-
1
-
-
0037167899
-
Within the fold: Assessing differential expression measures and reproducibility in microarray assays
-
RESEARCH0062.1-RESEARCH0062.12
-
Yang IV, Chen E, Hasseman JP, Liang W, Frank BC, Wang S, Sharov V, Saeed AI, White J, Li J, Lee NH, Yeatman TJ, Quackenbush J: Within the fold: assessing differential expression measures and reproducibility in microarray assays. Genome Biol 2002, 3:RESEARCH0062.1-RESEARCH0062.12.
-
(2002)
Genome Biol.
, vol.3
-
-
Yang, I.V.1
Chen, E.2
Hasseman, J.P.3
Liang, W.4
Frank, B.C.5
Wang, S.6
Sharov, V.7
Saeed, A.I.8
White, J.9
Li, J.10
Lee, N.H.11
Yeatman, T.J.12
Quackenbush, J.13
-
2
-
-
0029748326
-
Parallel human genome analysis: Microarray-based expression monitoring of 1000 genes
-
Schena M, Shalon D, Heller R, Chai A, Brown PO, Davis RW: Parallel human genome analysis: microarray-based expression monitoring of 1000 genes. Proc Natl Acad Sci U S A 1996, 93:10614-10619.
-
(1996)
Proc. Natl. Acad. Sci. U. S. A.
, vol.93
, pp. 10614-10619
-
-
Schena, M.1
Shalon, D.2
Heller, R.3
Chai, A.4
Brown, P.O.5
Davis, R.W.6
-
3
-
-
0028806048
-
Quantitative monitoring of gene expression patterns with a complementary DNA microarray
-
Schena M, Shalon D, Davis RW, Brown PO: Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science 1995, 270:467-470.
-
(1995)
Science
, vol.270
, pp. 467-470
-
-
Schena, M.1
Shalon, D.2
Davis, R.W.3
Brown, P.O.4
-
4
-
-
0035221240
-
Protein microarrays for highly parallel detection and quantitation of specific proteins and antibodies in complex solutions
-
RESEARCH0004.1-RESEARCH0004.13
-
Haab BB, Dunham MJ, Brown PO: Protein microarrays for highly parallel detection and quantitation of specific proteins and antibodies in complex solutions. Genome Biol 2001, 2:RESEARCH0004.1-RESEARCH0004.13.
-
(2001)
Genome Biol.
, vol.2
-
-
Haab, B.B.1
Dunham, M.J.2
Brown, P.O.3
-
5
-
-
0035945567
-
Genomic binding sites of the yeast cell-cycle transcription factors SBF and MBF
-
Iyer VR, Horak CE, Scafe CS, Botstein D, Snyder M, Brown PO: Genomic binding sites of the yeast cell-cycle transcription factors SBF and MBF. Nature 2001, 409:533-538.
-
(2001)
Nature
, vol.409
, pp. 533-538
-
-
Iyer, V.R.1
Horak, C.E.2
Scafe, C.S.3
Botstein, D.4
Snyder, M.5
Brown, P.O.6
-
6
-
-
0032823523
-
Genome-wide analysis of DNA copy-number changes using cDNA microarrays
-
Pollack JR, Perou CM, Alizadeh AA, Eisen MB, Pergamenschikov A, Williams CF, Jeffrey SS, Botstein D, Brown PO: Genome-wide analysis of DNA copy-number changes using cDNA microarrays. Nat Genet 1999, 23:41-46.
-
(1999)
Nat. Genet.
, vol.23
, pp. 41-46
-
-
Pollack, J.R.1
Perou, C.M.2
Alizadeh, A.A.3
Eisen, M.B.4
Pergamenschikov, A.5
Williams, C.F.6
Jeffrey, S.S.7
Botstein, D.8
Brown, P.O.9
-
7
-
-
0141534348
-
DNA-templated self-assembly of protein arrays and highly conductive nanowires
-
Yan H, Park SH, Finkelstein G, Reif JH, LaBean TH: DNA-templated self-assembly of protein arrays and highly conductive nanowires. Science 2003, 301:1882-1884.
-
(2003)
Science
, vol.301
, pp. 1882-1884
-
-
Yan, H.1
Park, S.H.2
Finkelstein, G.3
Reif, J.H.4
LaBean, T.H.5
-
8
-
-
10744230287
-
RNAi Microarray Analysis in Cultured Mammalian Cells
-
Mousses S, Caplen NJ, Cornelison R, Weaver D, Basik M, Hautaniemi S, Elkahloun AG, Lotufo RA, Choudary A, Dougherty ER, Suh E, Kallioniemi O: RNAi Microarray Analysis in Cultured Mammalian Cells. Genome Res 2003, 13:2341-2347.
