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Volumn 3, Issue 10, 2005, Pages 809-817

Exploring icosahedral virus structures with VIPER

Author keywords

[No Author keywords available]

Indexed keywords

NUCLEIC ACID; NUCLEOPROTEIN;

EID: 27244438284     PISSN: 17401526     EISSN: None     Source Type: Journal    
DOI: 10.1038/nrmicro1283     Document Type: Review
Times cited : (47)

References (15)
  • 1
    • 0033954256 scopus 로고    scopus 로고
    • The Protein Data Bank
    • Berman, H. M. et al. The Protein Data Bank. Nucleic Acids Res. 28, 235-242 (2000).
    • (2000) Nucleic Acids Res. , vol.28 , pp. 235-242
    • Berman, H.M.1
  • 2
    • 0035194351 scopus 로고    scopus 로고
    • Virus Particle Explorer (VIPER), a website for virus capsid structures and their computational analyses
    • Reddy, V. S. et al. Virus Particle Explorer (VIPER), a website for virus capsid structures and their computational analyses. J. Virol. 75, 11943-11947 (2001).
    • (2001) J. Virol. , vol.75 , pp. 11943-11947
    • Reddy, V.S.1
  • 3
    • 0030861438 scopus 로고    scopus 로고
    • The SWISS-PROT protein sequence data bank and its supplement TrEMBL
    • Bairoch, A. & Apweiler, R. The SWISS-PROT protein sequence data bank and its supplement TrEMBL. Nucleic Acids Res. 25, 31-36 (1997).
    • (1997) Nucleic Acids Res. , vol.25 , pp. 31-36
    • Bairoch, A.1    Apweiler, R.2
  • 4
    • 84986512474 scopus 로고
    • CHARM M: A program for macromolecular energy, minimization, and dynamics calculations
    • Brooks, B. R. et al. CHARM M: A program for macromolecular energy, minimization, and dynamics calculations. J. Comp. Chem. 4, 187-217 (1983).
    • (1983) J. Comp. Chem. , vol.4 , pp. 187-217
    • Brooks, B.R.1
  • 5
    • 0022596727 scopus 로고
    • Solvation energy in protein folding and binding
    • Eisenberg, D. & McLachlan, A. D. Solvation energy in protein folding and binding. Nature 319, 199-203 (1986).
    • (1986) Nature , vol.319 , pp. 199-203
    • Eisenberg, D.1    McLachlan, A.D.2
  • 6
    • 0031961961 scopus 로고    scopus 로고
    • Energetics of quasiequivalence: Computational analysis of protein-protein interactions in icosahedral viruses
    • Reddy, V. S. et al. Energetics of quasiequivalence: Computational analysis of protein-protein interactions in icosahedral viruses. Biophys. J. 74:546-558 (1998).
    • (1998) Biophys. J. , vol.74 , pp. 546-558
    • Reddy, V.S.1
  • 7
    • 4444221565 scopus 로고    scopus 로고
    • UCSF Chimera - A visualization system for exploratory research and analysis
    • Pettersen, E. F. et al. UCSF Chimera - a visualization system for exploratory research and analysis. J. Comput. Chem. 25, 1605-1612 (2004).
    • (2004) J. Comput. Chem. , vol.25 , pp. 1605-1612
    • Pettersen, E.F.1
  • 8
    • 0026319199 scopus 로고
    • Protein folding and association: Insights from the interfacial and thermodynamic properties of hydrocarbons
    • Nicholls, A., Sharp, K. A. & Honig, B. Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons. Proteins 11, 281-296 (1991).
    • (1991) Proteins , vol.11 , pp. 281-296
    • Nicholls, A.1    Sharp, K.A.2    Honig, B.3
  • 9
    • 0030814038 scopus 로고    scopus 로고
    • WebMol - A Java based PDB viewer
    • Walther, D. WebMol - a Java based PDB viewer. Trends Biochem. Sci. 22, 274-275 (1997).
    • (1997) Trends Biochem. Sci. , vol.22 , pp. 274-275
    • Walther, D.1
  • 10
    • 0030851311 scopus 로고    scopus 로고
    • Cn3D: A new generation of three-dimensional molecular structure viewer
    • Hogue, C. W. V. Cn3D: A new generation of three-dimensional molecular structure viewer. Trends Biochem. Sci., 22, 314-316 (1997).
    • (1997) Trends Biochem. Sci. , vol.22 , pp. 314-316
    • Hogue, C.W.V.1
  • 11
    • 0031904355 scopus 로고    scopus 로고
    • Molecular packing in virus crystals: Geometry, chemistry, and biology
    • Naterajan, P. & Johnson, J. E. Molecular packing in virus crystals: geometry, chemistry, and biology. J. Struct. Biol. 121, 295-305 (1998).
    • (1998) J. Struct. Biol. , vol.121 , pp. 295-305
    • Naterajan, P.1    Johnson, J.E.2
  • 12
    • 73649156890 scopus 로고
    • Physical principles in the construction of regular viruses
    • Caspar, D. L. D. & Klug, A. Physical principles in the construction of regular viruses. Cold Spring Harbor Symp. Quant. Biol. 27, 1-24 (1962).
    • (1962) Cold Spring Harbor Symp. Quant. Biol. , vol.27 , pp. 1-24
    • Caspar, D.L.D.1    Klug, A.2
  • 13
    • 0036922897 scopus 로고    scopus 로고
    • A general method to quantify quasi-equivalence in icosahedral viruses
    • Damodaran, K. V., Reddy, V. S., Johnson, J. E. & Brooks, C. L. 3rd. A general method to quantify quasi-equivalence in icosahedral viruses. J. Mol. Biol. 324, 723-737 (2002).
    • (2002) J. Mol. Biol. , vol.324 , pp. 723-737
    • Damodaran, K.V.1    Reddy, V.S.2    Johnson, J.E.3    Brooks III, C.L.4
  • 14
    • 0028103275 scopus 로고
    • The CCP4 suite: Programs for protein crystallography
    • Collaborative Computational Project Number 4
    • Collaborative Computational Project Number 4. The CCP4 suite: Programs for protein crystallography. Acta Crystallogr. D Biol. Crystallogr. 50, 760-763 (1994).
    • (1994) Acta Crystallogr. D Biol. Crystallogr. , vol.50 , pp. 760-763
  • 15
    • 0003845223 scopus 로고    scopus 로고
    • The PyMOL Molecular Graphics System
    • [online]
    • DeLano, W. L. The PyMOL Molecular Graphics System [online] (2002).
    • (2002)
    • DeLano, W.L.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.