Towards a molecular diagnosis of invasive aspergillosis and disseminated candidosis

FEMS Immunology and Medical Microbiology

Volumn 45, Issue 3, 2005, Pages 361-368

  Bretagne, Stéphane ^a,b   Costa, Jean Marc ^a,c  

^a HENRI MONDOR HOSPITAL   (France)

^b INSTITUT PASTEUR   (France)

^c AMERICAN HOSPITAL OF PARIS   (France)

Author keywords

Disseminated candidiasis; Invasive aspergillosis; Molecular diagnosis

Indexed keywords

FUNGAL DNA; NUCLEIC ACID;

ASPERGILLOSIS; AUTOMATION; CANDIDIASIS; DIAGNOSTIC ACCURACY; DIAGNOSTIC PROCEDURE; DNA EXTRACTION; HUMAN; KINETICS; MICROBIOLOGY; NONHUMAN; PRIORITY JOURNAL; QUANTITATIVE ANALYSIS; REAL TIME POLYMERASE CHAIN REACTION; SHORT SURVEY;

ASPERGILLOSIS; ASPERGILLUS; CANDIDA; CANDIDIASIS; DNA, FUNGAL; FUNGEMIA; HUMANS; LUNG DISEASES, FUNGAL; POLYMERASE CHAIN REACTION;

EID: 24344463442     PISSN: 09288244     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.femsim.2005.05.012     Document Type: Short Survey

References (53)

