Hydrogen-Deuterium Exchange in Membrane Proteins Monitored by IR Spectroscopy: A New Tool to Resolve Protein Structure and Dynamics

Biopolymers

Volumn 74, Issue 1-2, 2004, Pages 19-26

  Vigano, C ^a   Smeyers, M ^a   Raussens, V ^a   Scheirlinckx, F ^a   Ruysschaert, J M ^a   Goormaghtigh, E ^a  

^a FREE UNIVERSITY OF BRUSSELS   (Belgium)

Author keywords

Amide proton; Attenuated total reflection; Fourier transform infrared; Hydrogen deuterium exchange; Membrane proteins

Indexed keywords

BIOLOGICAL MEMBRANES; CATALYST ACTIVITY; CONFORMATIONS; DEUTERIUM; HYDROGEN; INFRARED SPECTROSCOPY; PROTEINS;

CONFORMATIONAL CHANGES; EXCHANGE KINETICS; PROTEIN STRUCTURE;

BIOPOLYMERS;

AMIDE; DEUTERIUM; HYDROGEN; HYDROGEN POTASSIUM ADENOSINE TRIPHOSPHATASE; MEMBRANE PROTEIN; PROTON;

ANIMAL CELL; CATALYSIS; CONFERENCE PAPER; CONTROLLED STUDY; DYNAMICS; INFRARED SPECTROSCOPY; NONHUMAN; PROTEIN CONFORMATION; PROTEIN DOMAIN; PROTEIN MODIFICATION; PROTEIN PROTEIN INTERACTION; PROTEIN SECONDARY STRUCTURE; PROTEIN STRUCTURE; PROTEIN TERTIARY STRUCTURE; STRUCTURE ANALYSIS;

ADENOSINE TRIPHOSPHATASES; ADENOSINE TRIPHOSPHATE; CALORIMETRY; CATALYSIS; CELL MEMBRANE; DEUTERIUM; H(+)-K(+)-EXCHANGING ATPASE; HYDROGEN; KINETICS; MODELS, CHEMICAL; MODELS, STATISTICAL; NORMAL DISTRIBUTION; PHOSPHORYLATION; PROTEIN BINDING; PROTEIN CONFORMATION; PROTEIN STRUCTURE, TERTIARY; PROTONS; SPECTROPHOTOMETRY, INFRARED; SPECTROSCOPY, FOURIER TRANSFORM INFRARED; STOMACH; TIME FACTORS; WATER;

EID: 2442422001     PISSN: 00063525     EISSN: None     Source Type: Journal    
DOI: 10.1002/bip.20035     Document Type: Conference Paper

References (44)

