-
1
-
-
33845281067
-
Design of a 4-helix bundle protein: Synthesis of peptides which self-associate into a helical protein
-
Ho, S.P. & DeGrado, W.F. (1987) Design of a 4-helix bundle protein: synthesis of peptides which self-associate into a helical protein. J. Am. Chem. Soc. 109, 6751-6758.
-
(1987)
J. Am. Chem. Soc.
, vol.109
, pp. 6751-6758
-
-
Ho, S.P.1
DeGrado, W.F.2
-
2
-
-
0025040232
-
De novo design, expression, and characterization of Felix: A four-helix bundle protein of native-like sequence
-
Hecht, M.H., Richardson, J.S., Richardson, D.C. & Ogden, R.C. (1990) De novo design, expression, and characterization of Felix: a four-helix bundle protein of native-like sequence. Science 249, 884-891.
-
(1990)
Science
, vol.249
, pp. 884-891
-
-
Hecht, M.H.1
Richardson, J.S.2
Richardson, D.C.3
Ogden, R.C.4
-
3
-
-
0027177971
-
Metal ion-dependent modulation of the dynamics of a designed protein
-
Handel, T.M., Williams, SA. & DeGrado, W.F. (1993) Metal ion-dependent modulation of the dynamics of a designed protein. Science 261, 879-885.
-
(1993)
Science
, vol.261
, pp. 879-885
-
-
Handel, T.M.1
Williams, S.A.2
DeGrado, W.F.3
-
4
-
-
0021719074
-
Synthesis of a model protein of defined secondary and quaternary structure. Effect of chain length on the stabilization and formation of two-stranded α-helical coiled-coils
-
Lau, S.Y.M., Taneja, A.K. & Hodges, R.S. (1984) Synthesis of a model protein of defined secondary and quaternary structure. Effect of chain length on the stabilization and formation of two-stranded α-helical coiled-coils. J. Biol. Chem. 259, 13 253-13 261.
-
(1984)
J. Biol. Chem.
, vol.259
, pp. 13253-13261
-
-
Lau, S.Y.M.1
Taneja, A.K.2
Hodges, R.S.3
-
5
-
-
0025222978
-
A thermodynamic scale for the helix-forming tendencies of the commonly occurring amino acids
-
O'Neil, K.T. & DeGrado, W.F. (1990) A thermodynamic scale for the helix-forming tendencies of the commonly occurring amino acids. Science 250, 646-651.
-
(1990)
Science
, vol.250
, pp. 646-651
-
-
O'Neil, K.T.1
DeGrado, W.F.2
-
6
-
-
0027756896
-
A switch between two-, three-, and four-stranded coiled coils in GCN4 leucine zipper mutants
-
Harbury, P.B., Zhang, T., Kim, P.S. & Alber, T. (1993) A switch between two-, three-, and four-stranded coiled coils in GCN4 leucine zipper mutants. Science 262, 1401-1407.
-
(1993)
Science
, vol.262
, pp. 1401-1407
-
-
Harbury, P.B.1
Zhang, T.2
Kim, P.S.3
Alber, T.4
-
7
-
-
0028587717
-
De novo design, synthesis, and characterization of a β-sandwich protein
-
Quin, T.P., Tweedy, N.B., Williams, R.W., Richardson, J.S. & Richardson, D.C. (1994) De novo design, synthesis, and characterization of a β-sandwich protein. Proc. Natl. Acad. Sci. USA 91, 8747-8751.
-
(1994)
Proc. Natl. Acad. Sci. USA
, vol.91
, pp. 8747-8751
-
-
Quin, T.P.1
Tweedy, N.B.2
Williams, R.W.3
Richardson, J.S.4
Richardson, D.C.5
-
8
-
-
0001117058
-
Construction and design of β-sheets
-
Smith, C.K. & Regan, L. (1997) Construction and design of β-sheets. Acc. of Chem. Res. 30, 153-161.
-
(1997)
Acc. of Chem. Res.
