FTIR transmission and photoacoustic spectroscopy for the statistical identification of bacteria

Proceedings of SPIE - The International Society for Optical Engineering

Volumn 5269, Issue , 2004, Pages 172-182

  Foster, Nancy S ^a   Valentine, Nancy B ^a   Thompson, Sandra E ^a   Johnson, Timothy J ^a   Amonette, James E ^a  

^a PACIFIC NORTHWEST NATIONAL LABORATORY   (United States)

Author keywords

Bacillus; Bacteria; Chemometrics; Escherichia; FTIR; Photoacoustic; Pseudomonas; Spectroscopy; Spores

Indexed keywords

BACILLUS; CHEMOMETRICS; PSEUDOMONAS; SPORES;

ANTIGENS; FOURIER TRANSFORM INFRARED SPECTROSCOPY; MASS SPECTROMETRY; PHOTOACOUSTIC EFFECT; SPURIOUS SIGNAL NOISE; TOXICITY;

ESCHERICHIA COLI;

EID: 2442543212     PISSN: 0277786X     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1117/12.519199     Document Type: Conference Paper

References (27)

1. J. Chen, R. Johnson, and M. Griffiths, "Detection of Verotoxigenic Escherichia Coli by Magnetic Capture-Hybridization PCR", Appl. Envir. Microbiol., 64, 147-152, 1998.
2. D. F. Waller, and S. A. Ogata, "Quantitative Immunocapture PCR Assay for Detection of Campylobacter Jejuni in Foods", Appl. Emir. Microbiol., 66, 4115-4118, 2000.
3. R. D. Holland, J. G. Wilkes, F. Rafii, J. B. Sutherland, C. C. Persons, and K. J. Voorhees, "Rapid Identification by Mass Spectrometry and Protein Database Searches", Rapid Comm. Mass Spec., 10, 1227-1232, 1996.
4. I. Krishnamurthy, and P. L. Ross, "Rapid Identification of Bacteria by Direct Matrix-Assisted Laser Desorption/Ionization Mass Spectrometric Analysis of Whole Cells", Rapid Commun. Mass Spectrom., 10, 1992-1996, 1996.
5. K. J. Welham, M. A. Domin, D. E. Scannell, E. Cohen, and D. S. Ashton, "The Characterization of Micro-Organisms by Matrix-Assisted Laser Desorption/Ionization Time-of-Flight Mass Spectrometry", Rapid Commun Mass Spectrom. 1998; 12(4):176-80, 12, 176-180, 1998.
6. K. J. Welham, M. A. Domin, D. E. Scannell, E. Cohen, and D. S. Ashton, "The Characterization of Micro-Organisms by Matrix-Assisted Laser Desorption/Ionization Time-of-Flight Mass Spectrometry", Rapid Commun Mass Spectrom. 1998; 12(4):176-80, 12, 176-180, 1998.
7. P. A. Demirev, Y.-P. Ho, V. Ryzhov, and C. Fenselau, "Microorganism Identification by Mass Spectrometry and Protein Database Searches", Anal. Chem., 71, 2732-2738, 1999.
8. K. L. Wahl, S. C. Wunschel, K. H. Jarman, N. B. Valentine, C. E. Petersen, M. T. Kingsley, K. A. Zartolas, and A. J. Saenz, "Analysis of Microbial Mixtures by Matrix-Assisted Laser Desorption/Ionization Time-of-Flight Mass Spectrometry", Anal. Chem, 74, 6191-6199, 2002.
9. D. Naumann, D. Helm, and H. Labischinski, "Microbiological Characterizations by FT-IR Spectroscopy", Nature, 351, 81-82, 1991.
10. N. S. Foster, S. Thompson, N. B. Valentine, J. E. Amonette, and T. J. Johnson, "Identification of Sporulated and Vegetative Bacteria Using Statistical Analysis of Fourier Transform Mid-Infrared Transmission Data", App. Spect., in press, 2003.
