메뉴 건너뛰기




Volumn 21, Issue 5, 2004, Pages 893-902

The Complete Mitochondrial Genome Sequence of the Spider Habronattus oregonensis Reveals Rearranged and Extremely Truncated tRNAs

Author keywords

Aminoacyl acceptor stem; Gene rearrangement; Genome size; Habronattus oregonensis; Mitochondrial genome; tRNA editing

Indexed keywords

CYTOCHROME C OXIDASE; MITOCHONDRIAL DNA; MITOCHONDRIAL PROTEIN; TRANSFER RNA;

EID: 1942533489     PISSN: 07374038     EISSN: None     Source Type: Journal    
DOI: 10.1093/molbev/msh096     Document Type: Article
Times cited : (191)

References (49)
  • 1
    • 0027898410 scopus 로고
    • The mitochondrial genome of the mosquito Anopheles gambiae: DNA sequence, genome organization, and comparisons with mitochondrial sequences of other insects
    • Beard, C. B., D. M. Hamm, and F. H. Collins. 1993. The mitochondrial genome of the mosquito Anopheles gambiae: DNA sequence, genome organization, and comparisons with mitochondrial sequences of other insects. Insect Mol. Biol. 2:103-124.
    • (1993) Insect Mol. Biol. , vol.2 , pp. 103-124
    • Beard, C.B.1    Hamm, D.M.2    Collins, F.H.3
  • 2
    • 0031796295 scopus 로고    scopus 로고
    • Mitochondrial gene order is not conserved in arthropods: Prostriate and metastriate tick mitochondrial genomes
    • Black, W. C., IV, and R. L. Roehrdanz. 1998. Mitochondrial gene order is not conserved in arthropods: prostriate and metastriate tick mitochondrial genomes. Mol. Biol. Evol. 15:1772-1785.
    • (1998) Mol. Biol. Evol. , vol.15 , pp. 1772-1785
    • Black IV, W.C.1    Roehrdanz, R.L.2
  • 3
    • 0033561361 scopus 로고    scopus 로고
    • Animal mitochondrial genomes
    • Boore, J. L. 1999. Animal mitochondrial genomes. Nucleic Acids Res. 27:1767-1780.
    • (1999) Nucleic Acids Res. , vol.27 , pp. 1767-1780
    • Boore, J.L.1
  • 4
    • 0031769998 scopus 로고    scopus 로고
    • Big trees from little genomes: Mitochondrial gene order as a phylogenetic tool
    • Boore, J. L., and W. M. Brown. 1998. Big trees from little genomes: mitochondrial gene order as a phylogenetic tool. Curr. Opin. Genet. Dev. 8:668-674.
    • (1998) Curr. Opin. Genet. Dev. , vol.8 , pp. 668-674
    • Boore, J.L.1    Brown, W.M.2
  • 5
    • 0028976102 scopus 로고
    • Deducing the pattern of arthropod phylogeny from mitochondrial DNA rearrangements
    • Boore, J. L., T. M. Collins, D. Stanton, L. L. Daehler, and W. M. Brown. 1995. Deducing the pattern of arthropod phylogeny from mitochondrial DNA rearrangements. Nature 376:163-167.
    • (1995) Nature , vol.376 , pp. 163-167
    • Boore, J.L.1    Collins, T.M.2    Stanton, D.3    Daehler, L.L.4    Brown, W.M.5
  • 6
    • 0032537194 scopus 로고    scopus 로고
    • Gene translocation links insects and crustaceans
    • Boore, J. L., D. V. Lavrov, and W. M. Brown. 1998. Gene translocation links insects and crustaceans. Nature 392: 667-668.
    • (1998) Nature , vol.392 , pp. 667-668
    • Boore, J.L.1    Lavrov, D.V.2    Brown, W.M.3
  • 8
    • 0022423413 scopus 로고
    • The ribosomal RNA genes of Drosophila mitochondrial DNA
    • Clary, D. O., and D. R. Wolstenholme. 1985. The ribosomal RNA genes of Drosophila mitochondrial DNA. Nucleic Acids Res. 13:4029-4045.
    • (1985) Nucleic Acids Res. , vol.13 , pp. 4029-4045
    • Clary, D.O.1    Wolstenholme, D.R.2
  • 9
    • 0019978703 scopus 로고
    • Replication of animal mitochondrial DNA
    • Clayton, D. A. 1982. Replication of animal mitochondrial DNA. Cell 28:693-705.
