The bromodomain protein GTE6 controls leaf development in Arabidopsis by histone acetylation at ASYMMETRIC LEAVES1

Genes and Development

Volumn 19, Issue 18, 2005, Pages 2245-2254

  Yii, Leng Chua ^a   Channelière, Stéphanie ^a,b   Mott, Ellie ^a   Gray, John C ^a  

^a UNIVERSITY OF CAMBRIDGE   (United Kingdom)

^b SORBONNE UNIVERSITÉ   (France)

Author keywords

Arabidopsis; Bromodomain protein; Heteroblasty; Histone acetylation; Phase transition

Indexed keywords

GENERAL TRANSCRIPTION FACTOR; GENERAL TRANSCRIPTION FACTOR GROUP E6; HISTONE; HISTONE H3; HISTONE H4; PROTEIN MYB; UNCLASSIFIED DRUG;

ACETYLATION; ARABIDOPSIS; ARTICLE; CHROMATIN; GENETIC EPISTASIS; GENETIC TRANSCRIPTION; IMMUNOPRECIPITATION; LEAF DEVELOPMENT; LEAF MORPHOLOGY; MUTATION; NONHUMAN; PLANT DEVELOPMENT; PLANT GENETICS; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN EXPRESSION; PROTEIN FUNCTION; REGULATORY MECHANISM; TRANSCRIPTION REGULATION; UPREGULATION; VEGETATIVE STAGE;

ACETYLATION; ARABIDOPSIS; ARABIDOPSIS PROTEINS; CHROMATIN IMMUNOPRECIPITATION; EPISTASIS, GENETIC; GENE EXPRESSION REGULATION, PLANT; GENES, PLANT; GREEN FLUORESCENT PROTEINS; HISTONES; HOMEODOMAIN PROTEINS; MICROSCOPY, CONFOCAL; MUTAGENESIS, INSERTIONAL; MUTATION; PLANT LEAVES; PROMOTER REGIONS (GENETICS); RECOMBINANT FUSION PROTEINS; TRANSCRIPTION FACTORS;

ARABIDOPSIS; LAMIINAE;

EID: 24944495793     PISSN: 08909369     EISSN: None     Source Type: Journal    
DOI: 10.1101/gad.352005     Document Type: Article

References (51)

