Identification of one intron loss and phylogenetic evolution of Dfak gene in the Drosophila melanogaster species group

Genetica

Volumn 125, Issue 2-3, 2005, Pages 223-230

  Jin, S ^a,b   Hu, G A ^b   Qian, Y H ^b   Zhang, L ^b   Zhang, J ^b   Qiu, G ^b   Zeng, Q T ^b   Gui, J F ^a  

^a INSTITUTE OF HYDROBIOLOGY   (China)

^b HUBEI UNIVERSITY   (China)

Author keywords

Dfak56; Drosophila melanogaster; Intron loss; Phylogenetic evolution; Single copy nuclear gene

Indexed keywords

COMPLEMENTARY DNA; DROSOPHILA PROTEIN; FAK56D PROTEIN, DROSOPHILA; FOCAL ADHESION KINASE; FOCAL ADHESION KINASE 1;

AMINO ACID SEQUENCE; ANIMAL; ARTICLE; CHEMISTRY; CLASSIFICATION; COMPARATIVE STUDY; DROSOPHILA; DROSOPHILA MELANOGASTER; ENZYMOLOGY; EXON; GENE; GENETICS; INTRON; MOLECULAR CLONING; MOLECULAR EVOLUTION; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYLOGENY; PROTEIN TERTIARY STRUCTURE; SEQUENCE HOMOLOGY; SPECIES DIFFERENCE;

AMINO ACID SEQUENCE; ANIMALS; BASE SEQUENCE; CLONING, MOLECULAR; DNA, COMPLEMENTARY; DROSOPHILA; DROSOPHILA MELANOGASTER; DROSOPHILA PROTEINS; EVOLUTION, MOLECULAR; EXONS; FOCAL ADHESION KINASE 1; FOCAL ADHESION PROTEIN-TYROSINE KINASES; GENES, INSECT; INTRONS; MOLECULAR SEQUENCE DATA; PHYLOGENY; PROTEIN STRUCTURE, TERTIARY; SEQUENCE HOMOLOGY, AMINO ACID; SPECIES SPECIFICITY;

DROSOPHILA BIARMIPES; DROSOPHILA ELEGANS; DROSOPHILA FICUSPHILA; DROSOPHILA JAMBULINA; DROSOPHILA MELANOGASTER; DROSOPHILA PROSTIPENNIS; DROSOPHILA PSEUDOOBSCURA; DROSOPHILA SIMULANS; DROSOPHILA TAKAHASHII; MELANOGASTER SUBGROUP;

EID: 27144499820     PISSN: 00166707     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10709-005-8693-x     Document Type: Article

References (39)