    • (1982) Cell , vol.28 , pp. 693-705
    • Clayton, D.A.1
  • 10
    • 0027201750 scopus 로고
    • On the evolution of RNA editing
    • Covello, P. S., and M. W. Gray. 1993. On the evolution of RNA editing. TIG 9:265-268.
    • (1993) TIG , vol.9 , pp. 265-268
    • Covello, P.S.1    Gray, M.W.2
  • 11
    • 0001968230 scopus 로고
    • Primary, secondary, and tertiary structures of tRNAs
    • D. Söll and U. L. RajBhandary, eds. ASM Press, Washington, DC
    • Dirheimer, G., G. Keith, P. Dumas, and E. Westhof. 1995. Primary, secondary, and tertiary structures of tRNAs. Pp. 93-126 in D. Söll and U. L. RajBhandary, eds. tRNA: Structure, biosynthesis, and function. ASM Press, Washington, DC.
    • (1995) tRNA: Structure, Biosynthesis, and Function , pp. 93-126
    • Dirheimer, G.1    Keith, G.2    Dumas, P.3    Westhof, E.4
  • 12
    • 0033088439 scopus 로고    scopus 로고
    • Relationships among the cyclostome braconid (Hymenoptera: Braconidae) subfamilies inferred from a mitochondrial tRNA gene rearrangement
    • Dowton, M. 1999. Relationships among the cyclostome braconid (Hymenoptera: Braconidae) subfamilies inferred from a mitochondrial tRNA gene rearrangement. Mol. Phylogenet. Evol. 11:283-287.
    • (1999) Mol. Phylogenet. Evol. , vol.11 , pp. 283-287
    • Dowton, M.1
  • 13
    • 0030976320 scopus 로고    scopus 로고
    • Strand asymmetries in DNA evolution
    • Francino, M. P., and H. Ochman. 1997. Strand asymmetries in DNA evolution. TIG 13:240-245.
    • (1997) TIG , vol.13 , pp. 240-245
    • Francino, M.P.1    Ochman, H.2
  • 14
    • 0027134973 scopus 로고
    • Muller's ratchet and mutational meltdowns
    • Gabriel, W., M. Lynch, and R. Bürger. 1993. Muller's ratchet and mutational meltdowns. Evolution 47:1744-1757.
    • (1993) Evolution , vol.47 , pp. 1744-1757
    • Gabriel, W.1    Lynch, M.2    Bürger, R.3
  • 15
    • 0009740099 scopus 로고    scopus 로고
    • Speculations on the origin and evolution of editing
    • B. L. Bass, ed. Oxford University Press, Oxford, UK
    • Gray, M. R. 2001. Speculations on the origin and evolution of editing. Pp. 160-184 in B. L. Bass, ed. RNA editing. Oxford University Press, Oxford, UK.
    • (2001) RNA Editing , pp. 160-184
    • Gray, M.R.1
  • 16
    • 0031058382 scopus 로고    scopus 로고
    • Molecular phylogenetics at the populations/species interface in cave spiders of the southern Appalachians (Araneae: Nesticidae: Nesticus)
    • Hedin, M. C. 1997a. Molecular phylogenetics at the populations/species interface in cave spiders of the southern Appalachians (Araneae: Nesticidae: Nesticus). Mol. Biol. Evol. 14: 309-324.
    • (1997) Mol. Biol. Evol. , vol.14 , pp. 309-324
    • Hedin, M.C.1
  • 17
    • 0031405714 scopus 로고    scopus 로고
    • Speciational history in a diverse clade of habitat-specialized spiders (Araneae: Nesticidae: Nesticus): Inferences from geographic-based sampling
    • -. 1997b. Speciational history in a diverse clade of habitat-specialized spiders (Araneae: Nesticidae: Nesticus): inferences from geographic-based sampling. Evolution 51:1929-1945.
    • (1997) Evolution , vol.51 , pp. 1929-1945
  • 18
    • 0034882968 scopus 로고    scopus 로고
    • The complete mitochondrial genome of the articulate brachiopod Terebratalia transversa
    • Helfenbein, K. G., W. M. Brown, and J. L. Boore. 2001. The complete mitochondrial genome of the articulate brachiopod Terebratalia transversa. Mol. Biol. Evol. 18:1734-1744.
