Nicking activity on pBR322 DNA of ribosome inactivating proteins from Phytolacca dioica L. leaves

Biological Chemistry

Volumn 386, Issue 4, 2005, Pages 307-317

  Aceto, Serena ^a   Di Maro, Antimo ^b   Conforto, Barbara ^b   Siniscalco, Gesualdo G ^a   Parente, Augusto ^b   Delli Bovi, Pasquale ^a   Gaudio, Luciano ^a  

^a UNIVERSITY OF NAPLES FEDERICO II   (Italy)

^b SECOND UNIVERSITY OF NAPLES   (Italy)

Author keywords

Nicking DNA activity; pBR322; Phytolacca dioica; Ribosome inactivating proteins

Indexed keywords

DNA FRAGMENT; PLANT DNA; PLANT EXTRACT; RIBOSOME INACTIVATING PROTEIN; GLYCOSIDASE; POKEWEED ANTIVIRUS PROTEIN; RIBOSOME RNA; VEGETABLE PROTEIN;

3' UNTRANSLATED REGION; 5' UNTRANSLATED REGION; ARTICLE; CONTROLLED STUDY; DNA CLEAVAGE; DNA NICK TRANSLATION; DOWNSTREAM PROCESSING; ENZYME GLYCOSYLATION; GENE DELETION; NONHUMAN; PENICILLIN RESISTANCE; PHYTOLACCA DIOICA; PHYTOLACCACEAE; PLANT LEAF; PRIORITY JOURNAL; SODIUM RESTRICTION; DNA SUPERCOILING; GENETICS; ISOLATION AND PURIFICATION; METABOLISM; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PLASMID; POKEWEED;

PHYTOLACCA DIOICA; VIGNA RADIATA VAR. RADIATA;

BASE SEQUENCE; DNA, SUPERHELICAL; MOLECULAR SEQUENCE DATA; N-GLYCOSYL HYDROLASES; PHYTOLACCA; PLANT LEAVES; PLANT PROTEINS; PLASMIDS; RNA, RIBOSOMAL;

EID: 25144519255     PISSN: 14316730     EISSN: 14316730     Source Type: Journal    
DOI: 10.1515/BC.2005.037     Document Type: Article

References (40)

