Identification and analysis of teleost slow muscle troponin T (sTnT) and intronless TnT genes

Gene

Volumn 361, Issue 1-2, 2005, Pages 67-79

  Campinho, M A ^a,b   Power, D M ^a   Sweeney, G E ^b  

^a UNIVERSITY OF ALGARVE   (Portugal)

^b CARDIFF UNIVERSITY   (United Kingdom)

Author keywords

Gene function; Gene organization; Sea bream; Slow skeletal muscle; Troponin T

Indexed keywords

TROPONIN T;

ANIMAL TISSUE; ARTICLE; CONTROLLED STUDY; DEVELOPMENTAL STAGE; EXON; EXPRESSED SEQUENCE TAG; FAST MUSCLE; GENE; GENE CLUSTER; GENE DUPLICATION; GENE EXPRESSION; GENE LOCATION; GENE STRUCTURE; GENETIC ORGANIZATION; GENETIC TRANSCRIPTION; INTRON; LARVAL STAGE; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; ORTHOLOGY; PARSIMONY ANALYSIS; PHYLOGENY; PRIORITY JOURNAL; REVERSE TRANSCRIPTION; SEA BREAM; SEQUENCE ALIGNMENT; SLOW MUSCLE; SPECIES DIFFERENCE; TELEOST; TISSUE DISTRIBUTION; TISSUE SPECIFICITY; TROPONIN T GENE;

AMINO ACID SEQUENCE; ANIMALS; BLOTTING, NORTHERN; CLONING, MOLECULAR; DNA, COMPLEMENTARY; EXONS; GENE EXPRESSION PROFILING; INTRONS; LIVER; MOLECULAR SEQUENCE DATA; MUSCLE FIBERS, SLOW-TWITCH; MYOCARDIUM; PERCIFORMES; PHYLOGENY; PROTEIN ISOFORMS; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, AMINO ACID; TROPONIN T;

ARCHOSARGUS RHOMBOIDALIS; DANIO RERIO; LATIPES; SALMO TRUTTA; SPARUS AURATA; TAKIFUGU; TAKIFUGU RUBRIPES; TELEOSTEI; VERTEBRATA;

EID: 27144498186     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.gene.2005.07.003     Document Type: Article

References (43)