1. Alonso, J.M., Stepanova, A.N., Leisse, T.J., Kim, C.J., Chen, H., Shinn, P., Stevenson, D.K., Zimmerman, J., Barajas, P., Cheuk, R., et al. 2003. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301: 653-657.
2. Baulcombe, D.C., Saunders, G.R., Bevan, M.W., Mayo, M.A., and Harrison, B.D. 1986. Expression of biologically active viral satellite RNA from the nuclear genome of transformed plants. Nature 321: 446-449.
3. Baurens, F.-C., Nicolleau, J., Legavre, T., Verdeil, J.-L., and Monteuuis, O. 2004. Genomic DNA methylation of juvenile and mature Acacia mangium micropropagated in vitro with reference to leaf morphology as a phase change marker. Tree Physiol. 24: 401-407.
4. Byrne, M.E., Barley, R., Curtis, M., Arroyo, J.M., Dunham, M., Hudson, A., and Martienssen, R.A. 2000. Asymmetric leaves1 mediates leaf patterning and stem cell function in Arabidopsis. Nature 408: 967-971.
5. Byrne, M.E., Timmermans, M., Kidner, C., and Martienssen, R. 2001. Development of leaf shape. Curr. Opin. Plant Biol. 4: 38-43.
6. Byrne, M.E., Simorowski, J., and Martienseen, R.A. 2002. ASYMMETRIC LEAVES1 reveals knox gene redundancy in Arabidopsis. Development 29: 1957-1965.
7. Chang, K.T. and Min, K.-T. 2002. Regulation of lifespan by histone deacetylase. Ageing Res. Rev. 1: 313-326.
8. Chen, L., Cheng, J.-C., Castle, L., and Sung, Z.R. 1997. EMF genes regulate Arabidopsis inflorescence development. Plant Cell 9: 2011-2024.
9. Chua, P. and Roeder, S.G. 1995. Bdf1, a yeast chromosomal protein required for sporulation. Mol. Cell. Biol. 15: 3685-3696.
10. Chua, Y.L., Brown, A.P.C., and Gray, J.C. 2001. Targeted histone acetylation and altered nuclease accessibility over short regions of the pea plastocyanin gene. Plant Cell 13: 599-612.
11. Chua, Y.L., Mott, E., Brown, A.P., and Gray, J.C. 2004. Microarray analysis of chromatin-immunoprecipitated DNA identifies specific regions of tobacco genes associated with acetylated histones. Plant J. 37: 789-800.
12. Clough, S.J. and Bent, A.F. 1998. Floral dip: A simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J. 16: 735-743.
13. Day, J.S., Gould, K., and Jameson, P.E. 1997. Vegetative architecture of Elaeocarpus hookerianus. Transition from juvenile to adult. Ann. Bot. 79: 617-624.
14. Dhalluin, C., Carlson, J.E., Zeng, L., He, C., Aggarwal, A.K., and Zhou, M.-M. 1999. Structure and ligand of a histone acetyltransferase bromodomain. Nature 399: 491-496.
15. Eshed, Y., Baum, S.F., and Bowman, J.L. 1999. Distinct mechanisms promote polarity establishment in carpels of Arabidopsis. Cell 99: 199-209.
16. Florence, B. and Faller, D.V. 2001. You bet-cha: A novel family of transcriptional regulators. Front. Biosci. 1: D1008-D1018.
17. Fraga, M.F., Canal, M.J., and Rodriguez, R. 2002. Phase-change related epigenetic and physiological changes in Pinus radiata D. Don. Planta 215: 672-678.
18. Gaudin, V., Libault, M., Pouteau, S., Juul, T., Zhao, G., Lefebvre, D., and Grandjean, O. 2001. Mutations in LIKE HETEROCHROMATIN PROTEIN 1 affect flowering time and plant architecture in Arabidopsis. Development 128: 4847-4858.
19. Gendrel, A.-V., Lippman, Z., Yordan, C., Colot, V., and Martienssen, R.A. 2001. Dependence of heterochromatic histone H3 methylation patterns on the Arabidopsis gene DDM1. Science 297: 1871-1873.
20. Goodrich, J., Puangsomlee, P., Martin, M., Long, D., Meyerowitz, E.M., and Coupland, G. 1997. A polycomb-group gene regulates homeotic gene expression in Arabidopsis. Nature 386: 44-51.
21. Haseloff, J., Siemering, K.R., Prasher, D.C., and Hodge, S. 1997. Removal of a cryptic intron and subcellular localization of green fluorescent protein are required to mark transgenic arabidopsis plants brightly. Proc. Natl. Acad. Sci. 94: 2122-2127.
22. Hassan, A.H., Neely, K.E., and Workman, J.L. 2001. Histone acetyltransferase complexes stabilize SWI/SNF binding to promoter nucleosomes. Cell 104: 817-827.
23. Houzelstein, D., Bullock, S.L., Lynch, D.E., Grigorieva, E.F., Wilson, V.A., and Beddington, R.S.P. 2002. Growth and early postimplantation defects in mice deficient for the bromodomain-containing protein Brd4. Mol. Cell. Biol. 22: 3794-3802.
24. Imai, S.-I., Armstrong, C.M., Kaeberlein, M., and Guarente, L. 2000. Transcriptional silencing and longevity protein Sir2 is an NAD-dependent histone deacetylase. Nature 403: 795-780.
25. Jeanmougin, F., Wurtz, J.-M., Le Douarin, B., Chambon, P., and Losson, R. 1997. The bromodomain revisited. Trends Biochem. Sci. 22: 151-153.
26. Kang, H.-L., Benzer, S., and Min, K.-T. 2002. Life extension in Drosophila by feeding a drug. Proc. Natl. Acad. Sci. 99: 838-843.