, vol.30
, pp. 153-161
-
-
Smith, C.K.1
Regan, L.2
-
9
-
-
0030941296
-
NMR structure of a de novo designed, peptide 33mer with two distinct, compact beta-sheet folds
-
Ilyina, E., Roongta, V. & Mayo, K.H. (1997) NMR structure of a de novo designed, peptide 33mer with two distinct, compact beta-sheet folds. Biochemistry 36, 5245-5250.
-
(1997)
Biochemistry
, vol.36
, pp. 5245-5250
-
-
Ilyina, E.1
Roongta, V.2
Mayo, K.H.3
-
10
-
-
2642670311
-
Design of a 20-amino acid, three-stranded β-sheet protein
-
Kortemme, T., Ramírez-Alvarado, M. & Serrano, L. (1998) Design of a 20-amino acid, three-stranded β-sheet protein. Science 281, 253-256.
-
(1998)
Science
, vol.281
, pp. 253-256
-
-
Kortemme, T.1
Ramírez-Alvarado, M.2
Serrano, L.3
-
11
-
-
0032246263
-
Minimal model systems for β sheet secondary structure in proteins
-
Gellman, S.H. (1998) Minimal model systems for β sheet secondary structure in proteins. Curr. Opinion in Chem. Biol. 2, 717-725.
-
(1998)
Curr. Opinion in Chem. Biol.
, vol.2
, pp. 717-725
-
-
Gellman, S.H.1
-
12
-
-
0025359825
-
Synthesis, purification and initial structural characterization of octarellin, a de novo polypeptide modelled on the α/β-barrel proteins
-
Goraj, K., Renard, A. & Martial, J.A. (1990) Synthesis, purification and initial structural characterization of octarellin, a de novo polypeptide modelled on the α/β-barrel proteins. Protein Engng. 3, 259-266.
-
(1990)
Protein Engng.
, vol.3
, pp. 259-266
-
-
Goraj, K.1
Renard, A.2
Martial, J.A.3
-
13
-
-
0025990386
-
Spectroscopic investigation of structure in octarellin (a de novo protein designed to adopt the α/β-barrel packing)
-
Beauregard, M., Goraj, K., Goffin, V., Heremans, K., Goormaghtigh, E., Ruysschaert, J.-M. & Martial, J.A. (1991) Spectroscopic investigation of structure in octarellin (a de novo protein designed to adopt the α/β-barrel packing). Protein Engng. 4, 745-749.
-
(1991)
Protein Engng.
, vol.4
, pp. 745-749
-
-
Beauregard, M.1
Goraj, K.2
Goffin, V.3
Heremans, K.4
Goormaghtigh, E.5
Ruysschaert, J.-M.6
Martial, J.A.7
-
14
-
-
0028295628
-
Characteristics of a de novo designed protein
-
Tanaka, T., Kimura, H., Hayashi, M., Fujiyoshi, Y., Fukuhara, K. & Nakamura, H. (1994) Characteristics of a de novo designed protein. Protein Sci. 3, 419-427.
-
(1994)
Protein Sci.
, vol.3
, pp. 419-427
-
-
Tanaka, T.1
Kimura, H.2
Hayashi, M.3
Fujiyoshi, Y.4
Fukuhara, K.5
Nakamura, H.6
-
15
-
-
0028129583
-
Cooperative deformation of a de novo designed protein
-
Tanaka, T., Kuroda, Y., Kimura, H., Kidokoro, S. & Nakamura, H. (1994) Cooperative deformation of a de novo designed protein. Protein Engng. 7, 969-976.
-
(1994)
Protein Engng.
, vol.7
, pp. 969-976
-
-
Tanaka, T.1
Kuroda, Y.2
Kimura, H.3
Kidokoro, S.4
Nakamura, H.5
-
16
-
-
0000933784
-
A consensus zinc finger peptide: Design, high-affinity metal binding, a pH-dependent structure, and a His to Cys sequence variant
-
Krizek, B.A., Amann, B.T., Kilfoil, V.J., Merkle, D.L. & Berg, J.M. (1991) A consensus zinc finger peptide: design, high-affinity metal binding, a pH-dependent structure, and a His to Cys sequence variant. J. Am. Chem. Soc. 113, 4518-4523.
