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Volumn 70, Issue 5, 2004, Pages 2614-2620

Response of archaeal communities in beach sediments to spilled oil and bioremediation

Author keywords

[No Author keywords available]

Indexed keywords

BIOREMEDIATION; COASTAL ZONES; MICROORGANISMS; OIL SPILLS; RNA;

EID: 2442705751     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.70.5.2614-2620.2004     Document Type: Article
Times cited : (53)

References (37)
  • 2
    • 0028946084 scopus 로고
    • Phylogenetic identification and in situ detection of individual microbial cells without cultivation
    • Amann, R. I., W. Ludwig, and K. H. Schleifer. 1995. Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol. Rev. 59:143-169.
    • (1995) Microbiol. Rev. , vol.59 , pp. 143-169
    • Amann, R.I.1    Ludwig, W.2    Schleifer, K.H.3
  • 3
    • 0015337078 scopus 로고
    • Degradation and mineralization of petroleum in seawater: Limitation by nitrogen and phosphorus
    • Atlas, R. M., and R. Bartha. 1972. Degradation and mineralization of petroleum in seawater: limitation by nitrogen and phosphorus. Biotechnol. Bioeng. 14:309-318.
    • (1972) Biotechnol. Bioeng. , vol.14 , pp. 309-318
    • Atlas, R.M.1    Bartha, R.2
  • 4
    • 0028343555 scopus 로고
    • Remarkable archaeal diversity detected in a Yellowstone National Park hot spring environment
    • Barns, S. M., R. E. Fundyga, M. W. Jeffries, and N. R. Pace. 1994. Remarkable archaeal diversity detected in a Yellowstone National Park hot spring environment. Proc. Natl. Acad. Sci. 91:1609-1613.
    • (1994) Proc. Natl. Acad. Sci. , vol.91 , pp. 1609-1613
    • Barns, S.M.1    Fundyga, R.E.2    Jeffries, M.W.3    Pace, N.R.4
  • 5
    • 0026755238 scopus 로고
    • Archaea in coastal marine environments
    • DeLong, E. F. 1992. Archaea in coastal marine environments. Proc. Natl. Acad. Sci. 89:5685-5689.
    • (1992) Proc. Natl. Acad. Sci. , vol.89 , pp. 5685-5689
    • DeLong, E.F.1
  • 6
    • 0031769609 scopus 로고    scopus 로고
    • Everything in moderation: Archaea as 'non-extremophiles'
    • DeLong, E. F. 1998. Everything in moderation: Archaea as 'non-extremophiles.' Curr. Opin. Genes Dev. 8:649-654.
    • (1998) Curr. Opin. Genes Dev. , vol.8 , pp. 649-654
    • DeLong, E.F.1
  • 7
    • 0028594902 scopus 로고
    • High abundance of Archaea in Antarctic marine picoplankton
    • DeLong, E. F., K. Y. Wu, B. B. Prezelin, and R. V. M. Jovine. 1994. High abundance of Archaea in Antarctic marine picoplankton. Nature 371:695-697.
    • (1994) Nature , vol.371 , pp. 695-697
    • DeLong, E.F.1    Wu, K.Y.2    Prezelin, B.B.3    Jovine, R.V.M.4
  • 8
    • 0032189023 scopus 로고    scopus 로고
    • Microbial diversity in a hydrocarbon- and chlorinated-solvent-contaminated aquifer undergoing intrinsic bioremediation
    • Dojka, M. A., P. Hugenholtz, S. K. Haack, and N. R. Pace. 1998. Microbial diversity in a hydrocarbon- and chlorinated-solvent-contaminated aquifer undergoing intrinsic bioremediation. Appl. Environ. Microbiol. 64:3869-3877.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 3869-3877
    • Dojka, M.A.1    Hugenholtz, P.2    Haack, S.K.3    Pace, N.R.4
  • 9
    • 0000122573 scopus 로고
    • PHYLIP-phylogeny inference package
    • Felsenstein, J. 1989. PHYLIP-phylogeny inference package. Cladistics 5:164-166.
    • (1989) Cladistics , vol.5 , pp. 164-166
    • Felsenstein, J.1
  • 10
    • 0035488974 scopus 로고    scopus 로고
    • Axial differences in community structure of Crenarchaeota and Euryarchaeota in the highly compartmentalized gut of the soil-feeding termite Cubitermes orthognathus
    • Friedrich, M. W., D. Schmitt-Wagner, T. Lueders, and A. Brune. 2001. Axial differences in community structure of Crenarchaeota and Euryarchaeota in the highly compartmentalized gut of the soil-feeding termite Cubitermes orthognathus. Appl. Environ. Microbiol. 67:4880-4890.