1. S. Ascioglu, J.H. Rex, B. de Pauw, J.E. Bennett, J. Bille, F. Crokaert, D.W. Denning, J.P. Donnelly, J.E. Edwards, Z. Erjavec, D. Fiere, O. Lortholary, J. Maertens, J.F. Meis, T.F. Patterson, J. Ritter, D. Selleslag, P.M. Shah, D.A. Stevens, and T.J. Walsh Defining opportunistic invasive fungal infections in immunocompromised patients with cancer and hematopoietic stem cell transplants: an international consensus Clin. Infect. Dis. 34 2002 7 14
2. S. Bretagne Molecular diagnostics in clinical parasitology and mycology: limits of the current polymerase chain reaction (PCR) assays and interest of the real-time PCR assays Clin. Microbiol. Infect. 9 2003 505 511
3. S.C. Chen, C.L. Halliday, and W. Meyer A review of nucleic acid-based diagnostic tests for systemic mycoses with an emphasis on polymerase chain reaction-based assays Med. Mycol. 40 2002 333 357
4. I.M. Mackay Real-time PCR in the microbiology laboratory Clin. Microbiol. Infect. 10 2004 190 212
5. J.A. Vet, A.R. Majithia, S.A. Marras, S. Tyagi, S. Dube, B.J. Poiesz, and F.R. Kramer Multiplex detection of four pathogenic retroviruses using molecular beacons Proc. Natl. Acad. Sci. USA 96 1999 6394 6399
6. B.K. Saha, B. Tian, and R.P. Bucy Quantitation of HIV-1 by real-time PCR with a unique fluorogenic probe J. Virol. Methods 93 2001 33 42
7. M. Egholm, O. Buchardt, L. Christensen, C. Behrens, S.M. Freier, D.A. Driver, R.H. Berg, S.K. Kim, B. Norden, and P.E. Nielsen PNA hybridizes to complementary oligonucleotides obeying the Watson-Crick hydrogen-bonding rules Nature 365 1993 566 568
8. D.A. Braasch, and D.R. Corey Locked nucleic acid (LNA): fine-tuning the recognition of DNA and RNA Chem. Biol. 8 2001 1 7
9. M.C. Longo, M.S. Berninger, and J.L. Hartley Use of uracil DNA glycosylase to control carry-over contamination in polymerase chain reactions Gene 93 1990 125 128
10. S. Bretagne, J.M. Costa, A. Marmorat-Khuong, F. Poron, C. Cordonnier, M. Vidaud, and J. Fleury-Feith Detection of Aspergillus species DNA in bronchoalveolar lavage samples by competitive PCR J. Clin. Microbiol. 33 1995 1164 1168
11. J.M. Costa, P. Ernault, E. Gautier, and S. Bretagne Prenatal diagnosis of congenital toxoplasmosis by duplex real-time PCR using fluorescence resonance energy transfer hybridization probes Prenat. Diagn. 21 2001 85 88
12. M.N. Widjojoatmodjo, A. Borst, R.A. Schukkink, A.T. Box, N.M. Tacken, B. Van Gemen, J. Verhoef, B. Top, and A.C. Fluit Nucleic acid sequence-based amplification (NASBA) detection of medically important Candida species J. Microbiol. Methods 38 1999 81 90
13. J. Loeffler, C. Dorn, H. Hebart, P. Cox, S. Magga, and H. Einsele Development and evaluation of the nuclisens basic kit NASBA for the detection of RNA from Candida species frequently resistant to antifungal drugs Diagn. Microbiol. Infect. Dis. 45 2003 217 220
14. C.C. Ginocchio, M. Kemper, K.A. Stellrecht, and D.J. Witt Multicenter evaluation of the performance characteristics of the NucliSens HIV-1 QT assay used for quantitation of human immunodeficiency virus type 1 RNA J. Clin. Microbiol. 41 2003 164 173
15. J. Loeffler, P. Swatoch, D. Akhawi-Araghi, H. Hebart, and H. Einsele Automated RNA extraction by MagNA Pure followed by rapid quantification of cytokine and chemokine gene expression with use of fluorescence resonance energy transfer Clin. Chem. 49 2003 955 958
16. C. Costa, J.M. Costa, C. Desterke, F. Botterel, C. Cordonnier, and S. Bretagne Real-time PCR coupled with automated DNA extraction and detection of galactomannan antigen in serum by enzyme-linked immunosorbent assay for diagnosis of invasive aspergillosis J. Clin. Microbiol. 40 2002 2224 2227
17. A.H. Groll, P.M. Shah, C. Mentzel, M. Schneider, G. Just-Nuebling, and K. Huebner Trends in the postmortem epidemiology of invasive fungal infections at a university hospital J. Infect. 33 1996 23 32
18. I. Raad, H. Hanna, A. Huaringa, D. Sumoza, R. Hachem, and M. Albitar Diagnosis of invasive pulmonary aspergillosis using polymerase chain reaction-based detection of aspergillus in BAL Chest 121 2002 1171 1176
19. M. Kawazu, Y. Kanda, S. Goyama, M. Takeshita, Y. Nannya, M. Niino, Y. Komeno, T. Nakamoto, M. Kurokawa, S. Tsujino, S. Ogawa, K. Aoki, S. Chiba, T. Motokura, N. Ohishi, and H. Hirai Rapid diagnosis of invasive pulmonary aspergillosis by quantitative polymerase chain reaction using bronchial lavage fluid Am. J. Hematol. 72 2003 27 30