-
(2003)
Genome Res.
, vol.13
, pp. 2341-2347
-
-
Mousses, S.1
Caplen, N.J.2
Cornelison, R.3
Weaver, D.4
Basik, M.5
Hautaniemi, S.6
Elkahloun, A.G.7
Lotufo, R.A.8
Choudary, A.9
Dougherty, E.R.10
Suh, E.11
Kallioniemi, O.12
-
9
-
-
0038268051
-
Use of a three-color cDNA microarray platform to measure and control support-bound probe for improved data quality and reproducibility
-
Hessner MJ, Wang X, Khan S, Meyer L, Schlicht M, Tackes J, Datta MW, Jacob HJ, Ghosh S: Use of a three-color cDNA microarray platform to measure and control support-bound probe for improved data quality and reproducibility. Nucleic Acids Res 2003, 31:e60-e60.
-
(2003)
Nucleic Acids Res.
, vol.31
-
-
Hessner, M.J.1
Wang, X.2
Khan, S.3
Meyer, L.4
Schlicht, M.5
Tackes, J.6
Datta, M.W.7
Jacob, H.J.8
Ghosh, S.9
-
10
-
-
0037009226
-
Evaluation of cadmium-induced transcriptome alterations by three color cDNA labeling microarray analysis on a T-cell line
-
Tsangaris GT, Botsonis A, Politis I, Tzortzatou-Stathopoulou F: Evaluation of cadmium-induced transcriptome alterations by three color cDNA labeling microarray analysis on a T-cell line. Toxicology 2002, 178:135-160.
-
(2002)
Toxicology
, vol.178
, pp. 135-160
-
-
Tsangaris, G.T.1
Botsonis, A.2
Politis, I.3
Tzortzatou-Stathopoulou, F.4
-
11
-
-
84874667487
-
-
MGED - Microarray Gene Expression Data Society Home Page
-
MGED - Microarray Gene Expression Data Society Home Page [http://www.mged.org]
-
-
-
-
12
-
-
18344396568
-
Minimum information about a microarray experiment (MIAME)-toward standards for microarray data
-
Brazma A, Hingamp P, Quackenbush J, Sherlock G, Spellman P, Stoeckert C, Aach J, Ansorge W, Ball CA, Causton HC, Gaasterland T, Glenisson P, Holstege FC, Kim IF, Markowitz V, Matese JC, Parkinson H, Robinson A, Sarkans U, Schulze-Kremer S, Stewart J, Taylor R, Vilo J, Vingron M: Minimum information about a microarray experiment (MIAME)-toward standards for microarray data. Nat Genet 2001, 29:365-371.
-
(2001)
Nat. Genet.
, vol.29
, pp. 365-371
-
-
Brazma, A.1
Hingamp, P.2
Quackenbush, J.3
Sherlock, G.4
Spellman, P.5
Stoeckert, C.6
Aach, J.7
Ansorge, W.8
Ball, C.A.9
Causton, H.C.10
Gaasterland, T.11
Glenisson, P.12
Holstege, F.C.13
Kim, I.F.14
Markowitz, V.15
Matese, J.C.16
Parkinson, H.17
Robinson, A.18
Sarkans, U.19
Schulze-Kremer, S.20
Stewart, J.21
Taylor, R.22
Vilo, J.23
Vingron, M.24
more..
-
13
-
-
0036901097
-
Microarray databases: Standards and ontologies
-
Stoeckert CJ Jr, Causton HC, Ball CA: Microarray databases: standards and ontologies. Nat Genet 2002, 32(Suppl):469-473.
-
(2002)
Nat. Genet.
, vol.32
, Issue.SUPPL.
, pp. 469-473
-
-
Stoeckert Jr., C.J.1
Causton, H.C.2
Ball, C.A.3
-
14
-
-
0037163144
-
Design and implementation of microarray gene expression markup language (MAGE-ML)
-
RESEARCH0046.1-RESEARCH0046.9
-
Spellman PT, Miller M, Stewart J, Troup C, Sarkans U, Chervitz S, Bernhart D, Sherlock G, Ball C, Lepage M, Swiatek M, Marks WL, Goncalves J, Markel S, Iordan D, Shojatalab M, Pizarro A, White J, Hubley R, Deutsch E, Senger M, Aronow BJ, Robinson A, Bassett D, Stoeckert CJ Jr, Brazma A: Design and implementation of microarray gene expression markup language (MAGE-ML). Genome Biol 2002, 3:RESEARCH0046.1-RESEARCH0046.9.
