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Volumn 337, Issue 2, 2005, Pages 692-700

Determination of mutation trend in proteins by means of translation probability between RNA codes and mutated amino acids

Author keywords

Amino acid; Mutation; RNA; Translation probability

Indexed keywords

AMINO ACID; RNA;

EID: 26444529845     PISSN: 0006291X     EISSN: 10902104     Source Type: Journal    
DOI: 10.1016/j.bbrc.2005.09.106     Document Type: Article
Times cited : (20)

References (32)
  • 1
    • 0037827862 scopus 로고    scopus 로고
    • second ed. BIOS Scientific Publishers Oxford
    • T.A. Brown Genome second ed. 2002 BIOS Scientific Publishers Oxford
    • (2002) Genome
    • Brown, T.A.1
  • 2
    • 10644277147 scopus 로고    scopus 로고
    • Post-transfer editing in vitro and in vivo by the beta subunit of phenylalanyl-tRNA synthetase
    • H. Roy, J. Ling, M. Irnov, and M. Ibba Post-transfer editing in vitro and in vivo by the beta subunit of phenylalanyl-tRNA synthetase EMBO J. 23 2004 4639 4648
    • (2004) EMBO J. , vol.23 , pp. 4639-4648
    • Roy, H.1    Ling, J.2    Irnov, M.3    Ibba, M.4
  • 3
    • 0028701609 scopus 로고
    • Energy cost of translational proofreading in vivo. the aminoacylation of transfer RNA in Escherichia coli
    • H. Jakubowski Energy cost of translational proofreading in vivo. The aminoacylation of transfer RNA in Escherichia coli Ann. N.Y. Acad. Sci. 745 1994 4 20
    • (1994) Ann. N.Y. Acad. Sci. , vol.745 , pp. 4-20
    • Jakubowski, H.1
  • 4
    • 0023036918 scopus 로고
    • Actions of the anticodon arm in translation on the phenotypes of RNA mutants
    • M. Yarus, S.W. Cline, P. Wier, L. Breeden, and R.C. Thompson Actions of the anticodon arm in translation on the phenotypes of RNA mutants J. Mol. Biol. 192 1986 235 255
    • (1986) J. Mol. Biol. , vol.192 , pp. 235-255
    • Yarus, M.1    Cline, S.W.2    Wier, P.3    Breeden, L.4    Thompson, R.C.5
  • 5
    • 0025799516 scopus 로고
    • A single base substitution in 16S ribosomal RNA suppresses streptomycin dependence and increases the frequency of translational errors
    • P.N. Allen, and H.F. Noller A single base substitution in 16S ribosomal RNA suppresses streptomycin dependence and increases the frequency of translational errors Cell 66 1991 141 148
    • (1991) Cell , vol.66 , pp. 141-148
    • Allen, P.N.1    Noller, H.F.2
  • 6
    • 0031882440 scopus 로고    scopus 로고
    • Translational fidelity: Error-prone versus hyper-accurate ribosomes
    • U. von Ahsen Translational fidelity: error-prone versus hyper-accurate ribosomes Chem. Biol. 5 1998 R3 R6
    • (1998) Chem. Biol. , vol.5
    • Von Ahsen, U.1
  • 8
    • 0031738130 scopus 로고    scopus 로고
    • Translational selection and molecular evolution
    • H. Akashi, and A. Eyre-Walker Translational selection and molecular evolution Curr. Opin. Genet. Dev. 8 1998 688 693
    • (1998) Curr. Opin. Genet. Dev. , vol.8 , pp. 688-693
    • Akashi, H.1    Eyre-Walker, A.2
  • 9
    • 0028360882 scopus 로고
    • Mistranslation of human phosphoglycerate kinase in yeast in the presence of paromomycin
    • C.M. Grant, and M.F. Tuite Mistranslation of human phosphoglycerate kinase in yeast in the presence of paromomycin Curr. Genet. 26 1994 95 99
    • (1994) Curr. Genet. , vol.26 , pp. 95-99
    • Grant, C.M.1    Tuite, M.F.2
  • 11
    • 2442707531 scopus 로고    scopus 로고
    • Determination of amino acid pairs sensitive to variants in human copper-transporting ATPase 2
    • G. Wu, and S. Yan Determination of amino acid pairs sensitive to variants in human copper-transporting ATPase 2 Biochem. Biophys. Res. Commun. 319 2004 27 31
    • (2004) Biochem. Biophys. Res. Commun. , vol.319 , pp. 27-31
    • Wu, G.1    Yan, S.2
  • 12
    • 0842276870 scopus 로고    scopus 로고
    • Determination of amino acid pairs sensitive to variants in human Bruton's tyrosine kinase by means of a random approach
    • G. Wu, and S. Yan Determination of amino acid pairs sensitive to variants in human Bruton's tyrosine kinase by means of a random approach Mol. Simul. 29 2003 249 254
