Sequence analysis of Arabidopsis thaliana E/ANTH-domain-containing proteins: Membrane tethers of the clathrin-dependent vesicle budding machinery

Protoplasma

Volumn 226, Issue 1-2, 2005, Pages 13-21

  Holstein, Susanne E H ^a   Oliviusson, Peter ^a  

^a UNIVERSITY OF HEIDELBERG   (Germany)

Author keywords

ANTH domain; Clathrin mediated vesicle budding; Endocytosis; ENTH domain; Phospholipid; Protein interaction; VHS domain

Indexed keywords

ARABIDOPSIS PROTEIN;

ANIMAL; ARABIDOPSIS; ARTICLE; CELL MEMBRANE; COATED VESICLE; COMPARATIVE STUDY; ENDOCYTOSIS; GENETICS; MOLECULAR GENETICS; PHYLOGENY; PHYSIOLOGY; PROTEIN TERTIARY STRUCTURE; SEQUENCE ALIGNMENT;

ANIMALS; ARABIDOPSIS; ARABIDOPSIS PROTEINS; CELL MEMBRANE; CLATHRIN-COATED VESICLES; ENDOCYTOSIS; MOLECULAR SEQUENCE DATA; PHYLOGENY; PROTEIN STRUCTURE, TERTIARY; SEQUENCE ALIGNMENT;

ARABIDOPSIS; ARABIDOPSIS THALIANA;

EID: 26844456597     PISSN: 0033183X     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00709-005-0105-7     Document Type: Article

References (57)

