Extraction of leukemia specific glycan motifs in humans by computational glycomics

Carbohydrate Research

Volumn 340, Issue 14, 2005, Pages 2270-2278

  Hizukuri, Yoshiyuki ^a   Yamanishi, Yoshihiro ^a   Nakamura, Osamu ^b   Yagi, Fumio ^c   Goto, Susumu ^a   Kanehisa, Minoru ^a  

^a KYOTO UNIVERSITY   (Japan)

^b NATIONAL INSTITUTE OF ADVANCED INDUSTRIAL SCIENCE AND TECHNOLOGY AIST   (Japan)

^c KAGOSHIMA UNIVERSITY   (Japan)

Author keywords

Computational glycomics; Glycan classification; Glycan motif; Glycome informatics; Support vector machine

Indexed keywords

ANTIBODIES; CARBOHYDRATES; DNA; GENETIC ENGINEERING; LIVING SYSTEMS STUDIES; MEDICINE; PROTEINS; VIRUSES;

COMPUTATIONAL GLYCOMICS; GLYCAN CLASSIFICATION; GLYCAN MOTIFS; GLYCOME INFORMATICS; SUPPORT VECTOR MACHINES;

DISEASES;

GALECTIN; GLYCAN;

AGROCYBE CYLINDRACEA; ARTICLE; BLOOD COMPONENT; CARBOHYDRATE ANALYSIS; CARBOHYDRATE SYNTHESIS; CELL AGGLUTINATION; CONTROLLED STUDY; DATA BASE; ERYTHROCYTE; EXTRACTION; FUNGUS; GLYCOBIOLOGY; HUMAN; HUMAN CELL; LEUKEMIA; LEUKEMIA CELL; MATHEMATICAL COMPUTING; PLASMA; PREDICTION; PRIORITY JOURNAL; PROTEIN BINDING; SERUM;

COMPUTATIONAL BIOLOGY; HUMANS; LEUKEMIA; POLYSACCHARIDES; TUMOR MARKERS, BIOLOGICAL;

AGROCYBE CYLINDRACEA;

EID: 24644454168     PISSN: 00086215     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.carres.2005.07.012     Document Type: Article

References (25)

1. E.L. Sonnhammer, S.R. Eddy, and R. Durbin Proteins: Struct. Funct. Bioinf. 28 1997 405 420
2. F. Corpet, J. Gouzy, and D. Kahn Nucleic Acids Res. 26 1998 323 326
3. A. Bairoch Nucleic Acids Res. 19 1991 2241 2245
4. A. Kobata Glycoconjugate J. 17 2000 443 464
5. T.W. Rademacher, R.B. Parekh, and R.A. Dwek Annu. Rev. Biochem. 57 1988 785 838
6. M. Kanehisa, S. Goto, S. Kawashima, Y. Okuno, and M. Hattori Nucleic Acids Res. 32 2004 D277 D280
7. R. Kannagi, S.B. Levery, and S. Hakomori Proc. Natl. Acad. Sci. U.S.A. 80 1983 2844 2848
8. R. Kannagi, N.A. Cochran, F. Ishigami, S. Hakomori, P.W. Andrews, B.B. Knowles, and D. Solter EMBO J. 2 1983 2355 2361
9. H. Ohba, R. Bakalova, S. Moriwaki, and O. Nakamura Cancer Lett. 184 2002 207 214
10. R. Kannagi, Y. Fukushi, T. Tachikawa, A. Noda, S. Shin, K. Shigeta, N. Hiraiwa, Y. Fukuda, T. Inamoto, S. Hakomori, and H. Imura Cancer Res. 46 1986 2619 2626
11. M.A. Hearst, B. Schoelkopf, S. Dumais, E. Osuna, and J. Platt IEEE Intell. Syst. 13 1998 18 28
12. F. Yagi, M. Miyamoto, T. Abe, Y. Minami, K. Tadera, and I.J. Goldstein Glycoconjugate J. 14 1997 281 288
13. O. Hindsgaul, and R.D. Cummings A. Varki R. Cummings J. Esko H. Freeze G. Hart J. Marth Essentials of Glycobiology 1999 Cold Spring Harbor Laboratory Press 41 56
14. Y. Hizukuri, Y. Yamanishi, K. Hashimoto, and M. Kanehisa Genome Informatics 15 2004 69 81
15. Z. Zheng, S. Venkatapathy, G. Rao, and C.A. Harrington Leukemia 16 2002 2429 2437
16. T.R. Golub, D.K. Slonim, P. Tamayo, C. Huard, M. Gaasenbeek, J.P. Mesirov, H. Coller, M.L. Loh, J.R. Downing, M.A. Caligiuri, C.D. Bloomfield, and E.S. Lander Science 286 1999 531 537
17. S. Doubet, and P. Albersheim Glycobiology 2 1992 505
18. S. Doubet, K. Bock, D. Smith, A. Darvill, and P. Albersheim Trends Biochem. Sci. 14 1989 475 477
19. K.J. Park, and M. Kanehisa Bioinformatics 19 2003 1656 1663
20. T.S. Furey, N. Cristianini, N. Duffy, D.W. Bednarski, M. Schummer, and D. Haussler Bioinformatics 16 2000 906 914
21. Y.D. Cai, X.J. Liu, X.B. Xu, and K.C. Chou Comput. Chem. 26 2002 293 296
22. C.Z. Cai, W.L. Wang, L.Z. Sun, and Y.Z. Chen Math. Biosci. 185 2003 111 122
23. M.P. Brown, W.N. Grundy, D. Lin, N. Cristianini, C.W. Sugnet, T.S. Furey, M. Ares Jr., and D. Haussler Proc. Natl. Acad. Sci. U.S.A. 97 2000 262 267
24. P. Pavlidis, I. Wapinski, and W.S. Noble Bioinformatics 20 2004 586 587
25. S. Moriwaki, H. Ohba, O. Nakamura, I. Sallay, M. Suzuki, H. Tsubouchi, N. Yamasaki, and K. Itoh J. Hematother. Stem. Cell Res. 9 2000 47 53