duguid J, Bloomfield VA, Benevides J, Thomas, GJ Jr. 1993. Raman spectroscopy of DNA-metal complexes. I. Interactions and conformational effects of the divalent cations: Mg, Ca, Sr, Ba, Mn, Co, Ni, Cu, Pd, and Cd. Biophys J 65:1916-1928.
7. Feng XZ, Bash R, Balagurumoorthy P, Lohr D, Hurrington RE, Lindsay SM. 2000. Conformational transition in DNA on a cold surface. Nucleic Acids Res 28:593-596.
8. Hansma HG, Laney DE. 1996. DNA binding to mica correlates with cationic radius: assay by atomic force microscopy. Biophys J 70:1933-1939.
9. Hansma HG, Bezanilla M, Zenhausem F, Adrian M, Sinsheimer RL. 1993. Atomic force microscopy of DNA in aqueous solutions. Nucleic Acids Res 21:505-512.
10. Hegner M, Wagner P, Semenza G. 1993. Immobilizing DNA on gold via thiol modification for atomic force microscopy imaging in buffer solutions. FEBS Lett 336:452-456.
11. Huang E, Zhou F, Deng L. 2000. Studies of surface coverage and orientation of DNA molecules immobilized onto preformed alkanethiol self-assembled monolayers. Langmuir 16:3272-3280.
12. Li C, Long Y, Kraatz HB, Lee JS. 2003. Electrochemical investigations of M-DNA self-assembled monolayers on gold electrodes. J Phys Chem B 107:2291-2296.
13. Lin PH, Guyot-Sionnest P. 1999. Replacement of self-assembled monolayers of di(phenylethynyl)benzenethiol on Au(111) by n-alkanethiols. Langmuir 15:6825-6828.
14. Lysetska M, Knoll A, Boehringer D, Hey T, Krauss G, Krausch G. 2002. UV light-damaged DNA and its interaction with human replication protein A: an atomic force microscopy study. Nucleic Acids Res 30:2686-2691.
15. Lyubchenko YL, Shlyakhtenko LS. 1997. Visualization of supercoiled DNA with atomic force microscopy in situ. Proc Natl Acad Sci USA 94:496-501.
16. Lyubchenko YL, Oden PI, Lampner D, Lindsay SM, Dunker KA. 1993. Atomic force microscopy of DNA and bacteriophage in air, water and propanol: the role of adhesion forces. Nucleic Acids Res 21:1117-1123.
17. Medalia O, Englander J, Guckenberger R, Sperling J. 2002. AFM imaging in solution of protein-DNA complexes formed on DNA anchored to a gold surface. Ultramicroscopy 90:103-112.
18. Oussatcheva EA, Pavlicek J, Sankey OF, Sinden RR, Lyubchenko YL, Potaman VN. 2004. Influence of global DNA topology on cruciform formation in supercoiled DNA. J Mol Biol 338:735-743.
19. Pastré D, Piétrement O, Fusil S, Landousy F, Jeusset J, David MO, Hamon L, Cam EL, Zozime A. 2003. Adsorption of DNA to mica mediated by divalent counterions: a theoretical and experimental study. Biophys J 85:2507-2518.
20. Shao Z, Mou J, Czajkowksy DM, Yang J, Yuan JY. 1996. Biological atomic force microscopy: what is achieved & what is needed. Adv Phys 45:1-86.
21. 2+ in NaCl aqueous solutions, at 25°C. J Chem Eng Data 45:15-19.
22. Thundat T, Warmack RJ, Allison DP, Bottomley LA, Lourenco AJ, Ferrell TL. 1992. Atomic force microscopy of deoxyribonucleic acid strands adsorbed on mica: the effect of humidity on apparent width and image contrast. J Vac Sci Technol A 10:630-635.
23. Thundat T, Allison DP, Warmack RJ. 1994. Stretched DNA structures observed with atomic force microscopy. Nucleic Acids Res 22:4224-4228.
24. Tseng YD, Ge HF, Wang XZ, Edwardson JM, Waring MJ, Fitzgerald WJ, Henderson RM. 2005. Atomic force microscopy study of the structural effects induced by echinomycin binding to DNA. J Mol Biol 345:745-758.
25. van der Vegte EW, Hadiziioannou G. 1997. Acid-base properties and the chemical imaging of surface-bound functional groups studied with scanning force microscopy. J Phys Chem B 101: 9563-9569.
26. Vesenka J, Manne S, Yang G, Bustamante C, Henderson E. 1993. Humidity effects on atomic force microscopy of gold-labeled DNA on mica. Scanning Microsc 7:781-788.
27. Wackerbarth H, Grubb M, Zhang J, Hansen AG, Ulstrup J. 2004. Dynamic of ordered-domain formation of DNA fragments on Au(111) with molecular resolution. Angew Chem Int Ed Engl 43:198-203.
28. Wang W, Lin J, Schwartz DC. 1998. Scanning force microscopy of DNA molecules elongated by convective fluid flow in an evaporating droplet. Biophys J 75:513-520.
29. Wang HD, Bash R, Yodh JG, Hager GL, Lohr D, Lindsay SM. 2002. Glutaraldehyde modified mica: a new surface for atomic force microscopy of chromatin. Biophys J 83:3619-3625.
30. Zhang R, Pang D, Zhang Z, Yan J, Yao J, Tian Z, Mao B, Sun S. 2002. Investigation of ordered ds-DNA monolayers on gold electrodes. J Phys Chem B 106:11233-11239.
31. Zheng JP, Li Z, Wu AG, Zhou HL, Bai HY, Song YH. 2002. The structural transition of DNA-Tris(1,10-phenanthroline) cobalt(III) complexes in ethanol-water solution. Biochem Biophys Res Commun 299:910-915.