Ferribacterium limneticum, gen. nov., sp. nov., an Fe(III)-reducing microorganism isolated from mining-impacted freshwater lake sediments

Archives of Microbiology

Volumn 171, Issue 3, 1999, Pages 183-188

  Cummings, David E ^a   Caccavo Jr , Frank ^b   Spring, Stefan ^c   Rosenzweig, R Frank ^a  

^a UNIVERSITY OF IDAHO   (United States)

^b UNIVERSITY OF NEW HAMPSHIRE   (United States)

^c TECHNICAL UNIVERSITY OF MUNICH   (Germany)

Author keywords

Dissimilatory iron reduction; Ferribacterium limneticum; Idaho; Lake Coeur d'Alene; Mine wastes

Indexed keywords

IRON;

ANAEROBIC BACTERIUM; ANAEROBIC METABOLISM; ARTICLE; BACTERIAL GENE; BACTERIAL GENETICS; BACTERIAL GROWTH; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATION; FERRIBACTERIUM LIMNETICUM; GENE SEQUENCE; NONHUMAN; PHYLOGENY; PRIORITY JOURNAL; SEQUENCE ANALYSIS;

FERRIBACTERIUM LIMNETICUM; RHODOCYCLUS TENUIS;

EID: 0033001801     PISSN: 03028933     EISSN: None     Source Type: Journal    
DOI: 10.1007/s002030050697     Document Type: Article

References (32)