1. Gregory, R. B.; Lumry, R. Biopolymers 1985, 24, 301-326.
2. Knox, D. G.; Rosenberg, A. Biopolymers 1980, 19, 1049-1068.
3. Englander, S. W.; Kallenbach, N. R. Q Rev Biophys 1984, 16, 521-655.
4. Kim, P. S. Methods Enzymol 1986, 131, 136-156.
5. Heimburg, T.; Marsh, D. Biophys J 1993, 65, 2408-2417.
6. Meskers, S.; Ruysschaert, J. M.; Goormaghtigh, E. J Am Chem Soc 1999, 121, 5115-5122.
7. Raussens, V.; Narayanaswami, V.; Goormaghtigh, E.; Ryan, R. O.; Ruysschaert, J. M. J Biol Chem 1996, 271, 23089-23095.
8. Saba, R. I.; Ruysschaert, J. M.; Herchuelz, A.; Goormaghtigh, E. J Biol Chem 1999, 274, 15510-15518.
9. Sonveaux, N.; Shapiro, A. B.; Goormaghtigh, E.; Ling, V.; Ruysschaert, J. M. J Biol Chem 1996, 271, 24617-24624.
10. Sturgis, J.; Robert, B.; Goormaghtigh, E. Biophys J 1998, 74, 988-994.
11. de-Jongh, H. H.; Goormaghtigh, E.; Ruysschaert, J. M. Biochemistry 1995, 34, 172-179.
12. Baello, B. I.; Pancoska, P.; Keiderling, T. A. Anal Biochem 2000, 280, 46-57.
13. Tatulian, S. A.; Chen, B. W.; Li, J. H.; Negash, S.; Middaugh, C. R.; Bigelow, D. J.; Squier, T. C. Biochemistry 2002, 41, 741-751.
14. Scheirlinckx, F.; Buchet, R.; Ruysschaert, J. M.; Goormaghtigh, E. Eur J Biochem 2001, 268, 3644-3653.
15. Vigneron, L.; Ruysschaert, J. M.; Goormaghtigh, E. J Biol Chem 1995, 270, 17685-17696.
16. Goormaghtigh, E.; Vigneron, L.; Scarborough, G. A.; Ruysschaert, J. M. J Biol Chem 1994, 269, 27409-27413.
17. Baenziger, J. E.; Methot, N. J Biol Chem 1995, 270, 29129-29137.
18. Grimard, V.; Vigano, C.; Margolles, A.; Wattiez, R.; van-Veen, H. W.; Konings, W. N.; Ruysschaert, J. M.; Goormaghtigh, E. Biochemistry 2001, 40, 11876-11886.
19. Reuben, M. A.; Lasater, L. S.; Sachs, G. Proc Natl Acad Sci USA 1990, 87, 6767-6771.
20. Shull, G. E.; Lingrel, J. B. J Biol Chem 1986, 261, 16788-16791.
21. Raussens, V.; Ruysschaert, J. M.; Goormaghtigh, E. J Biol Chem 1997, 272, 262-270.
22. Toyoshima, C.; Nakasako, M.; Nomura, H.; Ogawa, H. Nature 2000, 405, 647-655.
23. Jackson, R. J.; Mendlein, J.; Sachs, G. Biochim Biophys Acta 1983, 731, 9-15.
24. Faller, L. D.; Diaz, R. A.; Scheiner, B. G.; Farley, R. A. Biochemistry 1991, 30, 3503-3510.
25. Baeyens, N.; Wattiez, R.; Raussens, V.; Ruysschaert, J. M.; Goormaghtigh, E. Eur J Biochem 2001, 268, 5135-5141.
26. Gasset, M.; Laynez, J.; Menendez, M.; Raussens, V.; Goormaghtigh, E. J Biol Chem 1997, 272, 1608-1614.
27. Bechinger, B.; Ruysschaert, J. M.; Goormaghtigh, E. Biophys J 1999, 76, 552-563.
28. Soumarmon, A.; Abastado, M.; Bonfils, S.; Lewin, M. J. J Biol Chem M. J. 1980, 255, 11682-11687.
29. Stanton, M. G. Anal Biochem 1968, 22, 27-34.
30. Krimm, S.; Bandekar, J. Adv Protein Chem 1986, 38, 181-364.
31. Goormaghtigh, E.; Ruysschaert, J. M. Spectrochim Acta 1994, 50A, 2137-2144.
32. Venyaminov, S. Y.; Kalnin, N. N. Biopolymers 1991, 30, 1243-1257.
33. Chirgadze, Y. N.; Fedorov, O. V.; Trushina, N. P. Biopolymers 1975, 14, 679-694.
34. Goormaghtigh, E.; Cabiaux, V.; Ruysschaert, J. M. Subcell Biochem 1994, 23, 329-362.
35. Barth, A. Prog Biophys Mol Biol 2000, 74, 141-173.
36. Barth, A.; Zscherp, C. Q Rev Biophys 2002, 35, 369-430.
37. Goormaghtigh, E.; de-Jongh, H. H.; Ruysschaert, J. M. Appl Spectrosc 1996, 50, 1519-1527.
38. de-Jongh, H. H.; Goormaghtigh, E.; Ruysschaert, J. M. Biochemistry 1997, 36, 13593-13602.
39. Chirgadze, Y. N.; Shestopalov, B. V.; Venyaminov, S. Y. Biopolymers 1973, 12, 133-1351.
40. Chirgadze, Y. N.; Brazhnikov, E. V.Biopolymers 1974, 13, 1701-1712.
41. Venyaminov, S. Y.; Kalnin, N. N. Biopolymers 1990, 30, 1259-1271.
42. Goormaghtigh, E.; Raussens, V.; Ruysschaert, J. M. Biochim Biophys Acta 1999, 1422, 105-185.
43. Knox, D. G.; Rosenberg, A. Biopolymers 1980, 19, 1049-1068.
44. Provencher, S. W.; Dovi, V. G. J Biochem Biophys Methods 1979, 1, 313-318.