-
(2002)
Genome Biol.
, vol.3
-
-
Spellman, P.T.1
Miller, M.2
Stewart, J.3
Troup, C.4
Sarkans, U.5
Chervitz, S.6
Bernhart, D.7
Sherlock, G.8
Ball, C.9
Lepage, M.10
Swiatek, M.11
Marks, W.L.12
Goncalves, J.13
Markel, S.14
Iordan, D.15
Shojatalab, M.16
Pizarro, A.17
White, J.18
Hubley, R.19
Deutsch, E.20
Senger, M.21
Aronow, B.J.22
Robinson, A.23
Bassett, D.24
Stoeckert Jr., C.J.25
Brazma, A.26
more..
-
15
-
-
0034887203
-
Creating the gene ontology resource: Design and implementation
-
Gene C Ontology
-
Gene C Ontology: Creating the gene ontology resource: design and implementation. Genome Res 2001, 11:1425-1433.
-
(2001)
Genome Res.
, vol.11
, pp. 1425-1433
-
-
-
16
-
-
8844252982
-
THEA: Ontology-driven analysis of microarray data
-
Pasquier C, Girardot F, Jevardat dFK, Christen R: THEA: ontology-driven analysis of microarray data. Bioinformatics 2004, 20:2636-2643.
-
(2004)
Bioinformatics
, vol.20
, pp. 2636-2643
-
-
Pasquier, C.1
Girardot, F.2
Jevardat, D.F.K.3
Christen, R.4
-
17
-
-
23144431919
-
PathwayExplorer: Web service for visualizing highthroughput expression data on biological pathways
-
in press
-
Mlecnik B, Scheideler M, Hackl H, Hartler J, Sanchez-Cabo F, Trajanoski Z: PathwayExplorer: web service for visualizing highthroughput expression data on biological pathways. Nucleic Acids Res 2005 in press.
-
(2005)
Nucleic Acids Res.
-
-
Mlecnik, B.1
Scheideler, M.2
Hackl, H.3
Hartler, J.4
Sanchez-Cabo, F.5
Trajanoski, Z.6
-
18
-
-
0036081062
-
The KEGG databases at GenomeNet
-
Kanehisa M, Goto S, Kawashima S, Nakaya A: The KEGG databases at GenomeNet. Nucleic Acids Res 2002, 30:42-46.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 42-46
-
-
Kanehisa, M.1
Goto, S.2
Kawashima, S.3
Nakaya, A.4
-
19
-
-
84874666230
-
-
BioCarta - Charting Pathways of Life
-
BioCarta - Charting Pathways of Life [http://www.biocarta.com]
-
-
-
-
20
-
-
0037316318
-
QuickLIMS: Facilitating the data management for DNA-microarray fabrication
-
Kokocinski F, Wrobel G, Hahn M, Lichter P: QuickLIMS: facilitating the data management for DNA-microarray fabrication. Bioinformatics 2003, 19:283-284.
-
(2003)
Bioinformatics
, vol.19
, pp. 283-284
-
-
Kokocinski, F.1
Wrobel, G.2
Hahn, M.3
Lichter, P.4
-
21
-
-
0037099005
-
BioArray Software Environment (BASE): A platform for comprehensive management and analysis of microarray data
-
SOFTWARE0003.1-SOFTWARE0003.6
-
Saal LH, Troein C, Vallon-Christersson J, Gruvberger S, Borg A, Peterson C: BioArray Software Environment (BASE): a platform for comprehensive management and analysis of microarray data. Genome Biol 2002, 3:SOFTWARE0003.1-SOFTWARE0003.6.
-
(2002)
Genome Biol.
, vol.3
-
-
Saal, L.H.1
Troein, C.2
Vallon-Christersson, J.3
Gruvberger, S.4
Borg, A.5
Peterson, C.6
-
23
-
-
0642340504
-
The Longhorn Array Database (LAD): An Open-Source, MIAME compliant implementation of the Stanford Microarray Database (SMD)
-
Killion PJ, Sherlock G, Iyer VR: The Longhorn Array Database (LAD): An Open-Source, MIAME compliant implementation of the Stanford Microarray Database (SMD). BMC Bioinformatics 2003, 4:32-32.