1. Balch WE, Wolfe RS (1976) New approach to the cultivation of methanogenic bacteria: 2-mercaptoethanesulfonic acid (HS-CoM)-dependent growth of Methanobacterium ruminatium in a pressurized atmosphere. Appl Environ Microbiol 32:781-791
2. Beckwith MA, Woods PF, Berenbrock C (1997) Trace-element concentrations and transport in the Coeur d'Alene River, Idaho, water years 1993-94. USGS open-file report 97-398
3. Bozzola JJ, Russell LD (1992) Electron microscopy: principles for biologists. Jones, Boston
4. Bryant MP (1972) Commentary on Hungate technique for culture of anaerobic microorganisms. Am J Clin Nutr 25:1324-1327
5. Brock TD, Gustafson J (1976) Ferric iron reduction by sulfur- and iron-oxidizing bacteria. Appl Environ Microbiol 32:567-571
6. Caccavo F Jr, Blakemore RP, Lovley DR (1992) A hydrogen-oxidizing, Fe(III)-reducing microorganism from the Great Bay estuary, New Hampshire. Appl Environ Microbiol 58:3211-3216
7. Caccavo F Jr, Lonergan DJ, Lovley DR, Davis M, Stolz JF, McInerney MJ (1994) Geobacter sulferreducens sp. nov., a hydrogen- and acetate-oxidizing dissimilatory metal-reducing microorganism. Appl Environ Microbiol 60:3752-3759
8. Caccavo F Jr, Coates JD, Rosello-Mora RA, Ludwig W, Schleifer KH, Lovley DR, McInerney MJ (1996) Geovibrio ferrireducens, a phylogenetically distinct dissimilatory Fe(III)-reducing bacterium. Arch Microbiol 165:370-376
9. Cummings DE, Caccavo F Jr, Fendorf SE, Rosenzweig RF (1999) Arsenic mobilization by the dissimilatory Fe(III)-reducing bac teria Shewanella alga BrY. Environ Sci Technol 33 (in press)
10. Dobbin PS, Warren LH, Cook NJ, McEwan AG, Powell AK, Richardson DJ (1996) Dissimilatory iron(III) reduction by Rhodobacter capsulatus. Microbiology 142:765-774
11. Ellis MM (1940) Pollution of the Coeur d'Alene River and adja cent waters by mine wastes. Special scientific report no. 1, US Bureau of Fisheries, Washington, DC
12. Felsenstein J (1982) Numerical methods for inferring phylogenetic trees. Q Rev Biol 57:379-404
13. Fredrickson JK, Gorby YA (1996) Environmental processes mediated by iron-reducing bacteria. Curr Opin Biotechnol 7:287- 294
14. Harrington JM, LaForce MJ, Rember WC, Fendorf SE, Rosenzweig RF (1998) Phase associations and mobilization of iron and trace elements in Coeur d'Alene Lake, Idaho. Environ Sci Technol 32:650-656
15. Hobbie JE, Daley RJ, Jasper S (1977) Use of nucleopore filters for counting bacteria by fluorescence microscopy. Appl Environ Microbiol 33:1225-1228
16. Horowitz AJ, Elrick KA, Robbins JA, Cook RB (1995) A summary of the effects of mining and related activities on the sediment-trace element geochemistry of Lake Coeur d'Alene, Idaho, U.S.A. J Geochem Expl 52:135-144
17. Kostka JE, Stucki JW, Nealson KH, Wu J (1996) Reduction of structural Fe(III) in smectite by a pure culture of Shewanella putrefaciens strain MR-1. Clays Clay Miner 44:522-529
18. Lonergan DJ, Jenter HL, Coates JD, Phillips EJP, Schmidt TM, Lovley DR (1996) Phylogenetic analysis of dissimilatory Fe(III)-reducing bacteria. J Bacteriol 178:2402-2408
19. Lovley DR (1991) Dissimilatory Fe(III) and Mn(IV) reduction. Microbiol Rev 55:259-287
20. Lovley DR, Phillips EJP (1986) Organic matter mineralization with reduction of ferric iron in anaerobic sediments. Appl Environ Microbiol 51:683-689
21. Lovley DR, Phillips EJP (1988) Novel mode of microbial energy metabolism: organic carbon oxidation coupled to dissimilatory reduction of iron or manganese. Appl Environ Microbiol 54:1472-1480
22. Lovley DR, Chapelle FH, Phillips EJP (1990) Fe(III)-reducing bacteria in deeply buried sediments of the Atlantic Coastal Plain. Geology 18:954-957
23. Lovley DR, Coates JD, Saffarini DA, Lonergan DJ (1997) Dissimilatory iron reduction. In: Winkelman G, Carrano CJ (eds) Iron and related transition metals in microbial metabolism. Harwood, Yverdon, pp 187-215
24. Ludwig W, Strunk O (1997) ARB - a software environment for sequence data. Internet address: http://www.biol.chemie.tu- muenchen.de/pub/ARB/documentation
25. Maidak BL, Olsen GJ, Larsen N, Overbeck R, McCaughey MJ, Woese CR (1996) The ribosomal database project. Nucleic Acids Res 24:82-85
26. Mudroch A, MacKnight S (1994) Handbook of techniques for aquatic sediments sampling, 2nd edn. Lewis, Boca Raton
27. Murray RGE, Doetsch RN, Robinow CF (1994) Determinative and cytological light microscopy. In: Gerhardt P, Murray RGE, Wood WA, Krieg NR (eds) Methods for general and molecular bacteriology. American Society for Microbiology, Washington, DC, p 36
28. Pfennig N (1969) Rhodospirillum tenuis sp. n., a new species of the purple nonsulfur bacteria. J Bacteriol 99:619-620
29. Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425
30. Semple KM, Westlake DWS (1987) Characterization of iron-reducing Alteromonas putrefaciens strains from oil field fluids. Can J Microbiol 33:366-371
31. Slobodkin A, Reysenbach AL, Strutz N, Dreier M, Wiegel J (1997) Thermoterrabacterium ferrireducens gen. nov., sp. nov., a thermophilicanaerobic dissimilatory Fe(III)-reducing bacterium from a continental hot spring. Int J Syst Bacteriol 47:541-547
32. Wallner G, Fuchs B, Spring S, Beisker W, Amann R (1997) Flow sorting of microorganisms for molecular analysis. Appl Environ Microbiol 63:4223-4231