-
(1991)
J. Am. Chem. Soc.
, vol.113
, pp. 4518-4523
-
-
Krizek, B.A.1
Amann, B.T.2
Kilfoil, V.J.3
Merkle, D.L.4
Berg, J.M.5
-
17
-
-
0026695272
-
Metal binding and folding properties of a minimalist Cys2His2 zinc finger peptide
-
Michael, S.F., Kilfoil, V.J., Schmidt, M.H., Amann, B.T. & Berg, J.M. (1992) Metal binding and folding properties of a minimalist Cys2His2 zinc finger peptide. Proc. Natl. Acad. Sci. USA 89, 4796-4800.
-
(1992)
Proc. Natl. Acad. Sci. USA
, vol.89
, pp. 4796-4800
-
-
Michael, S.F.1
Kilfoil, V.J.2
Schmidt, M.H.3
Amann, B.T.4
Berg, J.M.5
-
18
-
-
0026019625
-
Structural basis for the 3′-5′ exonuclease activity of Escherichia coli DNA polymerase I: A two-metal ion mechanism
-
Beese, L.S. and Steitz, T.A. (1991) Structural basis for the 3′-5′ exonuclease activity of Escherichia coli DNA polymerase I: a two-metal ion mechanism. EMBO J. 10, 25-33.
-
(1991)
EMBO J.
, vol.10
, pp. 25-33
-
-
Beese, L.S.1
Steitz, T.A.2
-
19
-
-
0036525722
-
Construction of heme enzymes: Four approaches
-
Watanabe, Y. (2002) Construction of heme enzymes: four approaches. Curr. Opinion in Chem. Biol. 6, 208-216.
-
(2002)
Curr. Opinion in Chem. Biol.
, vol.6
, pp. 208-216
-
-
Watanabe, Y.1
-
20
-
-
7744236144
-
Multicopper oxidases and oxygenases
-
Solomon, E.I., Sundaram, U.M. & Machonkin, T.E. (1996) Multicopper oxidases and oxygenases. Chem. Rev. 96, 2563-2605.
-
(1996)
Chem. Rev.
, vol.96
, pp. 2563-2605
-
-
Solomon, E.I.1
Sundaram, U.M.2
Machonkin, T.E.3
-
21
-
-
0028918916
-
DNA-bend modulation in a repressor-to-activator switching mechanism
-
Ansari, A.Z., Bradner, J.E. & O'Halloran, T.V. (1995) DNA-bend modulation in a repressor-to-activator switching mechanism. Nature 374, 371-375.
-
(1995)
Nature
, vol.374
, pp. 371-375
-
-
Ansari, A.Z.1
Bradner, J.E.2
O'Halloran, T.V.3
-
22
-
-
0032581662
-
Structure of the metal-ion-activated diphtheria toxin repressor/tox operator complex
-
White, A., Ding, X., vanderSpek, J.C., Murphy, J.R. & Ringe, D. (1998) Structure of the metal-ion-activated diphtheria toxin repressor/tox operator complex. Nature 394, 502-506.
-
(1998)
Nature
, vol.394
, pp. 502-506
-
-
White, A.1
Ding, X.2
VanderSpek, J.C.3
Murphy, J.R.4
Ringe, D.5
-
23
-
-
0025272940
-
Alpha-helical coiled coils and bundles: How to design an alpha-helical protein
-
Cohen, C. & Parry, D.A. (1990) Alpha-helical coiled coils and bundles: how to design an alpha-helical protein. Proteins 4, 1-15.
-
(1990)
Proteins
, vol.4
, pp. 1-15
-
-
Cohen, C.1
Parry, D.A.2
-
24
-
-
0030271515
-
Coiled coils: New structures and new functions
-
Lupas, A. (1996) Coiled coils: new structures and new functions. Trends Biochem. Sci. 21, 375-382.
-
(1996)
Trends Biochem. Sci.