11. Murray, P.R, Manual of Clinical Microbiology; ASM Press: Washington, DC, 1999.
12. Anonymous In New York Times; Late Edition - Final ed.: New York, 2002; p 10.
13. J. Schlundt, "Emerging Food-Borne Pathogens", Biomed. Environ. Sci., 14, 44-52, 2001.
14. Anonymous In New York Times; Late Edition - Final ed.: New York, 2002; p 15.
15. J. M. Daisey, W. J. Angell, and M. G. Apte, "Indoor Air Quality, Ventilation and Health Symptoms in Schools: An Analysis of Existing Information", Indoor Air, 13, 53-64, 2003.
16. M. A. Scharfenaker, "Ontario on Fast Track to Drinking Water Quality Management", J. Am. Water Works Assoc., 94, 14, 2002.
17. K. T. Chen, Chen C.J, and J. P. Chiu, "A School Waterborne Outbreak Involving Both Shigella Sonnei and Entamoeba Histolytica", J. Environ. Health, 64, 9-13, 2001.
18. S. Thompson, N. S. Foster, T. J. Johnson, N. B. Valentine, and J. E. Amonette, "Identification of Bacterial Spores Using Statistical Analysis of Fourier Transform Infrared Photoacoustic Spectroscopy Data", Appl. Spect., 57, 893-899, 2003.
19. T. J. Johnson, R. L. Sams, T. A. Blake, S. W. Sharpe, and P. M. Chu, "Removing Aperture-Induced Artifacts from Fourier Transform Infrared Intensity Values", Applied Optics, 41, 2831-2839, 2002.
20. D. Fritze, and R. Pukall, "Reclassification of Bioindicator Strains Bacillus Subtilis Dsm 675 and Bacillus Subtilis Dsm 2277 as Bacillus Atrophaeus", Int. J. Sys. Evol. Microbiol., 51, 35-37, 2001.
21. D. Naumann, C. P. Schultz, and D. Helm In Infrared Spectroscopy of Biomolecules; Mantsch, H. H. Chapman, D., Eds.; Wiley-Liss, Inc., 1996; pp 279-310.
22. R. Goodacre, E. Timmins, R. Burton, N. Kaderbhai, A. M. Woodward, D. B. Kell, and P. J. Rooney, "Rapid Identification of Urinary Tract Infection Bacteria Using Hyperspectral Whole-Organism Fingerprinting and Artificial Neural Networks", Microbiology, 144, 1157-1170, 1998.
23. L.-P. Choo-Smith, K. Maquelin, T. van Vreeswijk, H. A. Bruining, G. J. Puppels, N. A. Ngo Thi, C. Kirschner, D. Naumann, D. Ami, A. M. Villa, F. Orsini, S. M. Doglia, H. Lamfarraj, G. D. Sockalingum, M. Manfait, P. Allouch, and H. P. Endtz, "Investigating Microbial (Micro)Colony Heterogeneity by Vibrational Spectroscopy", Appl. Envir. Microbiol., 67, 1461-1469, 2001.
24. S. H. Beattie, C. Holt, D. Hirst, and A. G. Williams, "Discrimination among Bacillus Cereus, B. Mycoides, and B. Thuringiensis and Some Other Species of the Genus Bacillus by Fourier Transform Infrared Spectroscopy", FEMS Microbiol. Lett., 164, 201-206, 1998.
25. H. Haag, H. U. Gremlich, R. Bergmann, and J. J. Sanglier, "Characterization and Identification of Actinomycetes by FTIR Spectroscopy", J. Microbio. Methods, 27, 157-163, 1996.
26. M. C. Curk, F. Peladan, and J. C. Hubert, "Fourier-Transform Infrared (FTIR) Spectroscopy for Identifying Lactobacillus Species", FEMS Microbiol. Lett., 123, 241-248, 1994.
27. S. F. Lin, H. Schraft, and M. W. Griffiths, "Identification of Bacillus Cereus by Fourier Transform Infrared Spectroscopy (FTIR)", J. Food Protection, 61, 921-923, 1998.