1. RC Aguilar HA Watson B Wendland 2003 The yeast epsin Ent1 is recruited to membranes through multiple independent interactions. J Biol Chem 278 10737 10743
2. S Ahle E Ungewickell 1986 Purification and properties of a new clathrin assembly protein. EMBO J 5 3143 3149
3. SF Altschul W Gish W Miller EW Myers DJ Lipman 1990 Basic local alignment search tool. J Mol Biol 215 403 410
4. Arabidopsis Genome Initiative 2000 Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408 796 815
5. C Azevedo MJ Santos-Rosa K Shirasu 2001 The U-box protein family in plants. Trends Plant Sci 6 354 358
6. M Barth SEH Holstein 2004 Identification and functional characterization of Arabidopsis AP180, a binding partner of plant αC-adaptin. J Cell Sci 117 2051 2062
7. TJ Brett LM Traub DH Fremont 2002 Accessory protein recruitment motifs in clathrin-mediated endocytosis. Structure 10 797 809
8. FM Brodsky C-Y Chen C Knuehl MC Towler DE Wakeham 2001 Biological basket weaving: formation and function of clathrin-coated vesicles. Annu Rev Cell Dev Biol 17 517 568
9. H Chen S Fre V Slepnev MR Capua K Takei M Butler PP di Fiore P de Camilli 1998 Epsin is an EH-domain-binding protein implicated in clathrin-mediated endocytosis. Nature 394 793 797
10. S Chidambaram N Müllers K Wiederhold V Haucke G Fischer von Mollard 2004 Specific interaction between SNAREs and ENTH domains of epsin-related proteins in TGN to endosome transport. J Biol Chem 279 4175 4179
11. O Cremona P de Camilli 2001 Phosphoinositides in membrane traffic at the synapse. J Cell Sci 114 1041 1052
12. P De Camilli H Chen J Hyman E Panepucci A Bateman AT Brunger 2002 The ENTH domain. FEBS Lett 513 11 18
13. MT Drake MA Downs LM Traub 2000 Epsin binds to clathrin by associating directly with the clathrin-terminal domain. J Biol Chem 275 6479 6489
14. MC Duncan GS Payne 2003 ENTH/ANTH domains expand to the Golgi. Trends Cell Biol 13 211 215
15. AE Engqvist-Goldstein RA Warren MM Kessels JH Keen J Heuser DG Drubin 2001 The actin binding protein Hip1R associates with clathrin during early stages of endocytosis and promotes assembly in vitro. J Cell Biol 154 1209 1223
16. Felsenstein J (1993) PHYLIP (Phylogeny Inference Package) version 3.5c. Distributed by the author. Department of Genetics, University of Washington, Seattle, Washington
17. MGJ Ford BMF Pearse MK Higgins Y Vallis DJ Owen 2001 Simultaneous binding of PtdIns(4,5)P2 and clathrin by AP180 in the nucleation of clathrin lattices on membranes. Science 291 1051 1055
18. - Mills IG, Peter BJ, Vallis Y, Praefcke GJK, Evans PR, McMahon HT (2002) Curvature of clathrin-coated pits driven by epsin. Nature 419: 361-366
19. N Happel S Höning J-M Neuhaus N Paris DG Robinson SEH Holstein 2004 Arabidopsis μA-adaptin interacts in vitro with the tyrosine-motif of the vacuolar sorting receptor VSR-PS1. Plant J 37 678 693
20. J Hirst A Motley K Harasaki SY Peak Chew MS Robinson 2003 EpsinR: an ENTH domain-containing protein that interacts with AP-1. Mol Biol Cell 14 625 641
21. SEH Holstein 2002 Clathrin and plant endocytosis. Traffic 3 614 620
22. JH Hurley S Misra 2000 Signaling and subcellular targeting by membrane-binding domains. Annu Rev Biophys Biomol Struct 29 49 79
23. NK Hussain M Yamabhai AR Ramjaun AM Guy D Baranes JP O'Bryan CJ Der BK Kay PS McPherson 1999 Splice variants of intersection are components of the endocytic machinery in neurons and nonneuronal cells. J Biol Chem 274 15671 15677
24. - Yamabhai M, Bhakar AL, Metzler M, Ferguson SSG, Hayden MR, McPherson PS, Kay BK (2003) A role for Epsin N-terminal homology/AP180 N-terminal homology (ENTH/ANTH) domains in tubulin binding. J Biol Chem 278: 28823-28830
25. 2+ finger protein (PLZF). J Cell Biol 149 537 546
26. T Itoh S Koshiba T Kigawa A Kikuchi S Yokoyama T Takenawa 2001 Role of the ENTH domain in phosphatidylinositol-4,5-bisphosphate binding and endocytosis. Science 291 1047 1051
27. HD Jones MJ Holdsworth R Hooley 1997 A full-length cDNA, Af10 (accession number U80041), isolated from wild oat (Avena fatua) aleurone encodes a protein with similarity to clathrin assembly proteins. PGR97-018. Plant Physiol 113 663
28. C Kalthoff J Alves C Urbanke R Knorr EJ Ungewickell 2001 Unusual structure organization of the endocytic proteins AP180 and epsin1. J Biol Chem 277 8209 8216
29. - Groos S, Kohl R, Mahrhold S, Ungewickell EJ (2002) Clint: a novel clathrin-binding ENTH-domain protein at the Golgi. Mol Biol Cell 13: 4060-4073
30. BK Kay M Yamabhai B Wendland SD Emr 1999 Identification of a novel domain shared by putative components of the endocytic and cytoskeletal machinery. Protein Sci 8 435 438