, vol.21
, pp. 375-382
-
-
Lupas, A.1
-
25
-
-
0032561793
-
Metal ion induced self-assembly of a designed peptide into a triple-stranded α-helical bundle: A novel metal binding site in the hydrophobic core
-
Suzuki, K., Hiroaki, H., Kohda, D., Nakamura, H. & Tanaka, T. (1998) Metal ion induced self-assembly of a designed peptide into a triple-stranded α-helical bundle: a novel metal binding site in the hydrophobic core. J. Am. Chem. Soc. 120, 13 008-13 015.
-
(1998)
J. Am. Chem. Soc.
, vol.120
, pp. 13008-13015
-
-
Suzuki, K.1
Hiroaki, H.2
Kohda, D.3
Nakamura, H.4
Tanaka, T.5
-
26
-
-
0034462929
-
Engineering of the hydrophobic core of an alpha-helical coiled coil
-
Kiyokawa, T., Kanaori, K., Tajima, K. & Tanaka, T. (2000) Engineering of the hydrophobic core of an alpha-helical coiled coil. Biopolymers 55, 407-414.
-
(2000)
Biopolymers
, vol.55
, pp. 407-414
-
-
Kiyokawa, T.1
Kanaori, K.2
Tajima, K.3
Tanaka, T.4
-
27
-
-
0033853033
-
Soft metal ions, Cd(II) and Hg(II), induce triple-stranded α-helical assembly and folding of a de novo designed peptide in their trigonal geometries
-
Li, X., Suzuki, K., Kanaori, K., Tajima, K., Kashiwada, A., Hiroaki, H., Kohda, D. & Tanaka, T. (2000) Soft metal ions, Cd(II) and Hg(II), induce triple-stranded α-helical assembly and folding of a de novo designed peptide in their trigonal geometries. Protein Sci. 9, 1327-1333.
-
(2000)
Protein Sci.
, vol.9
, pp. 1327-1333
-
-
Li, X.1
Suzuki, K.2
Kanaori, K.3
Tajima, K.4
Kashiwada, A.5
Hiroaki, H.6
Kohda, D.7
Tanaka, T.8
-
28
-
-
0025764258
-
Straight-chain non-polar amino acids are good helix-formers in water
-
Padmanabhan, S. & Baldwin, R.L. (1991) Straight-chain non-polar amino acids are good helix-formers in water. J. Mol. Biol. 219, 135-137.
-
(1991)
J. Mol. Biol.
, vol.219
, pp. 135-137
-
-
Padmanabhan, S.1
Baldwin, R.L.2
-
29
-
-
0003512158
-
-
Reinhold Publishing Corp., New York
-
Cohn, E.J. & Edsall, J.T. (1943) Proteins, Amino Acids and Peptides as Ions and Dipolar Ions. Reinhold Publishing Corp., New York, pp. 370-381.
-
(1943)
Proteins, Amino Acids and Peptides As Ions and Dipolar Ions
, pp. 370-381
-
-
Cohn, E.J.1
Edsall, J.T.2
-
30
-
-
0031793228
-
An isoleucine zipper peptide forms a native-like triple-stranded coiled coil in solution
-
Suzuki, K., Hiroaki, H., Kohda, D. & Tanaka, T. (1998) An isoleucine zipper peptide forms a native-like triple-stranded coiled coil in solution. Protein Engng 11, 1051-1055.
-
(1998)
Protein Engng.
, vol.11
, pp. 1051-1055
-
-
Suzuki, K.1
Hiroaki, H.2
Kohda, D.3
Tanaka, T.4
-
31
-
-
0020478479
-
A study of the electron paramagnetic resonance properties of single monoclinic crystals of bovine superoxide dismutase
-
Lieberman, R.A., Sands, R.H. & Fee, J.A. (1982) A study of the electron paramagnetic resonance properties of single monoclinic crystals of bovine superoxide dismutase. J. Biol. Chem. 257, 336-348.
-
(1982)
J. Biol. Chem.
, vol.257
, pp. 336-348
-
-
Lieberman, R.A.1
Sands, R.H.2
Fee, J.A.3
-
32
-
-
0016369980
-
Structural implications derived from the analysis of EPR spectra of natural and artificial copper proteins
-
Peisach, J. & Blumberg, W.E. (1974) Structural implications derived from the analysis of EPR spectra of natural and artificial copper proteins. Arch. Biochem. Biophys. 165, 691-724.
