Triple-helix formation at different positions on nucleosomal DNA

Biochemistry

Volumn 37, Issue 46, 1998, Pages 16139-16151

  Brown, Philip M ^a,b   Madden, Christopher A ^a   Fox, Keith R ^a  

^a UNIVERSITY OF SOUTHAMPTON   (United Kingdom)

^b UNIVERSITY OF CAMBRIDGE   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

DEOXYRIBONUCLEASE I; DNA; DNA FRAGMENT; OLIGONUCLEOTIDE; PURINE;

ANIMAL CELL; ARTICLE; CHICKEN; NONHUMAN; NUCLEOSOME; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; TRIPLE HELIX;

BASE SEQUENCE; DNA; MOLECULAR SEQUENCE DATA; NUCLEIC ACID CONFORMATION; NUCLEOSOMES; OLIGODEOXYRIBONUCLEOTIDES; RNA, TRANSFER, TYR;

EID: 0032542023     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi981768n     Document Type: Article

References (52)

1. Sinden, R. R. (1994) DNA Structure and Function, Acadmic Press, New York.
2. Soyfer, V. N., and Potaman, V. N. (1996) Triple-helical Nucleic Acids, Springer-Verlag, New York.
3. Wells, R. D., Collier, D. A., Hanvey, J. C. Shimizu, M., and Wohlrab, F. (1988) FASEB J. 2, 2939-2949.
4. Frank-Kamenetskii, M. D., and Mirkin, S. M. (1995) Annu. Rev. Biochem. 64, 65-95.
5. Moser, H. E., and Dervan, P. B. (1987) Science 238, 645-650.
6. Sun, J.-S. and Hélène, C. (1993) Curr. Opin. Struct. Biol. 3, 345-356.
7. Thuong, N. T., and Hélène, C. (1993) Angew. Chem. 32, 666-690.
8. Amirhaeri, S., Wohlrab, F., and Wells, R. D. (1995) J. Biol. Chem. 270, 3313-3319.
9. Brahmachari, S. K., Sarkar, P. S., Raghavan, S., Narayan, M., and Matai, M. K. (1997) Gene 190, 17-26.
10. Hélène, C. (1991) Anticancer Drug Des. 6, 569-584.
11. Hélène, C. (1993) Curr. Opin. Biotechnol. 4, 29-36.
12. Chubb, J. M., and Hogan, M. E. (1992) Trends Biotechnol. 10, 132-136.
13. Chan, P. P., and Glazer, P. M. (1997) J. Mol. Med. 75, 267-282.
14. Lee, J. S., Wordsworth, M. L., Latimer, L. J. P., and Morgan, A. R. (1984) Nucleic Acids. Res. 12, 6603-6614.
15. Xodo, L. E., Manzini, G., Quadrifoglio, F., van der Marel, G., and van Boom, J. (1991) Nucleic Acids Res. 19, 5625-5631.
16. Beal, P. A., and Dervan, P. B. (1991) Science 251, 1360-1363.
17. Radhakrishnan, I., and Patel, D. J. (1993) Structure 1, 135-152.
18. Radhakrishnan, I., de los Santos, C., and Patel, D. J. (1993) J. Mol. Biol. 234, 188-197.
19. Finch, J. T., Lutter, L. C., Rhodes, D., Brown, R. S., Rushton, B., Levitt, M., and Klug, A. (1977) Nature 269, 29-36.
20. Richmond, T. J., Finch, J. T., Rushton, B., Rhodes, D., and Klug, A. (1984) Nature 311, 532-537.
21. Burlingame, R. W., Love, W. E., Wang, B.-C., Hamlin, R., Xuong, N.-H. and Moudrianakis, E. N. (1985) Science 228, 546-553.
22. Luger, K., Mäder, A. W., Richmond, R. K., Sargent, D. F., and Richmond, T. J. (1997) Nature 389, 251-260.
23. Ramsay, N. (1986) J. Mol. Biol. 189, 179-188.
24. Drew, H. R., and Calladine, C. R. (1987) J. Mol. Biol. 195, 143-173.
25. Drew, H. R., and Travers, A. A. (1985) J. Mol. Biol. 186, 773-790.
26. Pennings, S., Muyldermans, S., Meersseman, G., and Wyns, L. (1989) J. Mol. Biol. 207, 183-192.
27. Hayes, J. J., Tullius, T. D., and Wolffe, A. P. (1990) Proc. Natl. Acad. Sci. U.S.A. 87, 7405-7409.
28. Travers, A. A. (1989) Annu. Rev. Biochem. 58, 427-452.
29. Kunkel, G. R., and Martinson, H. G. (1981) Nucleic Acids Res. 9, 6859-6888.
30. Puhl, H. L., Gudibande, S. R., and Behe, M. J. (1991) J. Mol. Biol. 222, 1149-1160.
31. Fox, K. R. (1992) Nucleic Acids Res. 20, 1235-1242.
32. Schrader, T. E., and Crothers, D. M. (1989) Proc. Natl. Acad. Sci. U.S.A. 86, 7418-7422.
33. Hayes, J. J., Clark, D. J., and Wolffe. A. P. (1991) Proc. Natl. Acad. Sci U.S.A. 88, 6829-6833.
34. Hayes, J. J., Bashkin, J., Tullius, T. D., and Wolffe, A. P. (1991) Biochemistry 30, 8434-8440.
35. Espinás, M. L., Jimenez-Garcia, E., Martinez-Balbas, A., and Azorin, F. (1996) J. Biol. Chem. 271, 31807-31812.
36. Westin, L., Blomquist, P., Milligan, J. F., and Wrange, Ö. (1995) Nucleic Acids Res. 23, 2184-2191.
37. Brown, P. M., and Fox, K. R. (1996) Biochem. J. 319, 607-611.
38. Wilson, W. D., Tanious, F. A., Mizan, S., Yao, S., Kiselyov, A. S., Zon, G., and Strekowski, L. (1993) Biochemistry 32, 10614-10621.
39. Cassidy, S. A., Strekowski, L., Wilson, W. D., and Fox, K. R. (1994) Biochemistry 33, 15338-15347.
40. Chandler, S. P., Strekowski, L., Wilson, W. D., and Fox, K. R. (1995) Biochemistry 34, 7234-7242.
41. Satchwell, S. C., Drew, H. R., and Travers, A. A. (1986) J. Mol. Biol. 191, 659-675.
42. Wall, G., Varga-Weisz, P. D., Sandatzopoulos, R., and Becker, P. B. (1995) EMBO J. 14, 1727-1736.
43. Tsukiyama, T., Becker, P. B., and Wu, C. (1994) Nature 367, 525-532.
44. Drew, H. R., and Travers, A. A. (1984) Cell 37, 491-502.
45. Travers, A. A., Lamond, A. I., Mace, H. A. F., and Berman, M. L. (1983) Cell 35, 265-273.
46. Brown, P. M., Drabble, A., and Fox, K. R. (1996) Biochem. J. 314, 427-432.
47. Keppler, M. D., and Fox, K. R. (1997) Nucleic Acids Res. 25, 4464-4469.
48. Polach, K. J., and Widom. J. (1995) J. Mol. Biol. 254, 130-149.
49. Polach, K. J., and Widom, J. (1996) J. Mol. Biol. 258, 800-812.
50. Brown, P. M., and Fox, K. R. (1998) Biochem. J. 333, 259-267.
51. Felsenfeld, G. (1992) Nature 355, 219-224.
52. Wolffe, A. P. (1994) Curr. Opin. Genet. Dev. 4, 245-254.