    • (2003) Mol. Simul. , vol.29 , pp. 249-254
    • Wu, G.1    Yan, S.2
  • 13
    • 0038805166 scopus 로고    scopus 로고
    • Determination of amino acid pairs in human hemoglobulin α-chain sensitive to variants by means of a random approach
    • G. Wu, and S.M. Yan Determination of amino acid pairs in human hemoglobulin α-chain sensitive to variants by means of a random approach Comp. Clin. Pathol. 12 2003 21 25
    • (2003) Comp. Clin. Pathol. , vol.12 , pp. 21-25
    • Wu, G.1    Yan, S.M.2
  • 14
    • 0036905929 scopus 로고    scopus 로고
    • Determination of amino acid pairs sensitive to variants in human low-density lipoprotein receptor precursor by means of a random approach
    • G. Wu, and S. Yan Determination of amino acid pairs sensitive to variants in human low-density lipoprotein receptor precursor by means of a random approach J. Biochem. Mol. Biol. Biophys. 6 2002 401 406
    • (2002) J. Biochem. Mol. Biol. Biophys. , vol.6 , pp. 401-406
    • Wu, G.1    Yan, S.2
  • 15
    • 0347300717 scopus 로고    scopus 로고
    • Determination of amino acid pairs in human p53 protein sensitive to mutations/variants by means of a random approach
    • G. Wu, and S. Yan Determination of amino acid pairs in human p53 protein sensitive to mutations/variants by means of a random approach J. Mol. Model. 9 2003 337 341
    • (2003) J. Mol. Model. , vol.9 , pp. 337-341
    • Wu, G.1    Yan, S.2
  • 16
    • 0036957716 scopus 로고    scopus 로고
    • Estimation of amino acid pairs sensitive to variants in human phenylalanine hydroxylase protein by means of a random approach
    • G. Wu, and S.M. Yan Estimation of amino acid pairs sensitive to variants in human phenylalanine hydroxylase protein by means of a random approach Peptides 23 2002 2085 2090
    • (2002) Peptides , vol.23 , pp. 2085-2090
    • Wu, G.1    Yan, S.M.2
  • 17
    • 2342608968 scopus 로고    scopus 로고
    • Determination of amino acid pairs in Von Hippel-Lindau disease tumour suppressor (G7 protein) sensitive to variants by means of a random approach
    • G. Wu, and S. Yan Determination of amino acid pairs in Von Hippel-Lindau disease tumour suppressor (G7 protein) sensitive to variants by means of a random approach J. Appl. Res. 3 2003 512 520
    • (2003) J. Appl. Res. , vol.3 , pp. 512-520
    • Wu, G.1    Yan, S.2
  • 18
    • 0842287567 scopus 로고    scopus 로고
    • Prediction of amino acid pairs sensitive to mutations in the spike protein from SARS related coronavirus
    • G. Wu, and S. Yan Prediction of amino acid pairs sensitive to mutations in the spike protein from SARS related coronavirus Peptides 24 2003 1837 1845
    • (2003) Peptides , vol.24 , pp. 1837-1845
    • Wu, G.1    Yan, S.2
  • 19
    • 0033957834 scopus 로고    scopus 로고
    • The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 2000
    • A. Bairoch, and R. Apweiler The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 2000 Nucleic Acids Res. 28 2000 45 48
    • (2000) Nucleic Acids Res. , vol.28 , pp. 45-48
    • Bairoch, A.1    Apweiler, R.2
  • 20
    • 24944576058 scopus 로고    scopus 로고
    • The impact of including tRNA content on the optimality of the genetic code
    • H. Goodarzi, H.S. Najafabadi, H.A. Nejad, and N. Torabi The impact of including tRNA content on the optimality of the genetic code Bull. Math. Biol. 2005 [Available on line July 11]
    • (2005) Bull. Math. Biol.
    • Goodarzi, H.1    Najafabadi, H.S.2    Nejad, H.A.3    Torabi, N.4
  • 21
    • 0025912550 scopus 로고
    • Amino acid misincorporation during high-level expression of mouse epidermal growth factor in Escherichia coli
    • C.A. Scorer, M.J. Carrier, and R.F. Rosenberger Amino acid misincorporation during high-level expression of mouse epidermal growth factor in Escherichia coli Nucleic Acids Res. 19 1991 3511 3516
    • (1991) Nucleic Acids Res. , vol.19 , pp. 3511-3516
    • Scorer, C.A.1    Carrier, M.J.2    Rosenberger, R.F.3
  • 22