-
(1974)
Arch. Biochem. Biophys.
, vol.165
, pp. 691-724
-
-
Peisach, J.1
Blumberg, W.E.2
-
33
-
-
0025644594
-
A tetrahedral zinc(II)-binding site introduced into a designed protein
-
Regan, L. & Clarke, N.D. (1990) A tetrahedral zinc(II)-binding site introduced into a designed protein. Biochemistry 29, 10 878-10 883.
-
(1990)
Biochemistry
, vol.29
, pp. 10878-10883
-
-
Regan, L.1
Clarke, N.D.2
-
34
-
-
0029016430
-
Protein design: Novel metal-binding sites
-
Regan, L. (1995) Protein design: novel metal-binding sites. Trends Biochem. Sci. 20, 280-285.
-
(1995)
Trends Biochem. Sci.
, vol.20
, pp. 280-285
-
-
Regan, L.1
-
36
-
-
0032542575
-
Metal ion induced folding of a de novo designed coiled-coil peptide
-
Kohn, W.D., Kay, C.M., Sykes, B.D. & Hodges, R.S. (1998) Metal ion induced folding of a de novo designed coiled-coil peptide. J. Am. Chem. Soc. 120, 1124-1132.
-
(1998)
J. Am. Chem. Soc.
, vol.120
, pp. 1124-1132
-
-
Kohn, W.D.1
Kay, C.M.2
Sykes, B.D.3
Hodges, R.S.4
-
37
-
-
0027471542
-
A designed metal-binding protein with a novel fold
-
Pessi, A., Bianchi, E., Crameri, A., Venturini, S., Tramontano, A. & Sollazzo, M. (1993) A designed metal-binding protein with a novel fold. Nature 362, 367-369.
-
(1993)
Nature
, vol.362
, pp. 367-369
-
-
Pessi, A.1
Bianchi, E.2
Crameri, A.3
Venturini, S.4
Tramontano, A.5
Sollazzo, M.6
-
38
-
-
0030874443
-
De novo design of mercury-binding two- and three-helical bundles
-
Dieckmann, G.R., McRorie, D.K., Tierney, D.L., Utschig, L.M., Singer, C.P., O'Halloran, T.V., Penner-Hahn, J.E., DeGrado, W.F. & Pecoraro, V.L. (1997) De novo design of mercury-binding two- and three-helical bundles. J. Am. Chem. Soc. 119, 6195-6196.
-
(1997)
J. Am. Chem. Soc.
, vol.119
, pp. 6195-6196
-
-
Dieckmann, G.R.1
McRorie, D.K.2
Tierney, D.L.3
Utschig, L.M.4
Singer, C.P.5
O'Halloran, T.V.6
Penner-Hahn, J.E.7
DeGrado, W.F.8
Pecoraro, V.L.9
-
39
-
-
0032584776
-
The role of protonation and metal chelation preferences in defining the properties of mercury-binding coiled coils
-
Dieckmann, G.R., McRorie, D.K., Lear, J.D., Sharp, K.A., DeGrado, W.F. & Pecoraro, V.L. (1998) The role of protonation and metal chelation preferences in defining the properties of mercury-binding coiled coils. J. Mol. Biol. 280, 897-912.
-
(1998)
J. Mol. Biol.
, vol.280
, pp. 897-912
-
-
Dieckmann, G.R.1
McRorie, D.K.2
Lear, J.D.3
Sharp, K.A.4
DeGrado, W.F.5
Pecoraro, V.L.6
-
40
-
-
0034612192
-
Retrostructural analysis of metalloproteins: Application to the design of a minimal model for diiron proteins
-
Lombardi, A., Summa, C.M., Geremia, S., Randaccio, L., Pavone, V. & De Grado, W.F. (2000) Retrostructural analysis of metalloproteins: application to the design of a minimal model for diiron proteins. Proc. Natl. Acad. Sci. USA 97, 6298-6305.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 6298-6305
-
-
Lombardi, A.1
Summa, C.M.2
Geremia, S.3
Randaccio, L.4
Pavone, V.5
De Grado, W.F.6
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