1. Adams, R.L.P., Knowler, J.T., and Leader, D.P. (1986). Degradation and modification of nucleic acids. In: The Biochemistry of the Nucleic Acids, Xth edition (London - New York: Chapman and Hall), p. 87.
2. 31P-NMR. Nucleic Acids Res. 23, 3850-3857.
3. Bagga, S., Seth, D., and Batra, J.K. (2003). The cytotoxic activity of ribosome-inactivating protein saporin-6 is attributed to rRNA N-glycosidase and internucleosomal DNA fragmentation. J. Biol. Chem. 14, 4813-4820.
4. Barbieri, L., Battelli, M.G., and Stirpe, F. (1993). Ribosome-inactivating proteins from plants. Biochim. Biophys. Acta 1154, 237-282.
5. Barbieri, L., Valbonesi, P., Gorini, P., Pession, A., and Stirpe, F. (1996). Polynucleotide: adenosine glycosidase activity of saporin-L1: effect on DNA, RNA and poly(A). Biochem. J. 319, 507-513.
6. Barbieri, L., Valbonesi, P., Bonora, E., Gorini, P., Bolognesi, A. and Stirpe, F. (1997). Polynucleotide:adenosine glycosidase activity of ribosome-inactivating proteins: effect on DNA, RNA and poly(A). Nucleic Acids Res. 25, 518-522.
7. Barbieri, L., Valbonesi, P., Righi, F., Zuccheri, G., Monti, F., Gorini, P., Samorí, B., and Stirpe, F. (2000). Polynucleotide: adenosine glycosidase is the sole activity of ribosomeinactivating proteins on DNA. J. Biochem. (Tokyo) 128, 883-889.
8. Barbieri, L., Brigotti, M., Perocco, P., Carnicelli, D., Ciani, M., Mercatali, L., and Stirpe, F. (2003). Ribosome-inactivating proteins depurinate poly(ADP-ribosyl)ated poly(ADP-ribose) polymerase and have transforming activity for 3T3 fibroblasts. FEBS Lett. 538, 178-182.
9. Bolognesi, A., Polito, L., Lubelli C., Barbieri, L., Parente, A., and Stirpe, F. (2002). Ribosome-inactivating and adenine polynucleotide glycosylase activities in Mirabilis jalapa L. tissues. J. Biol. Chem. 277, 13709-13716.
10. Brigotti, M., Alfieri, R., Sestili, P., Bonelli, M., Petronini, P.G., Guidarelli, A., Barbieri, L., Stirpe, F., and Sperti, S. (2002). Damage to nuclear DNA induced by Shiga toxin 1 and ricin in human endothelial cells. FASEB J. 16, 365-372.
11. Citores, L., Ferreras, J.M., Iglesias, R., Garbajales, M.L., Axias, F.J., Jimenez, P., Rojo, M.A., and Girbes, T. (1993). Molecular mechanism of inhibition of mammalian protein synthesis by some four-chain agglutinins. Proposal of an extended classification of plant ribosome-inactivating proteins (rRNA N-glycosidases). FEBS Lett. 329, 59-62.
12. Conforto, B. (2002). Studio dell'espressione e della localizzazione di Proteine Inattivanti i Ribosomi in foglie di Phytolacca dioica L. Ph.D. thesis (in Italian) (Caserta, Italy: Seconda Universitá di Napoli).
13. Day, P.J., Lord, J.M., and Roberts, L.M. (1998). The deoxyribonuclease activity attributed to ribosome-inactivating proteins is due to contamination. Eur. J. Biochem. 258, 540-545.
14. De Benito, F.M., Citores, L., Iglesias, R., Ferreras, M.J., Soriano, F., Arias, J., Mendez, E., and Girbes, T. (1995). Ebulitins: a new family of type 1 ribosome-inactivating proteins (rRNA N-glycosidases) from leaves of Sambucus ebulus L. that coexist with the type 2 ribosome-inactivating protein ebulin 1. FEBS Lett. 360, 299-302.
15. Desai, N.A. and Shankar, V. (2003). Single-strand-specific nucleases. FEMS Microbiol. Rev. 26, 457-491.
16. Di Maro, A., Valbonesi, P., Bolognesi, A., Stirpe, F., De Luca, P., Siniscalco Gigliano, G., Gaudio, L., Delli Bovi, P., Ferranti, P., Malori, A., and Parente, A. (1999). Isolation and characterization of four type-1 ribosome-inactivating proteins, with polynucleotide:adenosine glycosidase activity, from leaves of Phytolacca dioica L. Planta 208, 125-131.
17. Dunaeva, M., Goebel, C., Wasternack, C., Parthier, B., and Goerschen, E. (1999). The jasmonate-induced 60 kDa protein of barley exhibits N-glycosidase activity in vivo. FEBS Lett. 452, 263-266.
18. Endo, Y., Mitsui, K., Motizukin, M., and Tsurugi, K. (1987). The mechanism of action of ricin and related toxic lectins on eukaryotic ribosomes. The site and the characteristics of the modification in 28 S ribosomal RNA caused by the toxins. J. Biol. Chem. 262, 5908-5912.
19. Endo, Y., Tsurugi, K., Yutsudo, T., Takeda, Y., Ogasawara, T., and Igarashi, K. (1988). Site of action of a Vero toxin (VT2) from Escherichia coli 0157:H7 and of Shiga toxin on eukaryotic ribosomes. RNA N-glycosidase activity of the toxins. Eur. J. Biochem. 171, 45-50.