20. H. Einsele, H. Hebart, G. Roller, J. Loffler, I. Rothenhofer, C.A. Muller, R.A. Bowden, J. van Burik, D. Engelhard, L. Kanz, and U. Schumacher Detection and identification of fungal pathogens in blood by using molecular probes J. Clin. Microbiol. 35 1997 1353 1360
21. S. Bretagne, J.-M. Costa, E. Bart-Delabesse, N. Dhédin, C. Rieux, and C. Cordonnier Comparison of serum galactomannan antigen detection and competitive polymerase chain reaction in diagnosing invasive aspergillosis Clin. Inf. Dis. 26 1998 1407 1412
22. L. Jimenez, S. Smalls, and R. Ignar Use of PCR analysis for detecting low levels of bacteria and mold contamination in pharmaceutical samples J. Microbiol. Methods 41 2000 259 265
23. J. Loeffler, H. Hebart, R. Bialek, L. Hagmeyer, D. Schmidt, F.P. Serey, M. Hartmann, J. Eucker, and H. Einsele Contaminations occurring in fungal PCR assays J. Clin. Microbiol. 37 1999 1200 1202
24. D. Rimek, A.P. Garg, W.H. Haas, and R. Kappe Identification of contaminating fungal DNA sequences in Zymolyase J. Clin. Microbiol. 37 1999 830 831
25. Y. Yamakami, A. Hashimoto, I. Tokimatsu, and M. Nasu PCR detection of DNA specific for Aspergillus species in serum of patients with invasive aspergillosis J. Clin. Microbiol. 34 1996 2464 2468
26. S. Challier, S. Boyer, E. Abachin, and P. Berche Development of a serum-based Taqman real-time PCR assay for diagnosis of invasive aspergillosis J. Clin. Microbiol. 42 2004 844 846
27. C. Costa, D. Vidaud, M. Olivi, E. Bart-Delabesse, M. Vidaud, and S. Bretagne Development of two real-time quantitative TaqMan PCR assays to detect circulating Aspergillus fumigatus DNA in serum J. Microbiol. Methods 44 2001 263 269
28. M. Kawazu, Y. Kanda, Y. Nannya, K. Aoki, M. Kurokawa, S. Chiba, T. Motokura, H. Hirai, and S. Ogawa Prospective comparison of the diagnostic potential of real-time PCR, double-sandwich enzyme-linked immunosorbent assay for galactomannan, and a (1 → 3)-beta-d-glucan test in weekly screening for invasive aspergillosis in patients with hematological disorders J. Clin. Microbiol. 42 2004 2733 2741
29. M.J. Becker, S. de Marie, D. Willemse, H.A. Verbrugh, and I.A. Bakker-Woudenberg Quantitative galactomannan detection is superior to PCR in diagnosing and monitoring invasive pulmonary aspergillosis in an experimental rat model J. Clin. Microbiol. 38 2000 1434 1438
30. J.M. Costa, C. Pautas, P. Ernault, F. Foulet, C. Cordonnier, and S. Bretagne Real-time PCR for diagnosis and follow-up of Toxoplasma reactivation after allogeneic stem cell transplantation using fluorescence resonance energy transfer hybridization probes J. Clin. Microbiol. 38 2000 2929 2932
31. P.H. Hendolin, L. Paulin, P. Koukila-Kahkola, V.J. Anttila, H. Malmberg, M. Richardson, and J. Ylikoski Panfungal PCR and multiplex liquid hybridization for detection of fungi in tissue specimens J. Clin. Microbiol. 38 2000 4186 4192
32. A. Imhof, C. Schaer, G. Schoedon, D.J. Schaer, R.B. Walter, A. Schaffner, and M. Schneemann Rapid detection of pathogenic fungi from clinical specimens using LightCycler real-time fluorescence PCR Eur. J. Clin. Microbiol. Infect. Dis. 22 2003 558 560
33. R.T. Hayden, P.A. Isotalo, T. Parrett, D.M. Wolk, X. Qian, G.D. Roberts, and R.V. Lloyd In situ hybridization for the differentiation of Aspergillus, Fusarium, and Pseudallescheria species in tissue section Diagn. Mol. Pathol. 12 2003 21 26
34. A.J. van Deventer, W.H. Goessens, A. van Belkum, H.J. van Vliet, E.W. van Etten, and H.A. Verbrugh Improved detection of Candida albicans by PCR in blood of neutropenic mice with systemic candidiasis J. Clin. Microbiol. 33 1995 625 628
35. M. Flahaut, D. Sanglard, M. Monod, J. Bille, and M. Rossier Rapid detection of Candida albicans in clinical samples by DNA amplification of common regions from, C. albicans-secreted aspartic proteinase genes J. Clin. Microbiol. 36 1998 395 401
36. S. Ahmad, Z. Khan, A.S. Mustafa, and Z.U. Khan Seminested PCR for diagnosis of candidemia: comparison with culture, antigen detection, and biochemical methods for species identification J. Clin. Microbiol. 40 2002 2483 2489
