메뉴 건너뛰기




Volumn 61, Issue 3, 2005, Pages 341-350

Signs of ancient and modern exon-shuffling are correlated to the distribution of ancient and modern domains along proteins

Author keywords

Exon shuffling; Introns early; Introns late; Protein domains

Indexed keywords

ARTICLE; CORRELATION ANALYSIS; EUKARYOTE; EXON; INTRON; MOLECULAR EVOLUTION; OPEN READING FRAME; PROKARYOTE; PROTEIN DOMAIN; THEORY;

EID: 25144449591     PISSN: 00222844     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00239-004-0318-y     Document Type: Article
Times cited : (26)

References (34)
  • 3
    • 0001126390 scopus 로고
    • Do genes-in-pieces imply proteins-in-pieces?
    • Blake CCF (1978) Do genes-in-pieces imply proteins-in-pieces? Nature 273:267
    • (1978) Nature , vol.273 , pp. 267
    • Blake, C.C.F.1
  • 5
    • 0025810123 scopus 로고
    • Intron phylogeny: A new hypothesis
    • Cavalier-Smith T (1991) Intron phylogeny: a new hypothesis. Trends Genet 7:145-148
    • (1991) Trends Genet , vol.7 , pp. 145-148
    • Cavalier-Smith, T.1
  • 6
    • 3843113189 scopus 로고    scopus 로고
    • Origins of recently gained introns in Caenorhabditis
    • USA
    • Coghlan A, Wolfe KH (2004) Origins of recently gained introns in Caenorhabditis. Proc Natl Acad Sci USA 101:11362-11367
    • (2004) Proc Natl Acad Sci , vol.101 , pp. 11362-11367
    • Coghlan, A.1    Wolfe, K.H.2
  • 7
    • 0038306163 scopus 로고    scopus 로고
    • The emergence of a synthetic theory of intron evolution
    • de Souza SJ (2003) The emergence of a synthetic theory of intron evolution. Genetica 118:117-121
    • (2003) Genetica , vol.118 , pp. 117-121
    • De Souza, S.J.1
  • 8
    • 0029906594 scopus 로고    scopus 로고
    • Intron positions correlate with module boundaries in ancient proteins
    • USA
    • de Souza SJ, Long M, Schoenbach L, Roy SW, Gilbert W (1996) Intron positions correlate with module boundaries in ancient proteins. Proc Natl Acad Sci USA 93:14632-14636
    • (1996) Proc Natl Acad Sci , vol.93 , pp. 14632-14636
    • Souza, S.J.1    Long, M.2    Schoenbach, L.3    Roy, S.W.4    Gilbert, W.5
  • 9
    • 0032574738 scopus 로고    scopus 로고
    • Toward a resolution of the introns early/late debate: Only phase zero introns are correlated with the structure of ancient proteins
    • USA
    • de Souza SJ, Long M, Klein RJ, Roy S, Lin S, Gilbert W (1998) Toward a resolution of the introns early/late debate: only phase zero introns are correlated with the structure of ancient proteins. Proc Natl Acad Sci USA 95:5094-5099
    • (1998) Proc Natl Acad Sci , vol.95 , pp. 5094-5099
    • De Souza, S.J.1    Long, M.2    Klein, R.J.3    Roy, S.4    Lin, S.5    Gilbert, W.6
  • 10
    • 34547642637 scopus 로고
    • Genes in pieces: Were they ever together?
    • Doolittle WF (1978) Genes in pieces: were they ever together? Nature 272:581-582
    • (1978) Nature , vol.272 , pp. 581-582
    • Doolittle, W.F.1
  • 12
    • 0035818503 scopus 로고    scopus 로고
    • Intron distribution difference for 276 ancient and 131 modern genes suggests the existence of ancient introns
    • USA
    • Fedorov A, Cao X, Saxonov S, de Souza SJ, Roy SW, Gilbert W (2001) Intron distribution difference for 276 ancient and 131 modern genes suggests the existence of ancient introns. Proc Natl Acad Sci USA 98:13177-13182
    • (2001) Proc Natl Acad Sci , vol.98 , pp. 13177-13182
    • Fedorov, A.1    Cao, X.2    Saxonov, S.3    De Souza, S.J.4    Roy, S.W.5    Gilbert, W.6
  • 13
    • 0038817793 scopus 로고    scopus 로고
    • Phylogenetically older introns strongly correlate with module boundaries in ancient proteins
    • Fedorov A, Roy S, Cao X, Gilbert W (2003) Phylogenetically older introns strongly correlate with module boundaries in ancient proteins. Genome Res 13:1155-1157
    • (2003) Genome Res , vol.13 , pp. 1155-1157
    • Fedorov, A.1    Roy, S.2    Cao, X.3    Gilbert, W.4
  • 14
    • 0018263844 scopus 로고
    • Why genes in pieces?
    • Gilbert W (1978) Why genes in pieces? Nature 271:501
    • (1978) Nature , vol.271 , pp. 501
    • Gilbert, W.1
  • 16
  • 17
    • 4143069189 scopus 로고    scopus 로고
    • Protein domains correlate strongly with exons in multiple eukaryotic genomes: Evidence of exon shuffling?