    • 13444252268 scopus 로고    scopus 로고
    • Inhibited cell growth and protein functional changes from an editing-defective tRNA synthetase
    • J.M. Bacher, V. de Crecy-Lagard, and P.R. Schimmel Inhibited cell growth and protein functional changes from an editing-defective tRNA synthetase Proc. Natl. Acad. Sci. USA 102 2005 1697 1701
    • (2005) Proc. Natl. Acad. Sci. USA , vol.102 , pp. 1697-1701
    • Bacher, J.M.1    De Crecy-Lagard, V.2    Schimmel, P.R.3
  • 23
    • 0034811431 scopus 로고    scopus 로고
    • Selection at the amino acid level can influence synonymous codon usage: Implications for the study of codon adaptation in plastid genes
    • B.R. Morton Selection at the amino acid level can influence synonymous codon usage: implications for the study of codon adaptation in plastid genes Genetics 159 2001 347 358
    • (2001) Genetics , vol.159 , pp. 347-358
    • Morton, B.R.1
  • 24
  • 25
    • 14744303845 scopus 로고    scopus 로고
    • Newly sequenced eRF1s from ciliates: The diversity of stop codon usage and the molecular surfaces that are important for stop codon interactions
    • O.T. Kim, K. Yura, N. Go, and T. Harumoto Newly sequenced eRF1s from ciliates: the diversity of stop codon usage and the molecular surfaces that are important for stop codon interactions Gene 346 2005 277 286
    • (2005) Gene , vol.346 , pp. 277-286
    • Kim, O.T.1    Yura, K.2    Go, N.3    Harumoto, T.4
  • 26
    • 0034089745 scopus 로고    scopus 로고
    • Translation conditional models for protein coding sequences
    • F. Rodolphe, and C. Mathe Translation conditional models for protein coding sequences J. Comput. Biol. 7 2000 249 260
    • (2000) J. Comput. Biol. , vol.7 , pp. 249-260
    • Rodolphe, F.1    Mathe, C.2
  • 27
    • 0035155844 scopus 로고    scopus 로고
    • Substitution rates in Drosophila nuclear genes: Implications for translational selection
    • K.A. Dunn, J.P. Bielawski, and Z. Yang Substitution rates in Drosophila nuclear genes: implications for translational selection Genetics 157 2001 295 305
    • (2001) Genetics , vol.157 , pp. 295-305
    • Dunn, K.A.1    Bielawski, J.P.2    Yang, Z.3
  • 28
    • 4344670690 scopus 로고    scopus 로고
    • Selection on codon usage for error minimization at the protein level
    • M. Archetti Selection on codon usage for error minimization at the protein level J. Mol. Evol. 59 2004 400 415
    • (2004) J. Mol. Evol. , vol.59 , pp. 400-415
    • Archetti, M.1
  • 29
    • 0028040734 scopus 로고
    • The effects of mutation and natural selection on codon bias in the genes of Drosophila
    • R.M. Kliman, and J. Hey The effects of mutation and natural selection on codon bias in the genes of Drosophila Genetics 137 1994 1049 1056
    • (1994) Genetics , vol.137 , pp. 1049-1056
    • Kliman, R.M.1    Hey, J.2
  • 30
    • 0031658304 scopus 로고    scopus 로고
    • The correlation between synonymous and nonsynonymous substitutions in Drosophila: Mutation, selection or relaxed constraints?
    • J.M. Comeron, and M. Kreitman The correlation between synonymous and nonsynonymous substitutions in Drosophila: mutation, selection or relaxed constraints? Genetics 150 1998 767 775
    • (1998) Genetics , vol.150 , pp. 767-775
    • Comeron, J.M.1    Kreitman, M.2
  • 31
    • 14644437032 scopus 로고    scopus 로고
    • Mitochondrial genetic codes evolve to match amino acid requirements of proteins
    • J. Swire, O.P. Judson, and A. Burt Mitochondrial genetic codes evolve to match amino acid requirements of proteins J. Mol. Evol. 60 2005 128 139
    • (2005) J. Mol. Evol. , vol.60 , pp. 128-139
    • Swire, J.1    Judson, O.P.2    Burt, A.3
  • 32
    • 0036756031 scopus 로고    scopus 로고
    • Randomness in the primary structure of protein: Methods and implications
    • G. Wu, and S.M. Yan Randomness in the primary structure of protein: methods and implications Mol. Biol. Today 3 2002 55 69
    • (2002) Mol. Biol. Today , vol.3 , pp. 55-69
    • Wu, G.1    Yan, S.M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.