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 4880-4890
    • Friedrich, M.W.1    Schmitt-Wagner, D.2    Lueders, T.3    Brune, A.4
  • 11
    • 0026525546 scopus 로고
    • Novel major archae-bacterial group from marine plankton
    • Fuhrman, J. A., K. Mccallum, and A. A. Davis. 1992. Novel major archae-bacterial group from marine plankton. Nature 356:148-149.
    • (1992) Nature , vol.356 , pp. 148-149
    • Fuhrman, J.A.1    Mccallum, K.2    Davis, A.A.3
  • 12
    • 0027336561 scopus 로고
    • Phylogenetic diversity of subsurface marine microbial communities from the Atlantic and Pacific oceans
    • Fuhrman, J. A., K. Mccallum, and A. A. Davis. 1993. Phylogenetic diversity of subsurface marine microbial communities from the Atlantic and Pacific oceans. Appl. Environ. Microbiol. 59:1294-1302.
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 1294-1302
    • Fuhrman, J.A.1    Mccallum, K.2    Davis, A.A.3
  • 13
    • 0000803388 scopus 로고
    • The population frequencies of species and the estimation of the population parameters
    • Good, I. J. 1953. The population frequencies of species and the estimation of the population parameters. Biometrika 40:237-264.
    • (1953) Biometrika , vol.40 , pp. 237-264
    • Good, I.J.1
  • 14
    • 0036001071 scopus 로고    scopus 로고
    • Occurrence and activity of Archaea in aerated activated sludge wastewater treatment plants
    • Gray, N. D., I. P. Miskin, O. Kornilova, T. P. Curtis, and I. M. Head. 2002. Occurrence and activity of Archaea in aerated activated sludge wastewater treatment plants. Environ. Microbiol. 4:158-168.
    • (2002) Environ. Microbiol. , vol.4 , pp. 158-168
    • Gray, N.D.1    Miskin, I.P.2    Kornilova, O.3    Curtis, T.P.4    Head, I.M.5
  • 15
    • 0035487318 scopus 로고    scopus 로고
    • Counting the uncountable: Statistical approaches to estimating microbial diversity
    • Hughes, J. B., J. J. Hellmann, T. H. Ricketts, and B. J. M. Bohannan. 2001. Counting the uncountable: statistical approaches to estimating microbial diversity. Appl. Environ. Microbiol. 67:4399-4406.
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 4399-4406
    • Hughes, J.B.1    Hellmann, J.J.2    Ricketts, T.H.3    Bohannan, B.J.M.4
  • 16
    • 0000732090 scopus 로고
    • Evolution of protein molecules
    • H. N. Munro (ed.), Academic Press, New York, N.Y.
    • Jukes, T. H., and C. R. Cantor. 1969. Evolution of protein molecules, p. 21-132. In H. N. Munro (ed.), Mammalian protein metabolism, vol. 3. Academic Press, New York, N.Y.
    • (1969) Mammalian Protein Metabolism , vol.3 , pp. 21-132
    • Jukes, T.H.1    Cantor, C.R.2
  • 17
    • 0036001072 scopus 로고    scopus 로고
    • Predominant growth of Alcanivorax strains in oil-contaminated and nutrient-supplemented sea water
    • Kasai, Y., H. Kishira, T. Sasaki, K. Syutsubo, K. Watanabe, and S. Harayama. 2002. Predominant growth of Alcanivorax strains in oil-contaminated and nutrient-supplemented sea water. Environ. Microbiol. 4:141-147.
    • (2002) Environ. Microbiol. , vol.4 , pp. 141-147
    • Kasai, Y.1    Kishira, H.2    Sasaki, T.3    Syutsubo, K.4    Watanabe, K.5    Harayama, S.6
  • 18
    • 0035208305 scopus 로고    scopus 로고
    • Molecular detection of marine bacterial populations on beaches contaminated by the Nakhodka tanker oil-spill accident
    • Kasai, Y., H. Kishira, K. Syutsubo, and S. Harayama. 2001. Molecular detection of marine bacterial populations on beaches contaminated by the Nakhodka tanker oil-spill accident. Environ. Microbiol. 3:246-255.
    • (2001) Environ. Microbiol. , vol.3 , pp. 246-255
    • Kasai, Y.1    Kishira, H.2    Syutsubo, K.3    Harayama, S.4
