Identification of the critical region in Replication factor C from Pyrococcus furiosus for the stable complex formation with Proliferating cell nuclear antigen and DNA

Genes and Genetic Systems

Volumn 80, Issue 2, 2005, Pages 83-93

  Nishida, Hirokazu ^a   Ishino, Sonoko ^a   Miyata, Tomoko ^a   Morikawa, Kosuke ^a   Ishino, Yoshizumi ^a,b  

^a BIOMOL ENG RESEARCH INSTITUTE   (Japan)

^b KYUSHU UNIVERSITY   (Japan)

Author keywords

Archaea; DNA replication; Proliferating cell nuclear antigen; Pyrococcus furiosus; Replication factor c

Indexed keywords

AMINO ACID; ARCHAEAL PROTEIN; BACTERIAL DNA; CYCLINE; DNA POLYMERASE; DOUBLE STRANDED DNA; GLUTAMIC ACID; LYSINE; MUTANT PROTEIN; PROTEIN SUBUNIT; REPLICATION FACTOR C;

ARTICLE; BACTERIUM IDENTIFICATION; CARBOXY TERMINAL SEQUENCE; CELL PROLIFERATION; COMPLEX FORMATION; CONSENSUS SEQUENCE; CONTROLLED STUDY; DNA REPLICATION; DNA SEQUENCE; DNA SYNTHESIS; DNA TEMPLATE; EUKARYOTIC CELL; GENE CLUSTER; GENETIC IDENTIFICATION; MUTATIONAL ANALYSIS; NONHUMAN; PROMOTER REGION; PROTEIN ANALYSIS; PROTEIN INTERACTION; PROTEIN STRUCTURE; PYROCOCCUS FURIOSUS; SEQUENCE HOMOLOGY; STRUCTURE ANALYSIS;

AMINO ACID SEQUENCE; ARCHAEAL PROTEINS; DNA MUTATIONAL ANALYSIS; DNA REPLICATION; DNA, ARCHAEAL; DNA-BINDING PROTEINS; MOLECULAR SEQUENCE DATA; MUTAGENESIS, SITE-DIRECTED; PROLIFERATING CELL NUCLEAR ANTIGEN; PROTEIN BINDING; PYROCOCCUS FURIOSUS; REPLICATION PROTEIN C; SURFACE PLASMON RESONANCE;

ARCHAEA; EUKARYOTA; PYROCOCCUS FURIOSUS;

EID: 25144451780     PISSN: 13417568     EISSN: None     Source Type: Journal    
DOI: 10.1266/ggs.80.83     Document Type: Article

References (29)

