The mitochondrial genome sequence of the scorpion Centruroides limpidus (Karsch 1879) (Chelicerata; Arachnida)

Gene

Volumn 360, Issue 2, 2005, Pages 92-102

  Dávila, Sonia ^a,b   Piñero, Daniel ^c,d   Bustos, Patricia ^a,b   Cevallos, Miguel A ^a,b   Dávila, Guillermo ^a,b  

^a INSTITUTO DE CIENCIAS FÍSICAS   (Mexico)

^b Instituto de Ecología ^*  (Mexico)

^c Instituto de Ecología   (Mexico)

^d UNIVERSIDAD NACIONAL AUTÓNOMA DE MÉXICO   (Mexico)

Author keywords

Arthropoda; mtDNA; Phylogenetic inference; tRNA secondary structure

Indexed keywords

ACARI; ARACHNID; ARTICLE; CENTRUROIDES LIMPIDUS; GENE ORDER; GENE SEQUENCE; GENOME; LIMULUS POLYPHEMUS; MITOCHONDRIAL GENETICS; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; SCORPION; SPIDER;

ANIMALS; ARACHNIDA; BASE COMPOSITION; BASE SEQUENCE; DNA, MITOCHONDRIAL; GENOME; MITOCHONDRIA; NUCLEIC ACID CONFORMATION; PHYLOGENY; RNA, TRANSFER;

ACARI; ARACHNIDA; ARANEAE; ARTHROPODA; CENTRUROIDES LIMPIDUS; CHELICERATA; LIMULUS POLYPHEMUS; MESOBUTHUS GIBBOSUS; SCORPIONES; XIPHOSURA;

EID: 26844566315     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.gene.2005.06.008     Document Type: Article

References (38)