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 1734-1744
    • Helfenbein, K.G.1    Brown, W.M.2    Boore, J.L.3
  • 19
    • 0037292560 scopus 로고    scopus 로고
    • Speciation on a conveyor belt: Sequential colonization of the Hawaiian islands by Orsonwelles spiders (Araneae, Linyphiidae)
    • Hormiga, G., M. Arnedo, and R. G. Gillespie. 2003. Speciation on a conveyor belt: sequential colonization of the Hawaiian islands by Orsonwelles spiders (Araneae, Linyphiidae). Syst. Biol. 52:70-88.
    • (2003) Syst. Biol. , vol.52 , pp. 70-88
    • Hormiga, G.1    Arnedo, M.2    Gillespie, R.G.3
  • 20
    • 0036018648 scopus 로고    scopus 로고
    • A test for reproductive separation of alternate generations in a biennial spider, Araneus diadematus (Araneae, Araneidae)
    • Johannesen, J., and S. Toft. 2002. A test for reproductive separation of alternate generations in a biennial spider, Araneus diadematus (Araneae, Araneidae). J. Arachnol. 30:654-69.
    • (2002) J. Arachnol. , vol.30 , pp. 654-669
    • Johannesen, J.1    Toft, S.2
  • 21
    • 0034781162 scopus 로고    scopus 로고
    • Population history of Eresus cinnaberinus (Arancae: Eresidae) colour variants at a putative species transition
    • Johannesen, J., and M. Veith. 2001. Population history of Eresus cinnaberinus (Arancae: Eresidae) colour variants at a putative species transition. Heredity 87:114-124.
    • (2001) Heredity , vol.87 , pp. 114-124
    • Johannesen, J.1    Veith, M.2
  • 22
    • 0033963849 scopus 로고    scopus 로고
    • Complete sequence of the mitochondrial DNA of the primitive opistobranch gastropod Pupa strigosa: Systematic implication of the genome organization
    • Kurabayashi, A., and R. Ueshima. 2000. Complete sequence of the mitochondrial DNA of the primitive opistobranch gastropod Pupa strigosa: systematic implication of the genome organization. Mol. Biol. Evol. 17:266-277.
    • (2000) Mol. Biol. Evol. , vol.17 , pp. 266-277
    • Kurabayashi, A.1    Ueshima, R.2
  • 23
    • 0034026576 scopus 로고    scopus 로고
    • The complete mitochondrial DNA sequence of the horseshoe crab Limulus polyphemus
    • Lavrov, D. V., J. L. Boore, and W. M. Brown. 2000. The complete mitochondrial DNA sequence of the horseshoe crab Limulus polyphemus. Mol. Biol. Evol. 17:813-824.
    • (2000) Mol. Biol. Evol. , vol.17 , pp. 813-824
    • Lavrov, D.V.1    Boore, J.L.2    Brown, W.M.3
  • 24
    • 0034610287 scopus 로고    scopus 로고
    • A novel type of RNA editing occurs in the mitochondrial tRNAs of the centipede Lithobius forticatus
    • Lavrov, D. V., W. M. Brown, and J. L. Boore. 2000. A novel type of RNA editing occurs in the mitochondrial tRNAs of the centipede Lithobius forticatus. Proc. Natl. Acad. Sci. USA 97:13738-13742.
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 13738-13742
    • Lavrov, D.V.1    Brown, W.M.2    Boore, J.L.3
  • 25
    • 0027500536 scopus 로고
    • Editing of transfer RNAs in Acanthamoeba castellanii mitochondria
    • Lonergan, K. M., and M. W. Gray. 1993. Editing of transfer RNAs in Acanthamoeba castellanii mitochondria. Science 259:812-816.
    • (1993) Science , vol.259 , pp. 812-816
    • Lonergan, K.M.1    Gray, M.W.2
  • 26
    • 0030854739 scopus 로고    scopus 로고
    • tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
    • Lowe, T. M., and S. R. Eddy. 1997. tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25:955-964.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 955-964
    • Lowe, T.M.1    Eddy, S.R.2
  • 27
    • 0030034587 scopus 로고    scopus 로고
    • Mutation accumulation in transfer RNAs: Molecular evidence for Muller's ratchet in mitochondrial genomes
    • Lynch, M. 1996. Mutation accumulation in transfer RNAs: molecular evidence for Muller's ratchet in mitochondrial genomes. Mol. Biol. Evol. 13:209-220.
    • (1996) Mol. Biol. Evol. , vol.13 , pp. 209-220
    • Lynch, M.1
  • 28
    • 0030802496 scopus 로고    scopus 로고
    • Mutation accumulation in nuclear, organelle, and prokaryotic transfer RNA genes
    • -. 1997. Mutation accumulation in nuclear, organelle, and prokaryotic transfer RNA genes. Mol. Biol. Evol. 14: 914-925.