1. M. Ashburner M. Bodmer F. Lemeunier 1984 On the evolutionary relationships of Drosphila melanogaster Dev. Genet. 4 295 312
2. M. Ashburner 1998 Drosophila: A Laboratory Handbook cold Spring Harbor Lab. Press. Plainview NY
3. I.R. Bock M.P. Wheeler 1972 The Drosophila melanogaster species group studies in genetics VII Univ Texas Publ. 72 13
4. L.T. Chow R.E. Gelimas T.R. Broker R.J. Poberts 1977 An amazing sequence arrangement at 5'ends of adenovirus-2 Messenger RNA Cell 12 1 8
5. J.B. Cohen S.D. Broz A.D. Levinson 1989 Expression of the H-ras proto-oncogene is controlled by alternative splicing Cell 11 461 472
6. A.L. Feiber J. Rangarajan J.C. Vaughn 2002 The evolution of single-copy Drosophila nuclear 4f-rnp genes: spliceosomal intron losses reate polymorphic alleles J. Mol. Evol. 55 401 413
7. J. Fujimoto K. Sawamoto M. Okabe Y. Takagi T. Tezuka S. Yoshikawa H. Ryo H. Okano T. Yamamoto 1999 Cloning and characterization of Dfak56, a homolog of focal adhesion kinase, In Drosophila melanogaster J. Biol. Chem. 274 29196 29201
8. Y. Furuta D. Ilic S. Kanazawa N. Takeda T. Yamamoto S. Aizawa 1995 Mesodermal defects in late phase of gastrulation by a targeted mutation of focal adhesion kinase, FAK Oncogene 11 1989 1995
9. W. Gilbert S.J. DeSouz M.Y. Long 1997 Origin of genes Proc. Natl. Acad. Sci. USA 94 7698 7703
10. S.G. Goto H.W. Kitamura M.T. Kimura 2000 Phylogenetic relationships and climatic adaptation in the Drosophila takahashii and montium species subgroups Mol. Phylogenet. Evol. 15 147 156
11. S.G. Goto M. Kimura 2001 Phylogenetic utility of mitochondrial COI and COII nuclear Gpdh genes in Drosophila Mol. Phylogenet. Evol. 18 404 422
12. O. Gotoh 1998 Divergent structures of Caenorhabditis elegans cytochrome P450 genes suggest the frequent loss and gain of introns during the evolution of nematodes Mol. Biol. Evol. 15 1447 1459
13. B. Harr B. Zangerl C. Schlotterer 2000 Removal of Microsatellite interruptions by DNA replication slippage: phylogenetic evidence from Drosophila Mol. Biol. Evol. 17 1001 1009
14. N. Inomata H. Tachida T. Yamazaki 1997 Molecular evolution of the Amy Multigenes in the subgenus of male Drosophila Mol. Biol. Evol. 14 942 950
15. M. Kimura 1981 Estimation of evolutionary distances between homologous nucleotide sequences Proc. Natl. Acad. Sci. USA 78 454 458
16. A. Kopp J.R. True 2002 Phylogeny of the oriental Drosophila melanogaster species group: a multilocus reconstruction Syst. Biol. 51 1 20
17. S. Kumar K. Tamura I.B. Jakobsen M. Nei 2001 MEGA2: Molecular Evolutionary Genetics Analysis Spftware Arizona State University Tempe Arizona, USA
18. Lemeunier, F., J.R. David & L. Tsacas, 1986. The melanogaster species group in Genetics and Biology of Drosophila. 3e, 148-256.
19. A. Llopart J.M. Comeron F.G. Brunyt D. Lachaise M. Long 2002 Intron presence-absence polymorphism in Drosophila driven by positive Darwinian selection Proc. Natl. AcaD. Sci. USA 99 8121 8126
20. J.M Logsdon A. Stoltzfus W.F. Doolittle 1998 Molecular evolution: recent cases of spliceosomal intron gain? Curr. Biol. 8 R560 R563
21. M.Y. Long C. Rosenberg W. Gilbert 1995 Intron phase correlations and the evolution of the intron/exon structure of gene Proc. Natl. Acad. Sci. USA 92 12495 12499
22. M. Natarajan T.P. Hecker C.L. Gladson 2003 FAK signaling in anaplastic astrocytoma and glioblastoma tumors Cancer J. 9 126 33
23. J. Parsch C.D. Meiklejohn E. Hauschteck-jungen P. Hunziker D.L. Hartl 2001 Molecular evolution of the ocnus and janus genes in the Drosophila melanogaster species subgroup Mol. Biol. Evol. 18 801 811
24. M. Pélandakis M. Solignac 1993 Molecular phylogeny of Drosophila based on ribosomal RNA sequences J. Mol. Evol. 37 525 543
25. F. Perler A. Efstratiadis P. Lomedico W. Gilbert R. Kolodner J. Dodgoson 1980 The evolution of genes: the chicken preproinsulin gene Cell 20 555 566
26. Y. Qiu Y. Cho J.C. Cox J.D. Palmer 1998 The gain of three mitochondrial introns identifies liverworts as the earliest land plants Nature 394 671 674
27. A. Rokas J. Kathirithamby P.W.H. Holland 1999 Intron insertion as a phylogenetic character: The engrailed homeobox of strepsiptera does not indicated affinity with diptera Insect Mol. Biol. 8 527 530
28. S.W. Roy A. Fedorov W. Gilbert 2003 Large-scale comparison of intron positions in mammalian genes shows intron loss but no gain Proc.Natl. Acad. Sci. USA 100 7158 7162
29. S.W. Schaeffer E.L. Miller 1993 Estimates of linkage disequilibrium and the recombination parameter determined from segregating nucleotide sites in the alcohol dehydrogenase region of Drosophila pseudoobscura Genetics 135 541 552
30. V.A. Schawaroch 2000 Molecular phylogeny of the melanogaster species group with special emphasis on the montium subgroup City Univ New York Ph.D. Dissertation
31. W. Stephan A.D. Kirby 1993 RNA folding in Drosophila shows a distance effect for compensatory fitness interactions Genetics 135 97 103
32. D.L. Swofford 1999 PAUP*phylogenetic analysis using parsimony*and other methods Sinauer Sunderland, MA
33. R. Tarrio F. Rodriguez-Trelles F.J. Ayala 2003 A new Drosophila spliceosomal intron position is common in plants Proc. Natl. Acad. Sci. USA 100 6580 6583
34. J.D. Thompson D.G. Higgins T.J. Gibson 1994 CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice Nucl. Acids Res. 22 4673 4680
35. L.H. Throckmorton 1975 The Phylogeny ecology, and geography of Drosophila R.C. King Handbook of Genetics 3rd Plenum New York
36. B. Venkatesh Y. Ning S. Brenner 1999 Late changes in spliceosomal introns define clades in vertebrate evolution Proc. Natl. Acad. Sci. USA 96 10267 71
37. H. Wada M. Kobayashi R. Satoh H. Miyasaka Y. Shirayama 2002 Dynamic insertion-deletion of introns in deuterostome EF-1 genes J. Mol. Evol. 54 118 128
38. L. Yang J.F. Gui 2004 Positive selection on multiple antique allelic lineages of transferrin in the polyploid Carassius auratus Mol. Biol. Evol. 21 7 1264 1277
39. L. Yang L. Zhou J.F. Gui 2004 Molecular basis of transferrin polymorphism in goldfish (Carassius auratus) Genetica 121 303 313