27. Katz, A., Oliva, M., Mosquna, A., Hakim, O., and Ohad, N. 2004. FIE and CURLY LEAF polycomb proteins interact in the regulation of homeobox gene expression during sporophyte development. Plant J. 37: 707-719.
28. Kerstetter, R.A. and Poethig, R.S. 1998. The specification of leaf identity during shoot development. Annu. Rev. Cell Dev. Biol. 14: 373-398.
29. Kim, G.-T., Tsukaya, H., Saito, Y., and Uchimiya, H. 1999. Changes in the shapes of leaves and flowers upon overexpression of cytochrome P450 in Arabidopsis. Proc. Natl. Acad. Sci. 96: 9433-9437.
30. Kim, S., Benguria, A., Lai, C.-Y., and Jazwinski, S.M. 1999. Modulation of life-span by histone deacetylase genes in Saccharomyces cerevisiae. Mol. Biol. Cell 10: 3125-3136.
31. Ladurner, A.G., Inouye, C., Jain, R., and Tjian, R. 2003. Bromodomains mediate an acetyl-histone encoded antisilencing function at heterochromatin boundaries. Mol. Cell 11: 365-376.
32. Larsson, A.S., Landberg, K., and Meeks-Wagner, D.R. 1998. The TERMINAL FLOWER2 (TFL2) gene controls the reproductive transition and meristem identity in Arabidopsis thaliana. Genetics 149: 597-605.
33. Lawson, E.J.R. and Poethig, R.S. 1995. Shoot development in plants: Time for a change. Trends Genet. 11: 263-265.
34. Lygerou, Z., Conesa, C., Lesage, P., Swanson, R.N., Ruet, A., Carlson, M., Sentenac, A., and Seraphin, B. 1994. The yeast BDF1 gene encodes a transcription factor involved in the expression of a broad class of genes including snRNA. Nucleic Acids Res. 22: 5332-5340.
35. Meijer, M. and Murray, J.A.H. 2001. Cell cycle controls and the development of plant form. Curr. Opin. Plant Biol. 4: 44-49.
36. Nelissen, H., Clarke, J.H., de Block, M., de Block, S., Vanderhaeghen, R., Zielinski, R.E., Dyer, T., Lust, S., Inze, D., and Lijsebettens, M.V. 2003. DRL, a homolog of the yeast TOT4/KTI12 protein, has a function in meristem activity and organ growth in plants. Plant Cell 15: 639-654.
37. Palatnik, J.F., Allen, E., Wu, X., Schommer, C., Schwab, R., Carrington, J.C., and Weigel, D. 2003. Control of leaf morphogenesis by microRNAs. Nature 425: 257-263.
38. Pandey, R., Muller, A., Napoli, C.A., Selinger, D.A., Pikaard, C.S., Richards, E.J., Bender, J., Mount, D.W., and Jorgensen, R.A. 2002. Analysis of histone acetyltransferase and histone deacetylase families of Arabidopsis thaliana suggests functional diversification of chromatin modification among multicellular eukaryotes. Nucleic Acids Res. 30: 5036-5055.
39. Poethig, R.S. 1990. Phase change and the regulation of shoot morphogenesis in plants. Science 250: 923-930.
40. Semiarti, E., Ueno, Y., Tsukaya, H., Iwakawa, H., Machida, C., and Machida, Y. 2001. The ASYMMETRIC LEAVES2 gene of Arabidopsis thaliana regulates formation of a symmetric lamina, establishment of venation and repression of meristem-related homeobox genes in leaves. Development 128: 1771-1783.
41. Shaefer, B.C. 1995. Revolutions in rapid amplification of cDNA ends: New strategies for polymerase chain reaction cloning of full-length cDNA ends. Anal. Biochem. 227: 255-273.
42. Strahl, B.D. and Allis, C.D. 2000. The language of covalent histone modifications. Nature 403: 41-45.
43. Sullivan, J.A. and Gray, J.C. 2000. The pea light-independent photomorphogenesis1 mutant results from partial duplication of COP1 generating an internal promoter and producing two distinct transcripts. Plant Cell 12: 1927-1937.
44. Telfer, A., Bollman, K.M., and Poethig, R.S. 1997. Phase change and the regulation of trichome distribution in Arabidopsis thaliana. Development 124: 645-654.
45. Theodoris, G., Inada, N., and Freeling, M. 2003. Conservation and molecular dissection of ROUGH SHEATH2 and ASYMMETRIC LEAVES1 function in leaf development. Proc. Natl. Acad. Sci.100: 6837-6842.
46. Thisse, C. and Zon, L.I. 2002. Organogenesis-Heart and blood formation from the zebrafish point of view. Science 295: 457-462.
47. Tian, L. and Chen, J. 2001. Blocking histone deacetylation in Arabidopsis induces pleiotropic effects on plant gene regulation and development. Proc. Natl. Acad. Sci. 98: 200-205.
48. Tissenbaum, H.A. and Guarente, L. 2001. Increased dosage of a sir-2 gene extends lifespan in Caenorhabditis elegans. Nature 410: 227-230.
49. Tsuge, T., Tsukaya, H., and Uchimiya, H. 1996. Two independent and polarized processes of cell elongation regulate leaf blade expansion in Arabidopsis thaliana (L.) Heynh. Development 122: 1589-1600.
50. Wagner, D. 2003. Chromatin regulation of plant development. Curr. Opin. Plant Biol. 6: 20-28.
51. Wierzbicki, A.T. and Jerzmanowski, A. 2004. Suppression of histone H1 genes in Arabidopsis results in heritable developmental defects and stochastic changes in DNA methylation. Genetics 169: 997-1008.