    • (1997) Mol. Biol. Evol. , vol.14 , pp. 914-925
  • 29
    • 0030966808 scopus 로고    scopus 로고
    • Evolutionary shifts in three major structural features of the mitochondrial genome among iguanian lizards
    • Macey, J. R., A. Larson, N. B. Ananjeva, and T. J. Papenfuss. 1997. Evolutionary shifts in three major structural features of the mitochondrial genome among iguanian lizards. J. Mol. Evol. 44:660-674.
    • (1997) J. Mol. Evol. , vol.44 , pp. 660-674
    • Macey, J.R.1    Larson, A.2    Ananjeva, N.B.3    Papenfuss, T.J.4
  • 30
    • 0034350431 scopus 로고    scopus 로고
    • Evolution and phylogenetic information content of mitochondrial genomic structural features illustrated with acrodont lizards
    • Macey, J. R., J. A. Schulte II, and A. Larson. 2000. Evolution and phylogenetic information content of mitochondrial genomic structural features illustrated with acrodont lizards. Syst. Biol. 49:257-277.
    • (2000) Syst. Biol. , vol.49 , pp. 257-277
    • Macey, J.R.1    Schulte II, J.A.2    Larson, A.3
  • 32
    • 0033945896 scopus 로고    scopus 로고
    • Mitochondrial sequence evolution in spiders: Intraspecific variation in tRNAs lacking the TΨC arm
    • Masta, S. E. 2000. Mitochondrial sequence evolution in spiders: intraspecific variation in tRNAs lacking the TΨC arm. Mol. Biol. Evol. 17:1091-1100.
    • (2000) Mol. Biol. Evol. , vol.17 , pp. 1091-1100
    • Masta, S.E.1
  • 34
    • 1842870035 scopus 로고    scopus 로고
    • The complete sequence of the mitochondrial genome of the honeybee ectoparasite mite Varroa destructor (Acari: Mesostigmata)
    • Navajas, M., Y. Le Conte, M. Solignac, S. Cros-Arteil, and J. M. Cornuet. 2002. The complete sequence of the mitochondrial genome of the honeybee ectoparasite mite Varroa destructor (Acari: Mesostigmata). Mol. Biol. Evol. 19:2313-2317.
    • (2002) Mol. Biol. Evol. , vol.19 , pp. 2313-2317
    • Navajas, M.1    Le Conte, Y.2    Solignac, M.3    Cros-Arteil, S.4    Cornuet, J.M.5
  • 35
    • 0037029027 scopus 로고    scopus 로고
    • Ser having a short T arm and lacking the entire D arm
    • Ser having a short T arm and lacking the entire D arm. FEBS Lett. 514:37-43.
    • (2002) FEBS Lett. , vol.514 , pp. 37-43
    • Ohtsuki, T.1    Kawai, G.2    Watanabe, K.3
  • 36
    • 0019444843 scopus 로고
    • tRNA punctuation model of RNA processing in human mitochondria
    • Ojala, D., J. Montoya, and G. Attardi. 1981. tRNA punctuation model of RNA processing in human mitochondria. Nature 290:470-474.
    • (1981) Nature , vol.290 , pp. 470-474
    • Ojala, D.1    Montoya, J.2    Attardi, G.3
  • 37
    • 0025045479 scopus 로고
    • A set of tRNAs that lack either the TψC arm or the dihydrouridine arm: Towards a minimal tRNA adaptor
    • Okimoto, R., and D. R. Wolstenholme. 1990. A set of tRNAs that lack either the TψC arm or the dihydrouridine arm: towards a minimal tRNA adaptor. EMBO J. 9:3405-3411.
    • (1990) EMBO J. , vol.9 , pp. 3405-3411
    • Okimoto, R.1    Wolstenholme, D.R.2
  • 38
    • 0029049426 scopus 로고
    • Patterns of nucleotide composition at fourfold degenerate sites of animal mitochondrial genomes
    • Perna, N. T., and T. D. Kocher. 1995. Patterns of nucleotide composition at fourfold degenerate sites of animal mitochondrial genomes. J. Mol. Evol. 41:353-358.