37. M. Bougnoux, C. Dupont, J. Mateo, P. Saulnier, V. Faivre, D. Payen, and M. Nicolas-Chanoine Serum is more suitable than whole blood for diagnosis of systemic candidiasis by nested PCR J. Clin. Microbiol. 37 1999 925 930
38. R. Wahyuningsih, H.J. Freisleben, H.G. Sonntag, and P. Schnitzler Simple and rapid detection of Candida albicans DNA in serum by PCR for diagnosis of invasive candidiasis J. Clin. Microbiol. 38 2000 3016 3021
39. A.M. Tortorano, J. Peman, H. Bernhardt, L. Klingspor, C.C. Kibbler, O. Faure, E. Biraghi, E. Canton, K. Zimmermann, S. Seaton, and R. Grillot Epidemiology of candidaemia in Europe: results of 28-month European Confederation of Medical Mycology (ECMM) hospital-based surveillance study Eur. J. Clin. Microbiol. Infect. Dis. 23 2004 317 322
40. P.L. White, A. Shetty, and R.A. Barnes Detection of seven Candida species using the Light-Cycler system J. Med. Microbiol. 52 2003 229 238
41. Y. Maaroufi, C. Heymans, J.M. De Bruyne, V. Duchateau, H. Rodriguez-Villalobos, M. Aoun, and F. Crokaert Rapid detection of Candida albicans in clinical blood samples by using a TaqMan-based PCR assay J. Clin. Microbiol. 41 2003 3293 3298
42. J. Loeffler, N. Henke, H. Hebart, D. Schmidt, L. Hagmeyer, U. Schumacher, and H. Einsele Quantification of fungal DNA by using fluorescence resonance energy transfer and the light cycler system J. Clin. Microbiol. 38 2000 586 590
43. M. Guiver, K. Levi, and B.A. Oppenheim Rapid identification of candida species by TaqMan PCR J. Clin. Pathol. 54 2001 362 366
44. C.N. Okeke, R. Tsuboi, and H. Ogawa Quantification of Candida albicans actin mRNA by the LightCycler system as a means of assessing viability in a model of cutaneous candidiasis J. Clin. Microbiol. 39 2001 3491 3494
45. P.L. White, D.W. Williams, T. Kuriyama, S.A. Samad, M.A. Lewis, and R.A. Barnes Detection of Candida in concentrated oral rinse cultures by real-time PCR J. Clin. Microbiol. 42 2004 2101 2107
46. B. Spiess, D. Buchheidt, C. Baust, H. Skladny, W. Seifarth, U. Zeilfelder, C. Leib-Mosch, H. Morz, and R. Hehlmann Development of a LightCycler PCR assay for detection and quantification of Aspergillus fumigatus DNA in clinical samples from neutropenic patients J. Clin. Microbiol. 41 2003 1811 1818
47. K. Rantakokko-Jalava, S. Laaksonen, J. Issakainen, J. Vauras, J. Nikoskelainen, M.K. Viljanen, and J. Salonen Semiquantitative detection by real-time PCR of Aspergillus fumigatus in bronchoalveolar lavage fluids and tissue biopsy specimens from patients with invasive aspergillosis J. Clin. Microbiol. 41 2003 4304 4311
48. M. Sanguinetti, B. Posteraro, L. Pagano, G. Pagliari, L. Fianchi, L. Mele, M. La Sorda, A. Franco, and G. Fadda Comparison of real-time PCR, conventional PCR, and galactomannan antigen detection by enzyme-linked immunosorbent assay using bronchoalveolar lavage fluid samples from hematology patients for diagnosis of invasive pulmonary aspergillosis J. Clin. Microbiol. 41 2003 3922 3925
49. T.M. Pryce, I.D. Kay, S. Palladino, and C.H. Heath Real-time automated polymerase chain reaction (PCR) to detect Candida albicans and Aspergillus fumigatus DNA in whole blood from high-risk patients Diagn. Microbiol. Infect. Dis. 47 2003 487 496
50. M. Kami, T. Fukui, S. Ogawa, Y. Kazuyama, U. Machida, Y. Tanaka, Y. Kanda, T. Kashima, Y. Yamazaki, T. Hamaki, S. Mori, H. Akiyama, Y. Mutou, H. Sakamaki, K. Osumi, S. Kimura, and H. Hirai Use of real-time PCR on blood samples for diagnosis of invasive aspergillosis Clin. Infect. Dis. 33 2001 1504 1512
51. J.C. Bowman, G.K. Abruzzo, J.W. Anderson, A.M. Flattery, C.J. Gill, V.B. Pikounis, D.M. Schmatz, P.A. Liberator, and C.M. Douglas Quantitative PCR assay to measure Aspergillus fumigatus burden in a murine model of disseminated aspergillosis: demonstration of efficacy of caspofungin acetate Antimicrob. Agents Chemother. 45 2001 3474 3481
52. A.S. Pham, J.J. Tarrand, G.S. May, M.S. Lee, D.P. Kontoyiannis, and X.Y. Han Diagnosis of invasive mold infection by real-time quantitative PCR Am. J. Clin. Pathol. 119 2003 38 44
53. C.E. O'Sullivan, M. Kasai, A. Francesconi, V. Petraitis, R. Petraitiene, A.M. Kelaher, A.A. Sarafandi, and T.J. Walsh Development and validation of a quantitative real-time PCR assay using fluorescence resonance energy transfer technology for detection of Aspergillus fumigatus in experimental invasive pulmonary aspergillosis J. Clin. Microbiol. 41 2003 5676 5682