1. S.F. Altschul Gapped BLAST and PSI-BLAST: a new generation of protein database search programs Nucleic Acids Res. 25 1997 3389 3402
2. P.J. Barton Close physical linkage of human troponin genes: organization, sequence, and expression of the locus encoding cardiac troponin I and slow skeletal troponin T Genomics 57 1999 102 109
3. C.S. Blagden, P.D. Currie, P.W. Ingham, and S.M. Hughes Notochord induction of zebrafish slow muscle mediated by Sonic hedgehog Genes Dev. 11 1997 2163 2175
4. M.M. Briggs, and F. Schachat Origin of fetal troponin T: developmentally regulated splicing of a new exon in the fast troponin T gene Dev. Biol. 158 1993 503 509
5. E.A. Bucher, G.K. Dhoot, M.M. Emerson, M. Ober, and C.P. Emerson Structure and evolution of the alternatively spliced fast troponin T isoform gene J. Biol. Chem. 274 1999 17661 17670
6. F. Cortés Caderin-mediated differential cell adhesion controls slow muscle migration in the zebrafish myotome Dev. Cell 5 2003 1 20
7. S. Devoto, E. Melancon, J. Eisen, and M. Westerfield Identification of separate slow and fast muscle precursor cells in vivo, prior to somite formation Development 122 1996 3371 3380
8. H. Farza Genomic organisation, alternative splicing and polymorphisms of the human cardiac troponin T gene J. Mol. Cell Cardiol. 30 1998 1247 1253
9. W.M. Fitch Rate of change of concomitantly variable codons J. Mol. Evol. 1 1971 84 96
10. A. Force, M. Lynch, F.B. Pickett, A. Amores, Y. Yan, and J. Postlethwait Preservation of duplicated genes by complementary, degenerative mutations Genetics 151 1999 1531 1545
11. R. Gahlmann, A. Troutt, R. Wade, P. Gunning, and L. Kedes Alternative splicing generates variants in important functional domains of human slow skeletal troponin T J. Biol. Chem. 262 1987 16122 16126
12. P.M. Harrison Molecular fossils in the human genome: identification and analysis of the pseudogenes in chromosomes 21 and 22 Genome Res. 12 2002 272 280
13. A. Hinkle, and L.S. Tobacman Folding and function of the troponin tail domain J. Biol. Chem. 278 2003 506 513
14. C.D. Hsiao, W.Y. Tsai, L.S. Horng, and H.J. Tsai Molecular structure and developmental expression of the three muscle-type troponin T genes in zebrafish Dev. Dyn. 227 2003 266 279
15. Q.Q. Huang, A. Chen, and J.P. Jin Genomic sequence and structural organization of mouse slow skeletal muscle troponin T gene Gene 229 1999 1 10
16. J.P. Jin, A. Chen, and Q.Q. Huang Three alternatively spliced mouse slow skeletal muscle troponin T isoforms: conserved primary structure and regulated expression during postnatal development Gene 214 1998 121 129
17. J.P. Jin, J. Wang, and O. Ogut Developmentally regulated muscle type-specific alternative splicing of the COOH-terminal variable region of fast skeletal muscle troponin T and an aberrant splicing pathway to encode a mutant COOH-terminus Biochem. Biophys. Res. Commun. 242 1998 540 544
18. J.P. Jin, Q.Q. Huang, O. Ogut, A. Chen, and J. Wang Troponin T isoform regulation and structure-function relationships Basic Appl. Myol. 10 2000 17 26
19. J.T.M. Koumans, and H.A. Akster Myogenic cells in development and growth of fish Comp. Biochem. Physiol., A 110 1995 3 20
20. C. Koutsikopoulos, and P. Camus Incubation experimentale et developpement embryonnaire de la daurade royale, Sparus aurata (L.), a differentes temperatures Aquaculture 42 1984 117 128
21. M. Lynch, and A. Force The probability of duplicate gene preservation by subfunctionalization Genetics 154 2000 459 473
22. S.M. MacFarland, J.P. Jin, and F.V. Brozovich Troponin T isoforms modulate calcium dependence of the kinetics of the cross-bridge cycle: studies using a transgenic mouse line Arch. Biochem. Biophys. 405 2002 241 246
23. R. Marco-Ferreres, J.J. Arredondo, B. Fraile, and M. Cervera Overexpression of troponin T in Drosophila muscles causes a decrease in the levels of thin-filament proteins Biochem. J. 386 2005 145 152
24. F. Mascarello, A. Rowlerson, G. Radaelli, P.A. Scapolo, and A. Veggetti Differentiation and growth of muscle in the fish Sparus aurata (L): I. Myosin expression and organization of fibre types in lateral muscle from hatching to adult J. Muscle Res. Cell Motil. 16 1995 213 222
25. K. Nakada, J.I. Miyazaki, and T. Hirabayashi Expression of multiple troponin T isoforms in chicken breast muscle regeneration induced by sub-serious implantation Differentiation 70 2002 92 100
26. T.M. Nosek, M.A. Brotto, and J.P. Jin Troponin T isoforms alter the tolerance of transgenic mouse cardiac muscle to acidosis Arch. Biochem. Biophys. 430 2004 178 184
27. O. Ogut, and J.P. Jin Expression, zinc-affinity purification, and characterization of a novel metal-binding cluster in troponin T: metal-stabilized alpha-helical structure and effects of the NH2-terminal variable region on the conformation of intact troponin T and its association with tropomyosin Biochemistry 35 1996 16581 16590
28. S.V. Perry Troponin T: genetics, properties and function J. Muscle Res. Cell Motil. 19 1998 575 602
29. A. Polo, M. Yufera, and E. Pascual Effects of temperature on egg and larval development of Sparus aurata L. Aquaculture 92 1991 367 375
30. F. Samson A new human slow skeletal troponin T (TnTs) mRNA isoform derived from alternative splicing of a single gene Biochem. Biophys. Res. Commun. 199 1994 841 847
31. A.J. Sehnert, A. Huq, B.M. Weinstein, C. Walker, M. Fishman, and D.Y.R. Stainier Cardiac Troponin T is essential in sarcomere assembly and cardiac contractility Nat. Genet. 31 2002 106 110
32. D.L. Swofford, P.J. Waddell, J.P. Huelsenbeck, P.G. Foster, P.O. Lewis, and J.S. Rogers Bias in phylogenetic estimation and its relevance to the choice between parsimony and likelihood methods Syst. Biol. 50 2001 525 539
33. J.S. Taylor, Y. Van de Peer, I. Braasch, and A. Meyer Comparative genomics provides evidence for an ancient genome duplication event in fish Philos. Trans. R. Soc. Lond., B 356 2001 1661 1679
34. J.D. Thompson, T.J. Gibson, F. Plewniak, F. Jeanmougin, and D.G. Higgins The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools Nucleic Acids Res. 25 1997 4876 4882
35. L. Tobacman, and R. Lee Isolation and functional comparison of bovine cardiac troponin T isoforms J. Biol. Chem. 262 1987 4059 4064
36. Y. Van de Peer, J.S. Taylor, I. Braasch, and A. Meyer The ghost of selection past: rates of evolution and functional divergence of anciently duplicated genes J. Mol. Evol. 53 2001 436 446
37. A. Veggetti, F. Mascarello, P.A. Scapolo, A. Rowlerson, and M.D. Candia-Carnevali Muscle growth and myosin isoform transitions during development of a small teleost fish, Poecilia reticulata (Peters) (Atheriniformes, Poeciliidae): a histochemical, immunohistochemical, ultrastructural and morphometric study Anat. Embryol. 187 1993 353 361
38. D.M. Waddleton, D.M. Jackman, T. Bieger, and D.H. Heeley Characterisation of troponin-T from salmonid fish J. Muscle Res. Cell Motil. 20 1999 315 324
39. J. Wang, and J.P. Jin Primary structure and developmental acidic to basic transition of 13 alternatively spliced mouse fast skeletal muscle troponin T isoforms Gene 193 1997 105 114
40. M.R. Wilkins A.J. Link Protein Identification and Analysis Tools in the ExPASy Server2-D Proteome Analysis Protocols 1998 Humana Press New Jersey
41. I. Yonemura, T. Watanabe, M. Kirinoki, J.I. Miyazaki, and T. Hirabayashi Cloning of chicken slow muscle troponin T and its sequence comparison with that of human Biochem. Biophys. Res. Commun. 226 1996 200 205
42. I. Yonemura, T. Hirabayashi, and J.I. Miyazaki Heterogeneity of chicken slow skeletal muscle troponin T mRNA J. Exp. Zool. 286 2000 149 156
43. I. Yonemura, Y. Mitani, K. Nakada, S. Akutsu, and J.I. Miyazaki Developmental changes of cardiac and slow skeletal muscle troponin T expression in chicken cardiac and skeletal muscle Zool. Sci. 19 2002 215 223