  • 19
    • 0025180428 scopus 로고
    • Microbial degradation of hydrocarbons in the environment
    • Leahy, J. G., and R. R. Colwell. 1990. Microbial degradation of hydrocarbons in the environment. Microbiol. Rev. 54:305-315.
    • (1990) Microbiol. Rev. , vol.54 , pp. 305-315
    • Leahy, J.G.1    Colwell, R.R.2
  • 22
    • 0030620440 scopus 로고    scopus 로고
    • Vertical distribution and phylogenetic characterization of marine planktonic Archaea in the Santa Barbara Channel
    • Massana, R., A. E. Murray, C. M. Preston, and E. F. DeLong. 1997. Vertical distribution and phylogenetic characterization of marine planktonic Archaea in the Santa Barbara Channel. Appl. Environ. Microbiol. 63:50-56.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 50-56
    • Massana, R.1    Murray, A.E.2    Preston, C.M.3    DeLong, E.F.4
  • 23
    • 2142858733 scopus 로고    scopus 로고
    • Spatial analysis of archaeal community structure in grassland soil
    • Nicol, G. W., L. A. Glover, and J. I. Prosser. 2003. Spatial analysis of archaeal community structure in grassland soil. Appl. Environ. Microbiol. 69:7420-7429.
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 7420-7429
    • Nicol, G.W.1    Glover, L.A.2    Prosser, J.I.3
  • 24
    • 0030805150 scopus 로고    scopus 로고
    • Distribution of bacterioplankton in meromictic Lake Saelenvannet, as determined by denaturing gradient gel electrophoresis of PCR-amplified gene fragments coding for 16S rRNA
    • Ovreas, L., L. Forney, F. L. Daae, and V. Torsvik. 1997. Distribution of bacterioplankton in meromictic Lake Saelenvannet, as determined by denaturing gradient gel electrophoresis of PCR-amplified gene fragments coding for 16S rRNA. Appl. Environ. Microbiol. 63:3367-3373.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 3367-3373
    • Ovreas, L.1    Forney, L.2    Daae, F.L.3    Torsvik, V.4
  • 25
    • 0028165833 scopus 로고
    • Quantification of methanogenic groups in anaerobic biological reactors by oligonucleotide probe hybridization
    • Raskin, L., L. K. Poulsen, D. R. Noguera, B. E. Rittmann, and D. A. Stahl. 1994. Quantification of methanogenic groups in anaerobic biological reactors by oligonucleotide probe hybridization. Appl. Environ. Microbiol. 60:1241-1248.
    • (1994) Appl. Environ. Microbiol. , vol.60 , pp. 1241-1248
    • Raskin, L.1    Poulsen, L.K.2    Noguera, D.R.3    Rittmann, B.E.4    Stahl, D.A.5
  • 26
    • 2442643152 scopus 로고    scopus 로고
    • Bacterial community dynamics and hydrocarbon degradation during a field-scale evaluation of bioremediation on a mudflat beach contaminated with buried oil
    • Röling, W. F. M., M. G. Milner, D. M. Jones, F. Fratepietro, R. J. P. Swannell, F. Daniel, and I. M. Head. 2004. Bacterial community dynamics and hydrocarbon degradation during a field-scale evaluation of bioremediation on a mudflat beach contaminated with buried oil. Appl. Environ. Microbiol. 70:2603-2613.
    • (2004) Appl. Environ. Microbiol. , vol.70 , pp. 2603-2613
    • Röling, W.F.M.1    Milner, M.G.2    Jones, D.M.3    Fratepietro, F.4    Swannell, R.J.P.5    Daniel, F.6    Head, I.M.7
  • 27
    • 0036840898 scopus 로고    scopus 로고
    • Robust hydrocarbon degradation and dynamics of bacterial communities during nutrient-enhanced oil spill bioremediation
    • Röling, W. F. M., M. G. Milner, D. M. Jones, K. Lee, F. Daniel, R. J. P. Swannell, and I. M. Head. 2002. Robust hydrocarbon degradation and dynamics of bacterial communities during nutrient-enhanced oil spill bioremediation. Appl. Environ. Microbiol. 68:5537-5548.
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 5537-5548
    • Röling, W.F.M.1    Milner, M.G.2    Jones, D.M.3    Lee, K.4    Daniel, F.5    Swannell, R.J.P.6    Head, I.M.7