1. S.F. Altschul, W. Gish, W. Miller, E.W. Myers, and D.J. Lipman Basic local alignment search tool J. Mol. Biol. 215 1990 403 410
2. L.F. Armas, C.R. Beutelspacher, and F. Martín Notas sobre la taxonomía y distribución de algunos Centruroides (Scorpiones: Buthidae) de México Revista Nicaraguana de Entomología. 32 1995 29 43
3. J.L. Boore Animal mitochondrial genomes Nucleic Acids Res. 27 1999 1767 1780
4. J.L. Boore, T.M. Collins, D. Stanton, L.L. Daehler, and W.M. Brown Deducing the pattern of arthropod phylogeny from mitochondrial DNA rearrangements Nature 376 1995 163 165
5. R. Cattaneo Different types of messenger RNA editing Annu. Rev. Genet. 25 1991 71 88
6. R. Chenna Multiple sequence alignment with the clustal series of programs Nucleic Acids Res. 31 2003 3497 3500
7. Commission on Plant Gene Nomenclature Mnemonic/numeric. 1: a database of plant-wide designations Plant. Mol. Biol. Report. Suppl 12 1994 s81 s88
8. M. Dehesa-Dávila Epidemiological characteristics of scorpions stings in Leon, Guanajuato, Mexico Toxicon 27 1989 281 286
9. A. Díaz-Nájera Alacranes de la República Mexicana Rev. Invest. Salud Publica (México) 26 1966 109 123
10. B. Ewing, L. Hillier, M. Wendl, and P. Green Base calling of automated sequencer traces using phred. I. Accuracy assessment Genome Res. 8 1998 175 185
11. J. Felsenstein Confidence limits on phylogenies: an approach using the bootstrap Evolution 39 1985 783 791
12. V. Fet, W.D. Sissom, G. Lowe, and M.E. Braunwalder Catalog of the Scorpions of the World (1758-1998) 2000 N. Y. Entomol. Soc. New York
13. P.K. Flook, C.H. Rowell, and G. Gellissen The sequence, organization, and evolution of the Locusta migratoria mitochondrial genome J. Mol. Evol. 41 1995 928 941
14. M.P. Francino, and H. Ochman Strand asymmetries in DNA evolution Trends Genet. 13 1997 240 245
15. D. Gagliardi, P.P. Stepien, R.J. Temperley, R.N. Lightowlers, and Z.M. Chrzanowska-Lightowlers Messenger RNA stability in mitochondria: different means to an end Trends Genet. 20 2004 260 267
16. J.R. Garey, and D.R. Wolstenholme Platyhelminth mitochondrial DNA: evidence for early evolutionary origin of a tRNA(serAGN) that contains a dihydrouridine arm replacement loop, and of serine-specifying AGA and AGG codons J. Mol. Evol. 28 1989 374 387
17. C. Hoffman Los escorpiones de México II, Buthidae An. Inst. Biol. (México) 3 1932 243 361
18. U.W. Hwang, C.J. Park, T.S. Yong, and W. Kim One-step PCR amplification of complete arthropod mitochondrial genomes Mol. Phylogenet. Evol. 19 2001 345 352
19. S. Kumar, K. Tamura, and M. Nei MEGA: Molecular Evolutionary Genetic Analysis. Version 1.0 1993 Pennsylvania State University Park
20. D.V. Lavrov, J.L. Boore, and W.M. Brown The complete mitochondrial DNA sequence of the horseshoe crab Limulus polyphemus Mol. Biol. Evol. 17 2000 813 824
21. T.M. Lowe, and S.R. Eddy tRNAscan-SE: a program for improved detection of transfer RNA in genomic sequence Nucleic Acids Res. 25 1997 955 964
22. S.E. Masta, and J.L. Boore The complete mitochondrial genome sequence of the spider Habronattus oregonensis reveals rearranged and extremely truncated tRNAs Mol. Biol. Evol. 21 2004 893 902
23. A.D. Miller, T.T. Nguyen, C.P. Burridge, and C.M. Austin Complete mitochondrial DNA sequence of the Australian freshwater crayfish, Cherax destructor (Crustacea: Decapoda: Parastacidae): a novel gene order revealed Gene 331 2004 65 72
24. D. Ojala, J. Montoya, and G. Attardi tRNA punctuation model of RNA processing in human mitochondria Nature 290 1981 470 474
25. N.T. Perna, and T.D. Kocher Patterns of nucleotide composition at fourfold degenerate sites of animal mitochondrial genomes J. Mol. Evol. 41 1995 353 358
26. Y. Qiu, D. Song, K. Zhou, and H. Sun Mitochondrial sequences of Heptathela hangzhouensis and Ornithoctonus huwena reveal unique gene arrangements and atypical tRNAs J. Mol. Evol. 60 2005 57 71
27. K.J. Sambrook, and D.W. Russell 3rd ed. Molecular Cloning: a Laboratory Manual vols. 1-3 2001 Cold Spring Harbor Laboratory Press
28. J.W. Shultz Evolutionary morphology and phylogeny of Arachnida Cladistics 6 1990 1 38
29. H.C. Stahnke, and M. Calos A key to the species of the genus Centruroides Marx (Scorpionida: Buthidae) Entomol. Newsl. 88 1977 111 120
30. D.L. Swofford PAUP* Phylogenetic Analysis Using Parsimony (*and other Methods). Version 4 1998 Sinauer Associates Sunderland
31. F. Tajima Simple methods for testing molecular clock hypothesis Genetics 135 1993 599 607
32. M.L. Thao, L. Baumann, and P. Baumann Organization of the mitochondrial genomes of whiteflies, aphids, and psyllids (Hemiptera, Sternorrhyncha) BMC Evol. Biol. 4 2004 25
33. W.I. Towler, J.P. Saavedra, B. Gantenbein, and V. Fet Mitochondrial DNA reveals divergent phylogeny in tropical Centruroides (Scorpiones: Buthidae) from Mexico Biogeographica 77 2001 157 172
34. Weygoldt, P., Paulus H.F., 1979. Untersuchungen zur morphologie, taxonomie und phylogenie der Chelicerata. Z. Zool. Syst. Evolut.-forsh. 17, 85-116, 177-200.
35. W.C. Wheeler, and C.Y. Hayashi The phylogeny of the extant chelicerate orders Cladistics 14 1998 173 192
36. D.R. Wolstenholme Animal mitochondrial DNA: structure and evolution D.R. Wolstenholme K.W. Jeon Mitochondrial Genomes 1992 Academic Press New York 173 216
37. S. Yokobori, and S. Pääbo Transfer RNA editing in land snail mitochondria Proc. Natl. Acad. Sci. U. S. A. 92 1995 10432 10435
38. S. Yokobori, and S. Pääbo tRNA editing in metazoans Nature 377 6549 1995 490