20. Hao, Q., Peumans, W.J., and Van Damme, E.J. (2001). Type-1 ribosome-inactivating protein from iris (Iris hollandica var. Professor Blaauw) binds specific genomic DNA fragments. Biochem. J. 357, 875-880.
21. Hartley, M.R., Legname, G., Osborn R., Chen, Z., and Lord, J.M. (1991). Single-chain ribosome inactivating proteins from plants depurinate Escherichia coli 23S ribosomal RNA. FEBS Lett. 290, 65-68.
22. Huang, Y. and Kowalski, D. (2003). In Web-Thermodyn: sequence analysis software for profiling DNA helical stability. Nucleic Acids Res. 31, 3819-3821.
23. Kowalski, D., Kroeker, W.D., and Laskowski, M. Sr. (1976). Mung bean nuclease I. Physical, chemical, and catalytic properties. Biochemistry 15, 4457-4463.
24. Kowalski, D., Natale D.A., and Eddy, M.J. (1988). Stable DNA unwinding, not 'breathing', accounts for single-strand-specific nuclease hypersensitivity of specific A+T-rich sequences. Proc. Natl. Acad. Sci. USA 85, 9464-9468.
25. Li, M.X., Yeung, H.W., Pan, L.P., and Chan, S.I. (1991). Trichosanthin, a potent HIV-1 inhibitor, can cleave supercoiled DNA in vitro. Nucleic Acids Res. 19, 6309-6312.
26. Ling, J., Liu, W, and Wang, T.P. (1994). Cleavage of supercoiled double-stranded DNA by several ribosome- inactivating proteins in vitro. FEBS Lett. 345, 143-146.
27. Liu, R.S., Yang, J.H., and Liu, W.Y. (2002a). Isolation and enzymatic characterisation of lamjapin, the first ribosome-inactivating protein from cryptogamic algal plant (Laminaria japonica A). Eur. J. Biochem. 269, 4746-4752.
28. Liu, R.S., Wei, G.Q., Yang, Q., He, W.J., and Liu, W.Y. (2002b). Cinnamomin, a type II ribosome-inactivating protein, is a storage protein in the seed of the camphor tree (Cinnamomum camphora). Biochem. J. 362, 659-663.
29. Nicolas, E., Beggs, J.M., Haltiwanger, B.M., and Taraschi, T.F. (1997a). Direct evidence for the deoxyribonuclease activity of the plant ribosome inactivating protein gelonin. FEBS Lett. 406, 162-164.
30. Nicolas, E., Goodyer, I.D., and Taraschi, T.F. (1997b). An additional mechanism of ribosome-inactivating protein cytotoxicity: degradation of extrachromosomal DNA. Biochem. J. 327, 413-417.
31. Nielsen, K. and Boston, R.S. (2001). Ribosome-inactivating proteins: a plant perspective. Annu. Rev. Plant Physiol. Plant. Mol. Biol. 52, 785-816.
32. Parente, A., De Luca, P., Bolognesi, A., Battelli, M.G., Abbondanza, A., Sande, M.J.W., Siniscalco Gigliano, G., Tazzari, P.L., and Stirpe, F. (1993). Purification and partial characterization of single-chain ribosome-inactivating proteins from the seeds of Phytolacca dioica L. Biochim. Biophys. Acta 1216, 43-49.
33. Park, S.W., Vepachedu, R., Owens, R.A., and Vivanco, J.M. (2004). The N-glycosidase activity of the ribosome-inactivating protein ME1 targets single-stranded regions of nucleic acids independent of sequence or structural motifs. J. Biol. Chem. 279, 34165-34174.
34. Peumans, W.J., Hao, Q., and Van Damme, E.J. (2001). Ribosome-inactivating proteins from plants: more than RNA N-glycosidases? FASEB J. 15, 1493-1506.
35. Roncuzzi, L. and Gasperi-Campani, A. (1996). DNA-nuclease activity of the single-chain ribosome-inactivating proteins dianthin 30, saporin 6 and gelonin. FEBS Lett. 392, 16-20.
36. Sambrook, J., Fitsch, E.F., and Maniatis, T. (1989). Molecular Cloning: A Laboratory Manual (Cold Spring Harbor, New York, USA: Cold Spring Harbor Laboratory Press).
37. Sheflin, L.G. and Kowalski, D. (1985). Altered DNA conformations detected by Mung bean nuclease occur in promoter and terminator regions of supercoiled pBR322 DNA. Nucleic Acids Res. 13, 6137-6154.
38. Wang, P. and Tumer, N.E. (1999). Pokeweed antiviral protein cleaves double-stranded supercoiled DNA using the same active site required to depurinate rRNA. Nucleic Acids Res. 27, 1900-1905.
39. Wang, Y.X., Neamati, N., Jacob, J., Palmer, I., Stahl, S.J., Kaufman, J.D., Huang, P.L., Huang, P.L., Winslow, H.E., Pommier, Y., et al. (1999). Solution structure of anti-HIV-1 and antitumor protein MAP30: structural insights into its multiple functions. Cell 99, 433-442.
40. Yao, Q.Z., Yu, M.M., Ooi, L.S.M., Ng, T.B., Chang, S.T., Sun, S.S.M., and Ooi, V.E.C. (1998). Isolation and characterisation of a type 1 ribosome-inactivating protein from fruiting bodies of the edible mushroom (Volvariella volvacea). J. Agric. Food Chem. 46, 788-792.