  • 28
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou, N., and M. Nei. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 29
    • 0032792809 scopus 로고    scopus 로고
    • Abundance and diversity of Archaea in heavy-metal-contaminated soils
    • Sandaa, R. A., O. Enger, and V. Torsvik. 1999. Abundance and diversity of Archaea in heavy-metal-contaminated soils. Appl. Environ. Microbiol. 65:3293-3297.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 3293-3297
    • Sandaa, R.A.1    Enger, O.2    Torsvik, V.3
  • 31
    • 0028028182 scopus 로고
    • A place for DNA-DNA reassociation and 16S ribosomal-RNA sequence analysis in the present species definition in bacteriology
    • Stackebrandt, E., and B. M. Goebel. 1994. A place for DNA-DNA reassociation and 16S ribosomal-RNA sequence analysis in the present species definition in bacteriology. Int. J. Syst. Bacteriol. 44:846-849.
    • (1994) Int. J. Syst. Bacteriol. , vol.44 , pp. 846-849
    • Stackebrandt, E.1    Goebel, B.M.2
  • 32
    • 0033140453 scopus 로고    scopus 로고
    • Microbial characterization of a JP-4 fuel-contaminated site using a combined lipid biomarker/polymerase chain reaction-denaturing gradient gel electrophoresis (PCR-DGGE)-based approach
    • Stephen, J. R., Y. J. Chang, Y. D. Gan, A. Peacock, S. M. Pfiffner, M. J. Barcelona, D. C. White, and S. J. Macnaughton. 1999. Microbial characterization of a JP-4 fuel-contaminated site using a combined lipid biomarker/polymerase chain reaction-denaturing gradient gel electrophoresis (PCR-DGGE)-based approach. Environ. Microbiol. 1:231-241.
    • (1999) Environ. Microbiol. , vol.1 , pp. 231-241
    • Stephen, J.R.1    Chang, Y.J.2    Gan, Y.D.3    Peacock, A.4    Pfiffner, S.M.5    Barcelona, M.J.6    White, D.C.7    Macnaughton, S.J.8
  • 33
    • 0029973076 scopus 로고    scopus 로고
    • Field evaluations of marine oil spill bioremediation
    • Swannell, R. P. J., K. Lee, and M. McDonagh. 1996. Field evaluations of marine oil spill bioremediation. Microbiol. Rev. 60:342-365.
    • (1996) Microbiol. Rev. , vol.60 , pp. 342-365
    • Swannell, R.P.J.1    Lee, K.2    McDonagh, M.3
  • 34
    • 0028509254 scopus 로고
    • Treecon for windows - A software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment
    • Van de Peer, Y., and R. de Wachter. 1994. Treecon for windows-a software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment. Comput. Applic. Biosci. 10:569-570.
    • (1994) Comput. Applic. Biosci. , vol.10 , pp. 569-570
    • Van De Peer, Y.1    De Wachter, R.2
  • 36
    • 0032868072 scopus 로고    scopus 로고
    • Population structure and phylogenetic characterization of marine benthic archaea in deep-sea sediments
    • Vetriani, C., H. W. Jannasch, B. J. MacGregor, D. A. Stahl, and A. L. Reysenbach. 1999. Population structure and phylogenetic characterization of marine benthic archaea in deep-sea sediments. Appl. Environ. Microbiol. 65:4375-4384.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 4375-4384
    • Vetriani, C.1    Jannasch, H.W.2    MacGregor, B.J.3    Stahl, D.A.4    Reysenbach, A.L.5
  • 37
    • 0036322440 scopus 로고    scopus 로고
    • Diversity, abundance, and activity of archaeal populations in oil-contaminated ground-water accumulated at the bottom of an underground crude oil storage cavity
    • Watanabe, K., Y. Kodama, N. Hamamura, and N. Kaku. 2002. Diversity, abundance, and activity of archaeal populations in oil-contaminated ground-water accumulated at the bottom of an underground crude oil storage cavity. Appl. Environ. Microbiol. 68:3899-3907.
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 3899-3907
    • Watanabe, K.1    Kodama, Y.2    Hamamura, N.3    Kaku, N.4


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