    • (1995) J. Mol. Evol. , vol.41 , pp. 353-358
    • Perna, N.T.1    Kocher, T.D.2
  • 39
    • 0036269310 scopus 로고    scopus 로고
    • Novel rearrangements of arthropod mitochondrial DNA detected with long-PCR: Applications to arthropod phylogeny and estimation
    • Roehrdanz, R. L., M. E. Degrugillier, and W. C. Black, IV. 2002. Novel rearrangements of arthropod mitochondrial DNA detected with long-PCR: applications to arthropod phylogeny and estimation. Mol. Biol. Evol. 19:841-849.
    • (2002) Mol. Biol. Evol. , vol.19 , pp. 841-849
    • Roehrdanz, R.L.1    Degrugillier, M.E.2    Black IV, W.C.3
  • 41
    • 0025231031 scopus 로고
    • Evolutionary morphology and phylogeny of arachnida
    • Shultz, J. W. 1990. Evolutionary morphology and phylogeny of arachnida. Cladistics 6:1-38.
    • (1990) Cladistics , vol.6 , pp. 1-38
    • Shultz, J.W.1
  • 42
    • 0027301017 scopus 로고
    • The phylogeny of echinoderm classes based on mitochondrial gene arrangements
    • Smith, M. J., A. Arndt, S. Gorski, and E. Fajber. 1993. The phylogeny of echinoderm classes based on mitochondrial gene arrangements. J. Mol. Evol. 36:545-554.
    • (1993) J. Mol. Evol. , vol.36 , pp. 545-554
    • Smith, M.J.1    Arndt, A.2    Gorski, S.3    Fajber, E.4
  • 43
    • 0029971712 scopus 로고    scopus 로고
    • Complete DNA sequence of the mitochondrial genome of Cepaea nemoralis (Gastropoda: Pulmonata)
    • Terrett, J. A., S. Miles, and R. H. Thomas. 1996. Complete DNA sequence of the mitochondrial genome of Cepaea nemoralis (Gastropoda: Pulmonata). J. Mol. Evol. 42:160-168.
    • (1996) J. Mol. Evol. , vol.42 , pp. 160-168
    • Terrett, J.A.1    Miles, S.2    Thomas, R.H.3
  • 44
    • 0031937720 scopus 로고    scopus 로고
    • Evolution and systematics of the Chelicerata
    • Weygoldt, P. 1998. Evolution and systematics of the Chelicerata. Exp. Appl. Acarol. 22:63-79.
    • (1998) Exp. Appl. Acarol. , vol.22 , pp. 63-79
    • Weygoldt, P.1
  • 45
    • 0000910719 scopus 로고    scopus 로고
    • The phylogeny of the extant chelicerate orders
    • Wheeler, W. C., and C. Y. Hayashi. 1998. The phylogeny of the extant chelicerate orders. Cladistics 14:173-192.
    • (1998) Cladistics , vol.14 , pp. 173-192
    • Wheeler, W.C.1    Hayashi, C.Y.2
  • 46
    • 0027083319 scopus 로고
    • Animal mitochondrial DNA: Structure and evolution
    • D. R. Wolstenholme and K. W. Jeon, eds. Academic Press, New York
    • Wolstenholme, D. R. 1992. Animal mitochondrial DNA: structure and evolution. Pp. 173-216 in D. R. Wolstenholme and K. W. Jeon, eds. Mitochondrial genomes. Academic Press, New York.
    • (1992) Mitochondrial Genomes , pp. 173-216
    • Wolstenholme, D.R.1
  • 48
    • 0031035811 scopus 로고    scopus 로고
    • Evolution of pulmonate gastropod mitochondrial genomes: Comparisons of gene organizations of Euhadra, Cepaea and Albinaria and implications of unusual tRNA secondary structures
    • Yamazaki, N., R. Ueshima, J. A. Terrett et al. (12 co-authors). 1997. Evolution of pulmonate gastropod mitochondrial genomes: comparisons of gene organizations of Euhadra, Cepaea and Albinaria and implications of unusual tRNA secondary structures. Genetics 145:749-758.
    • (1997) Genetics , vol.145 , pp. 749-758
    • Yamazaki, N.1    Ueshima, R.2    Terrett, J.A.3
  • 49
    • 0028865434 scopus 로고
    • Transfer RNA editing in land snail mitochondria
    • Yokobori, S., and S. Pääbo. 1995. Transfer RNA editing in land snail mitochondria. Proc. Natl. Acad. Sci. USA. 92:10432-10435.
    • (1995) Proc. Natl. Acad. Sci. USA , vol.92 , pp. 10432-10435
    • Yokobori, S.1    Pääbo, S.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.