Calorimetric unfolding of intramolecular triplexes: Length dependence and incorporation of single at → TA substitutions in the duplex domain

Journal of Physical Chemistry B

Volumn 109, Issue 38, 2005, Pages 18177-18183

  Shikiya, Ronald ^a   Marky, Luis A ^a  

^a UNIVERSITY OF NEBRASKA MEDICAL CENTER   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

GENE EXPRESSION; INTRAMOLECULAR TRIPLEXES; TRIPLEX FORMATION;

DNA; GENES; SPECIFIC HEAT; SUBSTITUTION REACTIONS; THERMODYNAMICS; ULTRAVIOLET SPECTROSCOPY;

CALORIMETRY;

OLIGODEOXYRIBONUCLEOTIDE;

ARTICLE; CALORIMETRY; CHEMICAL STRUCTURE; CHEMISTRY; CIRCULAR DICHROISM; CONFORMATION; DIFFERENTIAL SCANNING CALORIMETRY; DNA DENATURATION; GENOME; HUMAN; NUCLEOTIDE SEQUENCE; THERMODYNAMICS; ULTRAVIOLET SPECTROPHOTOMETRY;

BASE SEQUENCE; CALORIMETRY; CALORIMETRY, DIFFERENTIAL SCANNING; CIRCULAR DICHROISM; GENOME, HUMAN; HUMANS; MODELS, MOLECULAR; NUCLEIC ACID CONFORMATION; NUCLEIC ACID DENATURATION; OLIGODEOXYRIBONUCLEOTIDES; SPECTROPHOTOMETRY, ULTRAVIOLET; THERMODYNAMICS;

EID: 26844529220     PISSN: 15206106     EISSN: None     Source Type: Journal    
DOI: 10.1021/jp052327y     Document Type: Article

References (31)

1. Juliano, R. L.; Astriab-Fisher, A.; Falke, D. Mol. Interventions 2001, 1, 40.
2. Crooke, S. T. Biochim. Biophys. Acta 1999, 1489, 31.
3. Helene, C. Eur. J. Cancer 1991, 27, 1466.
4. Helene, C. Eur. J. Cancer 1994, 30A, 1721.
5. Praseuth, D.; Guieysse, A. L.; Helene, C. Biochim. Biophys. Acta 1999, 1489, 181.
6. Thuong, N. T.; Helene, C. Angew. Chem., Int. Ed. Engl. 1993, 32, 666.
7. Soyfer, V. N.; Potaman, V. N. Triple-Helical Nucleic Acids; Springer-Verlag: New York, 1996.
8. Maher, L. J. I.; Wold, B.; Dervan, P. B. Science 1989, 245, 725.
9. Neidle, S. Anti-Cancer Drug Des. 1997, 12, 433.
10. Brown, P. M.; Madden, C. A.; Fox, K. R. Biochemistry 1998, 37, 16139.
11. Cheng, Y. K.; Pettitt, B. M. Prog. Biophys. Mol. Biol. 1992, 58, 225.
12. Keppler, M. D.; Fox, K. R. Nucleic Acids Res. 1997, 25, 4644.
13. Beal, P. A.; Dervan, P. B. Science 1991, 251, 1360.
14. Chen, F. M. Biochemistry 1991, 30, 4472.
15. Schroth, G. P.; Ho, P. S. Nucleic Acids Res. 1995, 23, 1977.
16. Marky, L. A.; Blumenfeld, K. S. Biopolymers 1983, 22, 1247.
17. Marky, L. A.; Breslauer, K. J. Biopolymers 1987, 26, 1601.
18. Plum, G. E.; Breslauer, K. J. J. Mol. Biol. 1995, 248, 679.
19. Soto, A. M. Thermodynamic for the Unfolding of Non-Canonical Nucleic Acids: Bent Duplexes, Okazaki Fragments, and DNA Triplexes. Doctoral Dissertation, University of Nebraska Medical Center, Omaha, NE, 2002.
20. Soto, A. M.; Marky, L. A. Biochemistry 2002, 41, 12475.
21. Rentzeperis, D. Thermodynamics and Ligand Interactions of DNA Hairpins. Doctoral Dissertation, New York University, New York, 1994; p 246.
22. Rentzeperis, D.; Marky, L. A. J. Am. Chem. Soc. 1995, 117, 5423.
23. Manning, G. Q. Rev. Biophys. 1978, 11, 179.
24. Kamiya, M.; Torigoe, H.; Shindo, H.; Sarai, A. J. Am. Chem. Soc. 1996, 118, 4532.
25. Soto, A. M.; Loo, J.; Marky, L. A. J. Am. Chem. Soc. 2002, 124, 14355.
26. Rentzeperis, D.; Shikiya, R.; Maiti, S.; Ho, J.; Marky, L. A. J. Phys. Chem. B 2002, 106, 9945.
27. Conway, B. E. Ionic Hydration in Chemistry and Biophysics; Elsevier: New York, 1981.
28. Tunis, M. J.; Hearst, J. E. Biopolymers 1968, 6, 1325.
29. Tunis, M. J.; Hearst, J. E. Biopolymers 1968, 6, 1345.
30. Roberts, R. W.; Crothers, D. M. Science 1992, 258, 1463.
31. SantaLucia, J. J.; Allawi, H. T.; Seneviratne, A. Biochemistry 1996, 55, 3555.