    • Liu M, Grigoriev A (2004) Protein domains correlate strongly with exons in multiple eukaryotic genomes: evidence of exon shuffling? Trends Genet 20:399-403
    • (2004) Trends Genet , vol.20 , pp. 399-403
    • Liu, M.1    Grigoriev, A.2
  • 18
    • 0029586334 scopus 로고
    • Intron phase correlations and the evolution of the intron/exon structure of genes
    • USA
    • Long M, Rosenberg C, Gilbert W (1995) Intron phase correlations and the evolution of the intron/exon structure of genes. Proc Natl Acad Sci USA 92:12495-12499
    • (1995) Proc Natl Acad Sci , vol.92 , pp. 12495-12499
    • Long, M.1    Rosenberg, C.2    Gilbert, W.3
  • 20
    • 0023646322 scopus 로고
    • Intron-dependent evolution: Preferred types of exons and introns
    • Patthy L (1987) Intron-dependent evolution: preferred types of exons and introns. FEBS Lett 214:1-7
    • (1987) FEBS Lett , vol.214 , pp. 1-7
    • Patthy, L.1
  • 21
    • 13244292544 scopus 로고
    • Molecular exchange principles in proteins
    • Patthy L (1991) Molecular exchange principles in proteins. Curr Opin Struct Biol 1:351-361
    • (1991) Curr Opin Struct Biol , vol.1 , pp. 351-361
    • Patthy, L.1
  • 22
    • 0030297695 scopus 로고    scopus 로고
    • Exon shuffling and other ways of module exchange
    • Patthy L (1996) Exon shuffling and other ways of module exchange. Matrix Biol 15:301-310
    • (1996) Matrix Biol , vol.15 , pp. 301-310
    • Patthy, L.1
  • 23
    • 0032885169 scopus 로고    scopus 로고
    • Genome evolution and the evolution of exon-shuffling: Review
    • Patthy L (1999) Genome evolution and the evolution of exon-shuffling: review. Gene 238:103-114
    • (1999) Gene , vol.238 , pp. 103-114
    • Patthy, L.1
  • 24
    • 0038306145 scopus 로고    scopus 로고
    • Modular assembly of genes and the evolution of new functions
    • Patthy L (2003) Modular assembly of genes and the evolution of new functions. Genetica 118:217-231
    • (2003) Genetica , vol.118 , pp. 217-231
    • Patthy, L.1
  • 25
    • 0023989064 scopus 로고
    • Improved tools for biological sequence comparison
    • USA
    • Pearson WR, Lipman DJ (1988) Improved tools for biological sequence comparison. Proc Natl Acad Sci USA 85:2444-2448
    • (1988) Proc Natl Acad Sci , vol.85 , pp. 2444-2448
    • Pearson, W.R.1    Lipman, D.J.2
  • 26
    • 3042548834 scopus 로고    scopus 로고
    • The evolutionary gain of spliceosomal introns: Sequence and phase preferences
    • Qiu WG, Schisler N, Stoltzfus A (2004) The evolutionary gain of spliceosomal introns: sequence and phase preferences. Mol Biol Evol 21:1252-1263
    • (2004) Mol Biol Evol , vol.21 , pp. 1252-1263
    • Qiu, W.G.1    Schisler, N.2    Stoltzfus, A.3
  • 27
    • 0037629718 scopus 로고    scopus 로고
    • Recent evidence for the exon theory of genes
    • Roy SW (2003) Recent evidence for the exon theory of genes. Genetica 118:251-266
    • (2003) Genetica , vol.118 , pp. 251-266
    • Roy, S.W.1
  • 29
    • 0037180494 scopus 로고    scopus 로고
    • The signal of ancient introns is obscured by intron density and homolog number
    • USA
    • Roy SW, Fedorov A, Gilbert W (2002) The signal of ancient introns is obscured by intron density and homolog number. Proc Natl Acad Sci USA 99:15513-15517
    • (2002) Proc Natl Acad Sci , vol.99 , pp. 15513-15517
    • Roy, S.W.1    Fedorov, A.2    Gilbert, W.3
  • 30
    • 1842535132 scopus 로고    scopus 로고
    • Exon junction sequences as cryptic splice sites: Implications for intron origin
    • Sadusky T, Newman AJ, Dibb NJ (2004) Exon junction sequences as cryptic splice sites: implications for intron origin. Curr Biol 14:505-509
    • (2004) Curr Biol , vol.14 , pp. 505-509
    • Sadusky, T.1    Newman, A.J.2    Dibb, N.J.3
  • 34
    • 0034255318 scopus 로고    scopus 로고
    • No footprints of primordial introns in a eukaryotic genome
    • Wolf YI, Kondrashov FA, Koonin EV (2000) No footprints of primordial introns in a eukaryotic genome. Trends Genet 16:333-334
    • (2000) Trends Genet , vol.16 , pp. 333-334
    • Wolf, Y.I.1    Kondrashov, F.A.2    Koonin, E.V.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.