-
(2003)
BMC Bioinformatics
, vol.4
, pp. 32-32
-
-
Killion, P.J.1
Sherlock, G.2
Iyer, V.R.3
-
24
-
-
0037249405
-
The Stanford Microarray Database: Data access and quality assessment tools
-
Gollub J, Ball CA, Binkley G, Demeter J, Finkelstein DB, Hebert JM, Hernandez-Boussard T, Jin H, Kaloper M, Matese JC, Schroeder M, Brown PO, Botstein D, Sherlock G: The Stanford Microarray Database: data access and quality assessment tools. Nucleic Acids Res 2003, 31:94-96.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 94-96
-
-
Gollub, J.1
Ball, C.A.2
Binkley, G.3
Demeter, J.4
Finkelstein, D.B.5
Hebert, J.M.6
Hernandez-Boussard, T.7
Jin, H.8
Kaloper, M.9
Matese, J.C.10
Schroeder, M.11
Brown, P.O.12
Botstein, D.13
Sherlock, G.14
-
25
-
-
13244287834
-
GECKO: A complete large-scale gene expression analysis platform
-
Theilhaber J, Ulyanov A, Malanthara A, Cole J, Xu D, Nahf R, Heuer M, Brockel C, Bushnell S: GECKO: a complete large-scale gene expression analysis platform. BMC Bioinformatics 2004, 5:195-195.
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 195
-
-
Theilhaber, J.1
Ulyanov, A.2
Malanthara, A.3
Cole, J.4
Xu, D.5
Nahf, R.6
Heuer, M.7
Brockel, C.8
Bushnell, S.9
-
26
-
-
0037246058
-
ArrayExpress - A public repository for microarray gene expression data at the EBI
-
Brazma A, Parkinson H, Sarkans U, Shojatalab M, Vilo J, Abeygunawardena N, Holloway E, Kapushesky M, Kemmeren P, Lara GG, Oezcimen A, Rocca-Serra P, Sansone SA: ArrayExpress - a public repository for microarray gene expression data at the EBI. Nucleic Acids Res 2003, 31:68-71.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 68-71
-
-
Brazma, A.1
Parkinson, H.2
Sarkans, U.3
Shojatalab, M.4
Vilo, J.5
Abeygunawardena, N.6
Holloway, E.7
Kapushesky, M.8
Kemmeren, P.9
Lara, G.G.10
Oezcimen, A.11
Rocca-Serra, P.12
Sansone, S.A.13
-
27
-
-
0036081355
-
Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
-
Edgar R, Domrachev M, Lash AE: Gene Expression Omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Res 2002, 30:207-210.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 207-210
-
-
Edgar, R.1
Domrachev, M.2
Lash, A.E.3
-
28
-
-
84874647994
-
-
JBoss.com:: The Professional Open Source Company
-
JBoss.com:: The Professional Open Source Company [http://www.jboss.org]
-
-
-
-
29
-
-
2342628481
-
Data standards for 'omic' science
-
Quackenbush J: Data standards for 'omic' science. Nat Biotechnol 2004, 22:613-614.
-
(2004)
Nat. Biotechnol.
, vol.22
, pp. 613-614
-
-
Quackenbush, J.1
-
30
-
-
0038391443
-
Bagging to improve the accuracy of a clustering procedure
-
Dudoit S, Fridlyand J: Bagging to improve the accuracy of a clustering procedure. Bioinformatics 2003, 19:1090-1099.
-
(2003)
Bioinformatics
, vol.19
, pp. 1090-1099
-
-
Dudoit, S.1
Fridlyand, J.2
-
31
-
-
84874653789
-
-
The MathWorks - Matlab and Simulink for Technical Computing
-
The MathWorks - Matlab and Simulink for Technical Computing [http://www.mathworks.com]
-
-
-
-
32
-
-
84874658420
-
-
Samba - opening windows to a wider world
-
Samba - opening windows to a wider world [http://www.samba.org]
-
-
-
-
33
-
-
84874667499
-
-
OpendLDAP
-
OpendLDAP [http://www.openldap.org]
-
-
-
-
36
-
-
0037433750
-
Java editor for biological pathways
-
Trost E, Hackl H, Maurer M, Trajanoski Z: Java editor for biological pathways. Bioinformatics 2003, 19:786-787.
-
(2003)
Bioinformatics
, vol.19
, pp. 786-787
-
-
Trost, E.1
Hackl, H.2
Maurer, M.3
Trajanoski, Z.4
|