31. T Kirchhausen 2000 Three ways to make a vesicle. Nat Rev Mol Cell Biol 1 187 198
32. BC-H Lam E Blumwald 2002 Domains as functional building blocks of plant proteins. Trends Plant Sci 7 544 549
33. - Sage TL, Bianchi F, Blumwald E (2001) Role of SH3-domain-containing proteins in clathrin-mediated vesicle trafficking in Arabidopsis. Plant Cell 13: 2499-2512
34. V Legendre-Guillemin S Wasiak N Hussain A Angers PS McPherson 2004 ENTH/ANTH proteins and clathrin-mediated membrane budding. J Cell Sci 117 9 18
35. K Lindsey S Casson P Chilley 2002 Peptides: new signalling molecules in plants. Trends Plant Sci 7 78 83
36. O Lohi A Poussu Y Mao F Quiocho VP Lehto 2002 VHS domain - a longshoreman of vesicles. FEBS Lett 513 19 23
37. Y Mao J Cen JA Maynard B Zhang FA Quiocho 2001 A novel all helix fold of the AP180 amino-terminal domain for phosphoinositide binding and clathrin assembly in synaptic vesicle endocytosis. Cell 104 433 440
38. LJ McGuffin K Bryson DT Jones 2000 The PSIPRED protein structure prediction server. Bioinformatics 16 404 405
39. PS McPherson 2002 The endocytic machinery at an interface with the actin cytoskeleton: a dynamic, hip intersection. Trends Cell Biol 12 312 315
40. M Metzler B Li L Gan J Georgiu CA Gutekunst Y Wang E Torre RS Devon R Oh V Legendre-Guillemin 2003 Disruption of the endocytic protein HIP1 results in neuronal deficits and decreased AMPA receptor trafficking. EMBO J 22 3254 3266
41. SK Mishra NR Agostinelli TJ Brett I Mizukami TS Ross LM Traub 2001 Clathrin and AP-2 binding sites in HIP1 uncover a general assembly role for endocytic accessory proteins. J Biol Chem 276 46230 46236
42. JR Morgan K Prasad W Hao GJ Augustine EM Lafer 2000 A conserved clathrin assembly motif essential for synaptic vesicle endocytosis. J Neurosci 20 8667 8676
43. SA Morris S Schröder U Plessmann K Weber E Ungewickell 1993 Clathrin assembly protein AP180: primary structure, domain organization and identification of a clathrin binding site. EMBO J 12 667 675
44. ML Nonet AM Holgado F Brewer CJ Serpe BA Norbeck J Holleran L Wei E Hartwieg EM Jorgensen A Alfonso 1999 UNC-11, a Caenorhabditis elegans AP180 homologue, regulates the size and protein composition of synaptic vesicles. Mol Biol Cell 10 2343 2360
45. E Overstreet X Chen B Wendland JA Fischer 2003 Either part of a Drosophila epsin protein, divided after ENTH domain, functions in endocytosis of Delta in the developing eye. Curr Biol 13 854 860
46. DJ Owen Y Vallis BMF Pearse HT McMahon PR Evans 2000 The structure and function of the β2-adaptin appendage domain. EMBO J 19 4216 4227
47. JA Rosenthal H Chen VI Slepnev L Pellegrini AE Salcini PP Di Fiore P De Camilli 1999 The epsins define a family of proteins that interact with components of the clathrin coat and contain a new protein module. J Biol Chem 274 33959 33965
48. U Scheele J Alves R Frank M Düwel C Kalthoff E Ungewickell 2003 Molecular and functional characterization of clathrin- and AP-2-binding determinants within a disordered domain of auxilin. J Biol Chem 278 25357 25368
49. J Schultz F Milpetz P Bork CP Ponting 1998 SMART, a simple modular architecture research tool: identification of signaling domains. Proc Natl Acad Sci USA 95 5857 5864
50. SC Shih DJ Katzmann JD Schnell M Sutano SD Emr L Hicke 2002 Epsins and Vps27p/Hrs contain ubiquitin-binding domains that function in receptor endocytosis. Nat Cell Biol 4 389 393
51. VI Slepnev P de Camilli 2000 Accessory factors in clathrin-dependent synaptic vesicle endocytosis. Nat Rev Neurosci 1 161 172
52. K Takei V Haucke 2001 Clathrin-mediated endocytosis: membrane factors pull the trigger. Trends Cell Biol 11 385 391
53. F Tebar SK Bohlander A Sorkin 1999 Clathrin assembly lymphoid myeloid leukemia (CALM) protein: localization in endocytic-coated pits, interactions with clathrin, and the impact of overexpression on clathrin-mediated traffic. Mol Biol Cell 10 2687 2702
54. LM Traub 2003 Sorting it out: AP-2 and alternate clathrin adaptors in endocytic cargo selection. J Cell Biol 163 203 208
55. S Wasiak V Legendre-Guillemin R Puertollano F Blondeau M Girard E de Heuvel D Boismenu AW Bell JS Bonifacino PS McPherson 2002 Enthoprotin: a novel clathrin-associated protein identified through subcellular proteomics. J Cell Biol 158 855 862
56. B Wendland 2002 Epsins: adaptors in endocytosis? Nat Rev Mol Cell Biol 3 971 977
57. M Yamabhai NG Hoffmann NL Hardison PS McPherson L Castagnoli G Cesarini BK Kay 1998 Intersectin, a novel adaptor protein with two Eps15 homology and five Src homology 3 domains. J Biol Chem 273 31401 31407