1. Bruck, I.,and O'Donnell, M. (2001) The ring-type polymerase sliding clamp family. Genome Biol. 2, 3001.1-3001.
2. Cann, I. K. O., Ishino, S., Hayashi, I., Komori, K., Toh, H., Morikawa, K., and Ishino, Y. (1999) Functional interactions of a homolog of proliferating cell nuclear antigen with DNA polymerases in Archaea. J. Bacteriol. 181, 6591-6599.
3. Cann, I. K. O., Ishino, S., Yuasa, M., Daiyasu, H., Toh, H., and Ishino, Y. (2001) Biochemical analysis of replication factor C from the hyperthermophilic archaeon Pyrococcus furiosus. J. Bacteriol. 183, 2614-2623.
4. Cann, I. K. O., and Ishino, Y. (1999) Archaeal DNA replication: Identifying the pieces to solve a puzzle. Genetics 152, 1249-1267.
5. Davey, M. J., Jeruzalmi D., Kuriyan J., and O'Donnell, M. O. (2002) Motors and switches: AAA+ machines within the replisome. Nature Review Molecular Cell Biology 3, 826-835.
6. Edgell, D. R., and Doolittle, W. F. (1997) Archaea and the origin(s) of DNA replication proteins. Cell 89, 995-998.
7. Gulbis, J. M., Kelman, Z., Hurwitz, J., O'Donnell, M., and Kuriyan, J. (1996) Structure of the C-terminal region of p21(WAF1/CIP1) complexed with human PCNA. Cell 87, 297-306.
8. Henneke, G., Gueguen, Y., Flament, D., Azam, P., Querellou, J., Dietrich, J., Hubscher U., and Raffin J. P. (2002) Replication factor C from the hyperthermophilic archaeon Pyrococcus abyssi does not need ATP hydrolysis for clamp-loading and contains a functionally conserved RFC PCNA-binding domain. J. Mol. Biol. 323, 795-810.
9. Hingorani, M. M., and O'Donnell, M. (2000) Sliding clamps: a (tail)ored fit. Curr. Biol. 10, R25-R29.
10. Ishino, Y., and Cann, I. K. O. (1998) The euryarchaeotes, a sub-domain of Archaea, survive on a single DNA polymerase: fact or farce? Genes Genet. Syst. 73, 323-336.
11. Ishino, Y., and Ishino, S. (2001) DNA polymerases from euryarchaeota. Methods Enzymol. 334, 249-260.
12. Jeruzalmi, D., Yurieva, O., Zhao, Y., Young, M., Stewart J., Hingorani, M., O'Donnell, M., and Kuriyan, J. (2001) Mechanism of processivity clamp opening by the delta subunit wrench of the clamp loader complex of E. coli DNA polymerase III. Cell 106, 417-428.
13. Kelman, Z., and Hurwitz, J. (2000) A unique organization of the protein subunits of the DNA polymerase clamp loader in the archaeon Methanobacterium thermoautotrophicum ΔH. J. Biol. Chem. 275, 7237-7336.
14. Komori, K., and Ishino, Y. (2000) Functional interdependence of DNA polymerizing and 3′-5′ exonucleolytic activities in Pyrococcus furiosus DNA polymerase I. Protein Eng. 13, 41-47.
15. Matsumiya, S., Ishino, S., Ishino, Y., and Morikawa, K. (2002) Physical interaction between proliferating cell nuclear antigen and replication factor C from Pyrococcus furiosus. Genes Cells 7, 911-922.
16. Matsumiya, S., Ishino, Y., and Morikawa, K. (2001) Crystal structure of an archaeal DNA sliding clamp: proliferating cell nuclear antigen from Pyrococcus furiosus. Protein Sci. 10, 17-23.
17. Mayer, M. L., Gygi, S. P., Aebersold, R., and Hieter, P. (2001) Identification of RFC(Ctf18p, Ctf8p, Dcc1p): an alternative RFC complex required for sister chromatid cohesion in S. cerevisiae. Mol. Cell 7, 959-970.
18. Miyata, T., Oyama, T., Mayanagi, K., Ishino, S., Ishino, Y., and Morikawa, K. (2004) The clamp-loading complex for processive DNA replication. Nat. Struct. Mol. Biol. 11, 632-636.
19. Mossi, R. and Hübscher, U. (1998) Clamping down on clamps and clamp loaders the eukaryotic replication factor C. Eur. J. Biochem. 254, 209-216.
20. Mossi, R., Keller, R. C., Ferrari, E., and Hübscher, U. (2000) DNA polymerase switching: II. Replication factor C abrogates primer synthesis by DNA polymerase alpha at a critical length. J. Mol. Biol. 295, 803-814.
21. Naiki, T., Kondo, T., Nakada, D., Matsumoto, K., and Sugimoto, K. (2001) Chl12 (Ctf18) forms a novel replication factor C-related complex and functions redundantly with Rad24 in the DNA replication checkpoint pathway. Mol. Cell. Biol. 21, 5838-5845.
22. Nicholls, A., Sharp, K. A., and Honig, B. (1991) Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons. Proteins 11, 281-296.
23. Pisani, F. M., De Felice, M., Carpentieri, F., and Rossi, M. (2000) Biochemical characterization of a clamp-loader complex homologous to eukaryotic replication factor C from the hyperthermophilic archaeon Sulfolobus solfataricus. J. Mol. Biol. 301, 61-73.
24. Shamoo, Y., and Steitz, T. A. (1999) Building a replisome from interacting pieces: sliding clamp complexed to a peptide from DNA polymerase and a polymerase editing complex. Cell 99, 155-166.
25. Trakselis, M. A., and Benkovic, S. J. (2001) Intricacies in ATP-dependent clamp loading: variations across replication systems. Structure 9, 999-1004.
26. Wabrick, E. M. (2000) The puzzle of PCNA's many partners. BioEssays 22, 997-1006.
27. Waga, S., and Stillman, B. (1998) The DNA replication fork in eukaryotic cells. Annu. Rev. Biochem. 67, 721-751.
28. Woese., C. R., and Fox, G. E. (1977) Phylogenetic structure of the prokaryotic domain: the primary kingdoms. Proc. Natl. Acad. Sci. USA 74, 5088-5090.
29. Yao, N., Turner, J., Kelman, Z., Stukenberg, P. T., Dean, F., Shechter, D., Pan, Z. Q., Hurwitz, J., and O'Donnell, M. (1996) Clamp loading, unloading and intrinsic stability of the PCNA, beta and gp45 sliding clamps of human, E. coli and T4 replicases. Genes Cells 1, 101-113.